Sed0018871 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGAAGAAGTTAGCCGTTGCTGCCTTCATTGTTGTTTCAGCCTCTCTGGACATGGTTTTGGCCTCCAATGAAGCGGCAGCGCCTGCACCCGGCCCGTCAAGCAGCGCCTCCATTATCTTGCCCGGCGTCGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTGCATACTACCTTCAGTAA ATGGAAATGAAGAAGTTAGCCGTTGCTGCCTTCATTGTTGTTTCAGCCTCTCTGGACATGGTTTTGGCCTCCAATGAAGCGGCAGCGCCTGCACCCGGCCCGTCAAGCAGCGCCTCCATTATCTTGCCCGGCGTCGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTGCATACTACCTTCAGTAA ATGGAAATGAAGAAGTTAGCCGTTGCTGCCTTCATTGTTGTTTCAGCCTCTCTGGACATGGTTTTGGCCTCCAATGAAGCGGCAGCGCCTGCACCCGGCCCGTCAAGCAGCGCCTCCATTATCTTGCCCGGCGTCGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTGCATACTACCTTCAGTAA MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ Homology
BLAST of Sed0018871 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]) HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08 Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0
BLAST of Sed0018871 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus]) HSP 1 Score: 65.1 bits (157), Expect = 2.5e-07 Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0
BLAST of Sed0018871 vs. NCBI nr
Match: PON91671.1 (hypothetical protein TorRG33x02_125020 [Trema orientale]) HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05 Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0
BLAST of Sed0018871 vs. NCBI nr
Match: PON58107.1 (hypothetical protein PanWU01x14_168770 [Parasponia andersonii]) HSP 1 Score: 57.0 bits (136), Expect = 6.7e-05 Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0
BLAST of Sed0018871 vs. NCBI nr
Match: KCW90250.1 (hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]) HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04 Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0
BLAST of Sed0018871 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2) HSP 1 Score: 51.6 bits (122), Expect = 3.7e-06 Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0
BLAST of Sed0018871 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.3e-09 Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0
BLAST of Sed0018871 vs. ExPASy TrEMBL
Match: A0A2P5F1L3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05 Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0
BLAST of Sed0018871 vs. ExPASy TrEMBL
Match: A0A2P5CAP7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05 Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0
BLAST of Sed0018871 vs. ExPASy TrEMBL
Match: A0A059DIY4 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02403 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 9.5e-05 Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0
BLAST of Sed0018871 vs. ExPASy TrEMBL
Match: A0A200QP69 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1779g40 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 9.5e-05 Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 0
BLAST of Sed0018871 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 ) HSP 1 Score: 51.6 bits (122), Expect = 2.6e-07 Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0
BLAST of Sed0018871 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 4.2e-05 Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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