Sed0017074 (gene) Chayote v1

Overview


Name	Sed0017074
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	LG08: 1288558 .. 1290944 (-)
RNA-Seq Expression	Sed0017074
Synteny	Sed0017074

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCGTTGAGTCACGAAAATCTCATAAACCAACCGTTAGATCTAAGGAGCAAACAAGAGCCACAAACTTAGCACAAAATCGAAGTTACAAAGCCCTGCAAATTACTCCCCAAAAAGAAAAACCGATAATTCAAGAGAGAAATGGCCACCGTCACAACCCAAGCCTCCGCCGCCGTATTCCGGCCATGCGCCGCCCGGTCCAGGTTCCTCTCCGGTTCGTCCGGTAAACTCCACCGTGAGCTGTCGGTTAAACCGGTGGCTGCTGCTTCGTCGTCGTCTTCATCTCTCAAAATTGAAGCCAAGAAGGGAGAATGGCTGCCCGGTCTGCCGTCGCCGGCGTACTTAAACGGCAGGTAATGTCATTAACATTAAATTAATCCCTCGTTATTAAAAACTTTAACTTGGGTTTTATTAGATAATATAATGTTGCACCTCAAAATCAATTCTTACCCTCATTAACATTAGCTCGATAATCAAAGATTAATTAAACTTGAGTTTTATTTGATAATATAAAGTTATTTTTCAAAGTAACATTGGTTAATATTAATTAATCACTCGTTAATCAAATAATAAACTTGGATTTTATTAGATAATATAAGAGTAACCTTAGTGGAACCACCGCTTTATCTAATATGTTAGTCTATGTAAAATTCCCATCCGACCAAGCTAGTTAGCACAAACGAGTATTTGATCCACCAATTCGGATCATATTCAAAATGGTCTTCAACTCCATTTTGAGGGATATATTGGACATCTTGTCATTGAAAAGATGATAAGTTTTTAATATCTACATGCTACTTTTCTCGCTACTAATTGGTTTTGAGATCATGCTATCTAATAGGTTTTCTCTAATTCATTGATTAAACGAAATGCAGCCTTCCCGGTGACAACGGATTCGACCCGTTGGGTCTAGCGGAGGACCCGGAAAACTTGCGGTGGTTCGTGCAGGCAGAGCTCGTCAACGGCCGTTGGGCAATGTTGGGAGTCGCGGGAATGCTGCTGCCGGAGGTGTTTACGAAGATCGGAATCATCAACGCTCCTCAATGGTACGATGCGGGAAAAGCAGAGTACTTCGCATCGTCTTCGACTCTGTTCGTGATCGAGTTCATTCTGTTTCATTACGTCGAAATTCGAAGATGGCAGGATATTAAGAACCCAGGCAGTGTTAACCAAGATCCCATTTTCAAGCAATACAGTTTGCCACCCAATGAATGTGGCTACCCTGGTGGCATTTTCAACCCTCTCAATTTTGCCCCAACTCTTGAGGCCAAAGAGAAGGAAATTGCTAATGGTAAGATCTTAATAAGAATTCCCTAATTTTGGTTTTTAAATTAGGAAGAATGTTATGACTAACGGTAATAACCATCAAGAATTAAAAGATAAATGATGAAGAACCCAAAAAACTATCTTATTTAGAAGATAAGAACACAAATATTTGATTCAAAACACTAAAGTTGATTATGAGAGAGTTATATAATGCTCAGCCAATATATTAGGCAACAACCCAATCAACCACTACTCAACCCAAATTGCTGGGTTATAATTTTTCTTCCACTGAGTTGGGATCCCAACTCAGTGGAAGAAATATATCCGGATATGATTTTATTATTTTTGTTAGTCTAGGTTGGTTCTATCAATTCAACCAATTTTGGTTTGTTCATCTTAGCACAATTCAATCTAAGAATAATATTATATATATAGATGCAAGATTAATCAATAAGACAGGTTAAATAACATATATATAACTTAGATTAAGTTTAAGTATAAGATCACGCAACATTTCTTTTTTTACATATTTATGAGTTATGAATTAAATCGTAGAGAGGACACAACTCGATGACCTAATGGAATTCAACCTGATAATAAAAGGTTGAGTTGGGTTAATCTAATACATAGAGTTGGATGAGTTTTAGGTTGATCAAAAAAAGTTCACCTAGCCTGACTTAACCCGTACCATGTACACCCTATAACATGTAATCCAAATACAAAGAAGCCCAATACTAAAGTAATCATAGACATTTCAACTAAAAAAAACTTGAACTGATGGTGGTGTTGATGTGAAATGGTACAGGGAGACTTGCAATGTTGGCATTTTTGGGGTTCATTGTGCAGCACAATGTGACAGGGAAGGGGCCATTTGACAACTTCTTGCAGCATATTTCTGACCCATGGCACAACACCATTGTGCAGACTTTTGGTGGCAACTAAATTTGAGGTTTAAAGATTGTTGATGTTGTTGTAATTTGTATTCAAAGTGAGTGTATTTGATGGAATGTGATGCAACATATTGGATATCAATGTACAGAGATGGAGGGGATTCCTAGCTTGTAGCTTCCATGTTGTTCTTTAAATGACATATGATGATAAATTGGGTCTTGCTTCCTTCAA

mRNA sequence

GGCCGTTGAGTCACGAAAATCTCATAAACCAACCGTTAGATCTAAGGAGCAAACAAGAGCCACAAACTTAGCACAAAATCGAAGTTACAAAGCCCTGCAAATTACTCCCCAAAAAGAAAAACCGATAATTCAAGAGAGAAATGGCCACCGTCACAACCCAAGCCTCCGCCGCCGTATTCCGGCCATGCGCCGCCCGGTCCAGGTTCCTCTCCGGTTCGTCCGGTAAACTCCACCGTGAGCTGTCGGTTAAACCGGTGGCTGCTGCTTCGTCGTCGTCTTCATCTCTCAAAATTGAAGCCAAGAAGGGAGAATGGCTGCCCGGTCTGCCGTCGCCGGCGTACTTAAACGGCAGCCTTCCCGGTGACAACGGATTCGACCCGTTGGGTCTAGCGGAGGACCCGGAAAACTTGCGGTGGTTCGTGCAGGCAGAGCTCGTCAACGGCCGTTGGGCAATGTTGGGAGTCGCGGGAATGCTGCTGCCGGAGGTGTTTACGAAGATCGGAATCATCAACGCTCCTCAATGGTACGATGCGGGAAAAGCAGAGTACTTCGCATCGTCTTCGACTCTGTTCGTGATCGAGTTCATTCTGTTTCATTACGTCGAAATTCGAAGATGGCAGGATATTAAGAACCCAGGCAGTGTTAACCAAGATCCCATTTTCAAGCAATACAGTTTGCCACCCAATGAATGTGGCTACCCTGGTGGCATTTTCAACCCTCTCAATTTTGCCCCAACTCTTGAGGCCAAAGAGAAGGAAATTGCTAATGGGAGACTTGCAATGTTGGCATTTTTGGGGTTCATTGTGCAGCACAATGTGACAGGGAAGGGGCCATTTGACAACTTCTTGCAGCATATTTCTGACCCATGGCACAACACCATTGTGCAGACTTTTGGTGGCAACTAAATTTGAGGTTTAAAGATTGTTGATGTTGTTGTAATTTGTATTCAAAGTGAGTGTATTTGATGGAATGTGATGCAACATATTGGATATCAATGTACAGAGATGGAGGGGATTCCTAGCTTGTAGCTTCCATGTTGTTCTTTAAATGACATATGATGATAAATTGGGTCTTGCTTCCTTCAA

Coding sequence (CDS)

ATGGCCACCGTCACAACCCAAGCCTCCGCCGCCGTATTCCGGCCATGCGCCGCCCGGTCCAGGTTCCTCTCCGGTTCGTCCGGTAAACTCCACCGTGAGCTGTCGGTTAAACCGGTGGCTGCTGCTTCGTCGTCGTCTTCATCTCTCAAAATTGAAGCCAAGAAGGGAGAATGGCTGCCCGGTCTGCCGTCGCCGGCGTACTTAAACGGCAGCCTTCCCGGTGACAACGGATTCGACCCGTTGGGTCTAGCGGAGGACCCGGAAAACTTGCGGTGGTTCGTGCAGGCAGAGCTCGTCAACGGCCGTTGGGCAATGTTGGGAGTCGCGGGAATGCTGCTGCCGGAGGTGTTTACGAAGATCGGAATCATCAACGCTCCTCAATGGTACGATGCGGGAAAAGCAGAGTACTTCGCATCGTCTTCGACTCTGTTCGTGATCGAGTTCATTCTGTTTCATTACGTCGAAATTCGAAGATGGCAGGATATTAAGAACCCAGGCAGTGTTAACCAAGATCCCATTTTCAAGCAATACAGTTTGCCACCCAATGAATGTGGCTACCCTGGTGGCATTTTCAACCCTCTCAATTTTGCCCCAACTCTTGAGGCCAAAGAGAAGGAAATTGCTAATGGGAGACTTGCAATGTTGGCATTTTTGGGGTTCATTGTGCAGCACAATGTGACAGGGAAGGGGCCATTTGACAACTTCTTGCAGCATATTTCTGACCCATGGCACAACACCATTGTGCAGACTTTTGGTGGCAACTAA

Protein sequence

MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTFGGN

Homology

[Close]

BLAST of Sed0017074 vs. NCBI nr
Match: XP_038880569.1 (chlorophyll a-b binding protein P4, chloroplastic [Benincasa hispida])

HSP 1 Score: 511.1 bits (1315), Expect = 5.3e-141
Identity = 247/254 (97.24%), Postives = 249/254 (98.03%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPV+A  SSSSS K+EAKKGEWLP
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVSA--SSSSSFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLP
Sbjct: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
           PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDN LQHIS
Sbjct: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQTFGGN
Sbjct: 241 DPWHNTIVQTFGGN 252

[Close]

BLAST of Sed0017074 vs. NCBI nr
Match: XP_008453211.1 (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo] >KAA0057949.1 chlorophyll a-b binding protein P4 [Cucumis melo var. makuwa])

HSP 1 Score: 507.7 bits (1306), Expect = 5.9e-140
Identity = 245/254 (96.46%), Postives = 248/254 (97.64%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAAVFRPCAARSRFLSGSSGKLHR LSVKPV+A  SSSSS K+EAKKGEWLP
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRVLSVKPVSA--SSSSSFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLP
Sbjct: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
           PNECGYPGGIFNPLNFAPTLEAKEKE+ANGRLAMLAFLGFIVQHNVTGKGPFDN LQHIS
Sbjct: 181 PNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQTFGGN
Sbjct: 241 DPWHNTIVQTFGGN 252

[Close]

BLAST of Sed0017074 vs. NCBI nr
Match: XP_022134700.1 (chlorophyll a-b binding protein P4, chloroplastic [Momordica charantia])

HSP 1 Score: 503.4 bits (1295), Expect = 1.1e-138
Identity = 244/254 (96.06%), Postives = 247/254 (97.24%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAAVFRPCA+RSRFLSGSS KLHRELSVKPVAA   SSSSLK+EAKKGEWLP
Sbjct: 1   MATVTTQASAAVFRPCASRSRFLSGSSSKLHRELSVKPVAAL--SSSSLKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GLPSP YLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
           PNE GYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPF+N LQHIS
Sbjct: 181 PNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQTFGGN
Sbjct: 241 DPWHNTIVQTFGGN 252

[Close]

BLAST of Sed0017074 vs. NCBI nr
Match: XP_004138171.1 (chlorophyll a-b binding protein P4, chloroplastic [Cucumis sativus] >KGN63677.1 hypothetical protein Csa_013519 [Cucumis sativus])

HSP 1 Score: 502.3 bits (1292), Expect = 2.5e-138
Identity = 243/254 (95.67%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAAVFRPCAARSRFLSGSSGKL R LSVKPV+A  SSSSS K+EAKKGEWLP
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLQRVLSVKPVSA--SSSSSFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GLPSP YLNGSLPGDNGFDPLGLAEDPENLRW+VQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLPSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLP
Sbjct: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
           PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDN LQHIS
Sbjct: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQTFGGN
Sbjct: 241 DPWHNTIVQTFGGN 252

[Close]

BLAST of Sed0017074 vs. NCBI nr
Match: XP_023516219.1 (chlorophyll a-b binding protein P4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 497.3 bits (1279), Expect = 8.0e-137
Identity = 241/254 (94.88%), Postives = 245/254 (96.46%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAAVFRPCAARSRFL+GSSGKLHR LSVKPVAA  SSSSS K+EAKKGEWLP
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVAA--SSSSSFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GLPSPAYLNGSLPGDNGFDPL LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLPSPAYLNGSLPGDNGFDPLSLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
           PNE GYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGFIVQHNVTGKGPF+N LQHIS
Sbjct: 181 PNEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQTF GN
Sbjct: 241 DPWHNTIVQTFSGN 252

[Close]

BLAST of Sed0017074 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 2.7e-127
Identity = 219/254 (86.22%), Postives = 229/254 (90.16%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAA+F PC  +SRFL GSSGKL+R ++ +PV    S S+S K+EAKKGEWLP
Sbjct: 1   MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGC--SPSASFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GL SP YL GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFT I
Sbjct: 61  GLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIIN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 GIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
             E GYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFI+QHNVTGKGPFDN LQHIS
Sbjct: 181 AGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQT GGN
Sbjct: 241 DPWHNTIVQTLGGN 252

[Close]

BLAST of Sed0017074 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 2.1e-124
Identity = 210/251 (83.67%), Postives = 230/251 (91.63%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTT ASA++FRPC ++ RFL+GSSG+L+R+LS   +  +S+ +SS K+EAKKGEWLP
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSI-GSSAKTSSFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GL SP YL GSL GDNGFDPLGLAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 GIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
             E GYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGF+VQHNVTGKGPF+N LQH+S
Sbjct: 181 KGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLS 240

Query: 241 DPWHNTIVQTF 252
           DPWHNTIVQTF
Sbjct: 241 DPWHNTIVQTF 250

[Close]

BLAST of Sed0017074 vs. ExPASy Swiss-Prot
Match: Q36718 (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare OX=4513 GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 5.8e-90
Identity = 160/222 (72.07%), Postives = 180/222 (81.08%), Query Frame = 0


Query: 36  VKPVAAASSSSSSLKIEA---KKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRW 95
           V P  AAS S  S + +     KG WLPGL SPAYL+GSL GDNGFDPL LAEDPE+LRW
Sbjct: 11  VPPSPAASGSPRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRW 70

Query: 96  FVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYD-AGKAEYFASSSTLFVIEFILF 155
           FVQA++VNGRWAMLGVAGML+PEV TK G++NAP+W    GK  YFASSST   +  +  
Sbjct: 71  FVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSS 130

Query: 156 HYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKEIANGR 215
            YVEIRRWQDIKNPGSVNQDPIFK YSLPP+ECGYPG +FNPLNFAP LE KEKE+ANGR
Sbjct: 131 TYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAP-LENKEKELANGR 190

Query: 216 LAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTFGG 254
           LAMLAFLGF+VQHNV GKGPF+N  QH++DPWHNTI+QT  G
Sbjct: 191 LAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230

[Close]

BLAST of Sed0017074 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.0e-63
Identity = 122/252 (48.41%), Postives = 158/252 (62.70%), Query Frame = 0


Query: 6   TQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLPGLPSP 65
           + A AA+  P      FL G   +L ++L+V  V+   +S  ++  +  +  W PG   P
Sbjct: 8   SSAIAAISSP-----SFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPP 67

Query: 66  AYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINA 125
            +L+GSLPGD GFDPLGL+ DP++L+W VQAE+V+ RWAMLG AG+ +PE  TKIGI+N 
Sbjct: 68  EWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNT 127

Query: 126 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNECG 185
           P WY AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L   + G
Sbjct: 128 PSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVG 187

Query: 186 YPGGI-FNPLNF-----APTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHI 245
           YPGG+ F+PL +     A   E + KEI NGRLAMLA +G   QH  TG GP DN   H+
Sbjct: 188 YPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHL 247

Query: 246 SDPWHNTIVQTF 252
           +DP H TI   F
Sbjct: 248 ADPGHATIFAAF 254

[Close]

BLAST of Sed0017074 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.0e-62
Identity = 119/241 (49.38%), Postives = 151/241 (62.66%), Query Frame = 0


Query: 17  AARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLPGLPSPAYLNGSLPGDN 76
           A ++ FL G   +L     + PV + S + S++  +  +  W PG   P +L+GSLPGD 
Sbjct: 29  ATKASFLGGK--RLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDF 88

Query: 77  GFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY 136
           GFDPLGL  DPE+L+W  QAELV+ RWAMLG AG+ +PE  TKIG++N P WY AG+ EY
Sbjct: 89  GFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY 148

Query: 137 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNECGYPGGI-FNPLN 196
           F  ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   + GYPGG+ F+PL 
Sbjct: 149 FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 208

Query: 197 F-----APTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQT 252
           +     A   E + KEI NGRLAMLA +G   QH  TG GP DN   H++DP H TI   
Sbjct: 209 WGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAA 267

[Close]

BLAST of Sed0017074 vs. ExPASy TrEMBL
Match: A0A5A7UWR2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002520 PE=3 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 2.9e-140
Identity = 245/254 (96.46%), Postives = 248/254 (97.64%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAAVFRPCAARSRFLSGSSGKLHR LSVKPV+A  SSSSS K+EAKKGEWLP
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRVLSVKPVSA--SSSSSFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLP
Sbjct: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
           PNECGYPGGIFNPLNFAPTLEAKEKE+ANGRLAMLAFLGFIVQHNVTGKGPFDN LQHIS
Sbjct: 181 PNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQTFGGN
Sbjct: 241 DPWHNTIVQTFGGN 252

[Close]

BLAST of Sed0017074 vs. ExPASy TrEMBL
Match: A0A1S3BV45 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493999 PE=3 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 2.9e-140
Identity = 245/254 (96.46%), Postives = 248/254 (97.64%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAAVFRPCAARSRFLSGSSGKLHR LSVKPV+A  SSSSS K+EAKKGEWLP
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRVLSVKPVSA--SSSSSFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLP
Sbjct: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
           PNECGYPGGIFNPLNFAPTLEAKEKE+ANGRLAMLAFLGFIVQHNVTGKGPFDN LQHIS
Sbjct: 181 PNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQTFGGN
Sbjct: 241 DPWHNTIVQTFGGN 252

[Close]

BLAST of Sed0017074 vs. ExPASy TrEMBL
Match: A0A6J1BZ19 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006907 PE=3 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 5.4e-139
Identity = 244/254 (96.06%), Postives = 247/254 (97.24%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAAVFRPCA+RSRFLSGSS KLHRELSVKPVAA   SSSSLK+EAKKGEWLP
Sbjct: 1   MATVTTQASAAVFRPCASRSRFLSGSSSKLHRELSVKPVAAL--SSSSLKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GLPSP YLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
           PNE GYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPF+N LQHIS
Sbjct: 181 PNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQTFGGN
Sbjct: 241 DPWHNTIVQTFGGN 252

[Close]

BLAST of Sed0017074 vs. ExPASy TrEMBL
Match: A0A0A0LSB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G009810 PE=3 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.2e-138
Identity = 243/254 (95.67%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAAVFRPCAARSRFLSGSSGKL R LSVKPV+A  SSSSS K+EAKKGEWLP
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLQRVLSVKPVSA--SSSSSFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GLPSP YLNGSLPGDNGFDPLGLAEDPENLRW+VQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLPSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLP
Sbjct: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
           PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDN LQHIS
Sbjct: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQTFGGN
Sbjct: 241 DPWHNTIVQTFGGN 252

[Close]

BLAST of Sed0017074 vs. ExPASy TrEMBL
Match: A0A6J1JG60 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111484821 PE=3 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 8.6e-137
Identity = 240/254 (94.49%), Postives = 245/254 (96.46%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTTQASAAVFRPCAARSRFL+GSSGKLHR LSVKPVAA  SSSSS K+EAKKGEWLP
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLTGSSGKLHRMLSVKPVAA--SSSSSFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GLPSPAYLNGSLPGDNGFDPL LAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLPSPAYLNGSLPGDNGFDPLSLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
           PNE GYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGFIVQHNVTGKGPF+N LQHIS
Sbjct: 181 PNEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHIS 240

Query: 241 DPWHNTIVQTFGGN 255
           DPWHNTIVQTF GN
Sbjct: 241 DPWHNTIVQTFSGN 252

[Close]

BLAST of Sed0017074 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 446.4 bits (1147), Expect = 1.5e-125
Identity = 210/251 (83.67%), Postives = 230/251 (91.63%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLP 60
           MATVTT ASA++FRPC ++ RFL+GSSG+L+R+LS   +  +S+ +SS K+EAKKGEWLP
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSI-GSSAKTSSFKVEAKKGEWLP 60

Query: 61  GLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120
           GL SP YL GSL GDNGFDPLGLAEDPENL+WFVQAELVNGRWAMLGVAGMLLPEVFTKI
Sbjct: 61  GLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKI 120

Query: 121 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GIIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 GIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180

Query: 181 PNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHIS 240
             E GYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGF+VQHNVTGKGPF+N LQH+S
Sbjct: 181 KGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLS 240

Query: 241 DPWHNTIVQTF 252
           DPWHNTIVQTF
Sbjct: 241 DPWHNTIVQTF 250

[Close]

BLAST of Sed0017074 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 242.3 bits (617), Expect = 4.3e-64
Identity = 122/252 (48.41%), Postives = 158/252 (62.70%), Query Frame = 0


Query: 6   TQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAAASSSSSSLKIEAKKGEWLPGLPSP 65
           + A AA+  P      FL G   +L ++L+V  V+   +S  ++  +  +  W PG   P
Sbjct: 8   SSAIAAISSP-----SFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPP 67

Query: 66  AYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINA 125
            +L+GSLPGD GFDPLGL+ DP++L+W VQAE+V+ RWAMLG AG+ +PE  TKIGI+N 
Sbjct: 68  EWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNT 127

Query: 126 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNECG 185
           P WY AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L   + G
Sbjct: 128 PSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVG 187

Query: 186 YPGGI-FNPLNF-----APTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHI 245
           YPGG+ F+PL +     A   E + KEI NGRLAMLA +G   QH  TG GP DN   H+
Sbjct: 188 YPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHL 247

Query: 246 SDPWHNTIVQTF 252
           +DP H TI   F
Sbjct: 248 ADPGHATIFAAF 254

[Close]

BLAST of Sed0017074 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-56
Identity = 105/209 (50.24%), Postives = 143/209 (68.42%), Query Frame = 0


Query: 51  IEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 110
           +  ++  WLPGL  P YL+G+L GD GFDPLGL EDPE+L+W+VQAELV+ R+AMLGVAG
Sbjct: 42  VAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAG 101

Query: 111 MLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 170
           +L  ++    GI N P WY+AG  ++ FAS+ TL V++F+L  + E +R+ D  +PGS  
Sbjct: 102 ILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQA 161

Query: 171 QDPIF---KQYSLPPNECGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFI 230
           ++  F    + +L   E GYPGG + NPL  A  ++     K KEI NGRLAM+A LGF 
Sbjct: 162 KEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFF 221

Query: 231 VQHNVTGKGPFDNFLQHISDPWHNTIVQT 251
           VQ +VT  GP DN ++H+S+PWH TI+QT
Sbjct: 222 VQASVTHTGPIDNLVEHLSNPWHKTIIQT 250

[Close]

BLAST of Sed0017074 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-56
Identity = 105/209 (50.24%), Postives = 143/209 (68.42%), Query Frame = 0


Query: 51  IEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 110
           +  ++  WLPGL  P YL+G+L GD GFDPLGL EDPE+L+W+VQAELV+ R+AMLGVAG
Sbjct: 42  VAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAG 101

Query: 111 MLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 170
           +L  ++    GI N P WY+AG  ++ FAS+ TL V++F+L  + E +R+ D  +PGS  
Sbjct: 102 ILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQA 161

Query: 171 QDPIF---KQYSLPPNECGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFI 230
           ++  F    + +L   E GYPGG + NPL  A  ++     K KEI NGRLAM+A LGF 
Sbjct: 162 KEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFF 221

Query: 231 VQHNVTGKGPFDNFLQHISDPWHNTIVQT 251
           VQ +VT  GP DN ++H+S+PWH TI+QT
Sbjct: 222 VQASVTHTGPIDNLVEHLSNPWHKTIIQT 250

[Close]

BLAST of Sed0017074 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 212.2 bits (539), Expect = 4.8e-55
Identity = 109/259 (42.08%), Postives = 147/259 (56.76%), Query Frame = 0


Query: 1   MATVTTQASAAVFRPCAARSRFLSGSS--GKLHRELSVKPVAAASSSSSSLKIEAKKGEW 60
           + +  T +++ V  P   R    S SS  G+L RE  V   A    SS    +   +  W
Sbjct: 9   LTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLW 68

Query: 61  LPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFT 120
            PG   P +L+GSLPGD GFDPLGL  DP+ L+WF QAEL++ RWAML V G+++PE   
Sbjct: 69  FPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLE 128

Query: 121 KIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 180
           ++G I    WYDAG  EYFA S+TLFV + +L  + E RRW D+  PGSV+ +P +    
Sbjct: 129 RLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKV 188

Query: 181 LPPNECGYPGGIFNPLNF------APTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPF 240
            P  + GYPGG++            P +  + KEI NGRLAMLAFLGF  Q   T + P 
Sbjct: 189 NPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPI 248

Query: 241 DNFLQHISDPWHNTIVQTF 252
           +N + H++DP H  +   F
Sbjct: 249 ENLMAHLADPGHCNVFSAF 267

The following BLAST results are available for this feature:

BLAST of Sed0017074 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880569.1	5.3e-141	97.24	chlorophyll a-b binding protein P4, chloroplastic [Benincasa hispida]	[more]
XP_008453211.1	5.9e-140	96.46	PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo] >KAA...	[more]
XP_022134700.1	1.1e-138	96.06	chlorophyll a-b binding protein P4, chloroplastic [Momordica charantia]	[more]
XP_004138171.1	2.5e-138	95.67	chlorophyll a-b binding protein P4, chloroplastic [Cucumis sativus] >KGN63677.1 ...	[more]
XP_023516219.1	8.0e-137	94.88	chlorophyll a-b binding protein P4, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0017074 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SQL2	2.7e-127	86.22	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
P27521	2.1e-124	83.67	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q36718	5.8e-90	72.07	Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulga...	[more]
Q9SYW8	6.0e-63	48.41	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P13869	3.0e-62	49.38	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of Sed0017074 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UWR2	2.9e-140	96.46	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BV45	2.9e-140	96.46	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1BZ19	5.4e-139	96.06	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0LSB4	1.2e-138	95.67	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1JG60	8.6e-137	94.49	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Sed0017074 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47470.1	1.5e-125	83.67	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	4.3e-64	48.41	photosystem I light harvesting complex gene 2	[more]
AT1G45474.1	2.5e-56	50.24	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	2.5e-56	50.24	photosystem I light harvesting complex gene 5	[more]
AT1G19150.1	4.8e-55	42.08	photosystem I light harvesting complex gene 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 65..224 e-value: 1.2E-48 score: 165.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 65..244 e-value: 6.7E-67 score: 227.0
None	No IPR available	PANTHER	PTHR21649:SF109	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..254
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 55..251
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017074.1	Sed0017074.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009409	response to cold
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009645	response to low light intensity stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019904	protein domain specific binding