Sed0016831 (gene) Chayote v1

Overview
NameSed0016831
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
LocationLG09: 34608101 .. 34608385 (+)
RNA-Seq ExpressionSed0016831
SyntenySed0016831
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCTTATTGTTGTCAGATTCCAGGGATTGTAGATTCTGAGATAGCGGAGGCAATAGCAGTATGTAATGGCATGGACCTTGCGATGGATCTCGGATTTCAAAGAATTAAAATGGAGACGGATGCTTTGCGTGTGGTAAATCTTCTCAACAACCAAATGCATTGTCGATCGGAAGTTGGAAGGCTTGTCGAAGAGATAAAGAGCTTAGCGAGAAACTTCTTGTTCGTGAGCTTTGGGTGGTGTGGACGAGATGCGAATTCTATTGCTCACAAGCTAGCTTAG

mRNA sequence

ATGACTTCTTATTGTTGTCAGATTCCAGGGATTGTAGATTCTGAGATAGCGGAGGCAATAGCAGTATGTAATGGCATGGACCTTGCGATGGATCTCGGATTTCAAAGAATTAAAATGGAGACGGATGCTTTGCGTGTGGTAAATCTTCTCAACAACCAAATGCATTGTCGATCGGAAGTTGGAAGGCTTGTCGAAGAGATAAAGAGCTTAGCGAGAAACTTCTTGTTCGTGAGCTTTGGGTGGTGTGGACGAGATGCGAATTCTATTGCTCACAAGCTAGCTTAG

Coding sequence (CDS)

ATGACTTCTTATTGTTGTCAGATTCCAGGGATTGTAGATTCTGAGATAGCGGAGGCAATAGCAGTATGTAATGGCATGGACCTTGCGATGGATCTCGGATTTCAAAGAATTAAAATGGAGACGGATGCTTTGCGTGTGGTAAATCTTCTCAACAACCAAATGCATTGTCGATCGGAAGTTGGAAGGCTTGTCGAAGAGATAAAGAGCTTAGCGAGAAACTTCTTGTTCGTGAGCTTTGGGTGGTGTGGACGAGATGCGAATTCTATTGCTCACAAGCTAGCTTAG

Protein sequence

MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA
Homology
BLAST of Sed0016831 vs. NCBI nr
Match: KAF7825347.1 (uncharacterized protein G2W53_016511 [Senna tora])

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 7   QIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEE 66
           +IP     E+ EA AV  GM++A+ LG Q+  +E + L ++N L + +   S +G ++  
Sbjct: 181 KIPSSKAIELLEAEAVKRGMEMAIRLGIQKAMVEGECLGIMNFLQSNVSILSPLGTVLNN 240

Query: 67  IKSLARNFLFVSFGWCGRDANSIAHKLA 95
           IKSL + F FVSF W  RDAN +A+KLA
Sbjct: 241 IKSLVQAFSFVSFKWIPRDANQVANKLA 268

BLAST of Sed0016831 vs. NCBI nr
Match: MBA0731259.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 0

Query: 6   CQIP--GIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRL 65
           C  P  G+ D+ IAEA      M  A +LGF+ I +E D+L V+  LNN    RS +G +
Sbjct: 136 CTYPHFGVADAFIAEAQVCEQTMTFAQELGFRSIHVEGDSLTVIKKLNNTDSDRSVLGLI 195

Query: 66  VEEIKSLARNFLFVSFGWCGRDANSIAHKLA 95
           +++IK   R F  V+FG+ GR AN+ AH LA
Sbjct: 196 IQDIKGKVRGFDSVTFGFVGRSANTTAHVLA 226

BLAST of Sed0016831 vs. NCBI nr
Match: TXG69190.1 (hypothetical protein EZV62_004125 [Acer yangbiense])

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0

Query: 1   MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEV 60
           M S C   PG++  +  EA+AV  G  LA++ G     +E+D+L VVNL+N+    R+E+
Sbjct: 739 MASLCQSFPGLLQPQTVEAVAVLRGFRLALEAGLCPASIESDSLSVVNLINSMDILRAEI 798

Query: 61  GRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA 95
           G ++ +I ++  N  F S  +  R  N +AH LA
Sbjct: 799 GVVLHDILAMGSNSFFSSVSFVPRLTNCVAHSLA 832

BLAST of Sed0016831 vs. NCBI nr
Match: KAE8813045.1 (hypothetical protein D1007_09808 [Hordeum vulgare])

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-08
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0

Query: 1   MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEV 60
           M + C  IP   D+  AEA  +C+G+ LA +LG +++ +E+D + VV+ + +  +     
Sbjct: 121 MAALCSDIPFADDAVSAEARGLCDGLILANELGLEKLVVESDCIEVVDTMLDSGNSLGPA 180

Query: 61  GRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA 95
             + EE   LA NF F+ F +C R+AN  AH LA
Sbjct: 181 AAIYEECSFLAHNFSFIQFQFCPREANMAAHILA 214

BLAST of Sed0016831 vs. NCBI nr
Match: KAF7801517.1 (reverse transcriptase [Senna tora])

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-08
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 7   QIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEE 66
           ++P  VD +I EA A+  GM+ A DL  Q I +E D+  V+  L++ +  RS +G +++ 
Sbjct: 159 RVPSAVDVDILEATAIFTGMEFARDLSIQDIVVEGDSAIVLGYLSSAVSLRSPLGLILDN 218

Query: 67  IKSLARNFLFVSFGWCGRDANSIAHKLA 95
           I+SL  +F  V F W  R+AN +A  LA
Sbjct: 219 IRSLCASFRRVEFKWVRREANGVADLLA 246

BLAST of Sed0016831 vs. ExPASy TrEMBL
Match: A0A7J9B6E6 (RNase H domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_023064 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.6e-09
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 0

Query: 6   CQIP--GIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRL 65
           C  P  G+ D+ IAEA      M  A +LGF+ I +E D+L V+  LNN    RS +G +
Sbjct: 136 CTYPHFGVADAFIAEAQVCEQTMTFAQELGFRSIHVEGDSLTVIKKLNNTDSDRSVLGLI 195

Query: 66  VEEIKSLARNFLFVSFGWCGRDANSIAHKLA 95
           +++IK   R F  V+FG+ GR AN+ AH LA
Sbjct: 196 IQDIKGKVRGFDSVTFGFVGRSANTTAHVLA 226

BLAST of Sed0016831 vs. ExPASy TrEMBL
Match: A0A5C7IIT4 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.6e-09
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0

Query: 1   MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEV 60
           M S C   PG++  +  EA+AV  G  LA++ G     +E+D+L VVNL+N+    R+E+
Sbjct: 739 MASLCQSFPGLLQPQTVEAVAVLRGFRLALEAGLCPASIESDSLSVVNLINSMDILRAEI 798

Query: 61  GRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA 95
           G ++ +I ++  N  F S  +  R  N +AH LA
Sbjct: 799 GVVLHDILAMGSNSFFSSVSFVPRLTNCVAHSLA 832

BLAST of Sed0016831 vs. ExPASy TrEMBL
Match: A0A2N9H585 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34683 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 0

Query: 1   MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEV 60
           M S C +IP     E+ EA AV   ++L +DLG + + +E D+L+++  L     C +  
Sbjct: 17  MASLCQRIPYPHSVEVVEASAVRTAVNLVLDLGLREVDIEGDSLKIITALQQNSPCYTLY 76

Query: 61  GRLVEEIKSLARNFLFVSFGWCGRDANSIAHKLA 95
           G L+ E K+LA+N +   F    RD N++AH LA
Sbjct: 77  GHLIMETKTLAQNLISFQFMHVKRDGNTVAHSLA 110

BLAST of Sed0016831 vs. ExPASy TrEMBL
Match: A0A5J9SXC3 (RNase H domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_50809 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.6e-08
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 10 GIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEVGRLVEEIKS 69
          GI D E+AEA+A   GM LA DL  Q+ ++ TD L VV   N Q       G +V EIK+
Sbjct: 3  GITDPEMAEAMAWREGMALASDLVLQKFRLATDCLNVVR--NLQGTAMGAYGYIVREIKA 62

Query: 70 LARNFLFVSFGWCGRDANSIAHKLA 95
           A++F+ VSF   GR+AN  AH+LA
Sbjct: 63 RAKDFIDVSFIHKGREANGDAHRLA 85

BLAST of Sed0016831 vs. ExPASy TrEMBL
Match: V4UMR3 (RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10027161mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.1e-08
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 0

Query: 1   MTSYCCQIPGIVDSEIAEAIAVCNGMDLAMDLGFQRIKMETDALRVVNLLNNQMHCRSEV 60
           M +  C +    D E  EA+AV NG+ L MD+G     +E+D+  VVNL+NN++H R EV
Sbjct: 40  MAASICTVIFSRDIEFVEAVAVHNGLQLVMDIGLAPAIIESDSFNVVNLINNKIHSRCEV 99

Query: 61  GRL---VEEIKSLARNFLFVSFGWCGRDANSIAHKLA 95
           G L   V+E+ S + +   V F    R  N +AH L+
Sbjct: 100 GWLISDVQEVLSSSESSFQVKF--APRSCNEVAHHLS 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7825347.11.4e-0942.05uncharacterized protein G2W53_016511 [Senna tora][more]
MBA0731259.11.2e-0842.86hypothetical protein [Gossypium laxum][more]
TXG69190.12.0e-0836.17hypothetical protein EZV62_004125 [Acer yangbiense][more]
KAE8813045.12.6e-0836.17hypothetical protein D1007_09808 [Hordeum vulgare][more]
KAF7801517.14.4e-0838.64reverse transcriptase [Senna tora][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J9B6E65.6e-0942.86RNase H domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_023064 PE... [more]
A0A5C7IIT49.6e-0936.17Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1[more]
A0A2N9H5851.3e-0836.17RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34683 ... [more]
A0A5J9SXC33.6e-0847.06RNase H domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=E... [more]
V4UMR38.1e-0839.18RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CI... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 5..94
e-value: 5.4E-20
score: 71.5
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..94
e-value: 3.3E-13
score: 51.8
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 10..94
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 10..94
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 6..94
e-value: 3.3516E-17
score: 68.4948
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 9..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0016831.1Sed0016831.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity