Sed0013805 (gene) Chayote v1

Overview


Name	Sed0013805
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Arabinogalactan peptide 23
Location	LG12: 8835573 .. 8835755 (+)
RNA-Seq Expression	Sed0013805
Synteny	Sed0013805

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATGAAGAAGGTTATCTGCACCGTTCTCGTTGTCGCTTCTGCCGTTAGTGCCGCTATGGCCTCAAGTGAAGGCCCGGCTCCTGCCCCGGGCCCGTCCTCAGGCACAACTGCTGCTGCTCTTCCGGCTGTTGGCGCTATCATTGGTGCTTCTGTTGCATCCTTCTTTGCTTGCTTGTAA

mRNA sequence

ATGAACATGAAGAAGGTTATCTGCACCGTTCTCGTTGTCGCTTCTGCCGTTAGTGCCGCTATGGCCTCAAGTGAAGGCCCGGCTCCTGCCCCGGGCCCGTCCTCAGGCACAACTGCTGCTGCTCTTCCGGCTGTTGGCGCTATCATTGGTGCTTCTGTTGCATCCTTCTTTGCTTGCTTGTAA

Coding sequence (CDS)

ATGAACATGAAGAAGGTTATCTGCACCGTTCTCGTTGTCGCTTCTGCCGTTAGTGCCGCTATGGCCTCAAGTGAAGGCCCGGCTCCTGCCCCGGGCCCGTCCTCAGGCACAACTGCTGCTGCTCTTCCGGCTGTTGGCGCTATCATTGGTGCTTCTGTTGCATCCTTCTTTGCTTGCTTGTAA

Protein sequence

MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFACL

Homology

[Close]

BLAST of Sed0013805 vs. NCBI nr
Match: XP_038906349.1 (arabinogalactan protein 23 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M+MKKV C VLV A+ +SA MAS EGPAPAPG SS   AAALPAVGA IGAS+ASFFA
Sbjct: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFA 58

[Close]

BLAST of Sed0013805 vs. NCBI nr
Match: KAA0043704.1 (Arabinogalactan peptide 23 [Cucumis melo var. makuwa] >TYK25430.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M+MKKV C VLV A+AVSA MA+SEGPAPAP  SS  T AALPAVGA IGAS+ SFFA
Sbjct: 1  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDAT-AALPAVGAFIGASLVSFFA 57

[Close]

BLAST of Sed0013805 vs. NCBI nr
Match: KRH33040.1 (hypothetical protein GLYMA_10G094600v4 [Glycine max])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M+MKKV C VL+ A+++SAA+A++E PAPAPGPSSG +AAA  AVG+++GASV SFFA
Sbjct: 1  MDMKKVTCAVLIAAASMSAALAATEVPAPAPGPSSGASAAA--AVGSLVGASVLSFFA 56

[Close]

BLAST of Sed0013805 vs. NCBI nr
Match: KYP55928.1 (hypothetical protein KK1_002155 [Cajanus cajan])

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M+MKKV C VL+ A++VSAA+A++E PAPAPGPSSG  +A LP VG+++GASV SFFA
Sbjct: 1  MDMKKVTCVVLMAAASVSAAVAATEVPAPAPGPSSG-ASATLPLVGSLVGASVLSFFA 57

[Close]

BLAST of Sed0013805 vs. NCBI nr
Match: KYP55935.1 (hypothetical protein KK1_002162 [Cajanus cajan])

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M+MKKV C VL+ A+++SAA+A++E PAPAPGPSSG  +A LP VG+++GASV SFFA
Sbjct: 1  MDMKKVTCVVLIAAASMSAAVAATEVPAPAPGPSSG-ASATLPLVGSLVGASVLSFFA 57

[Close]

BLAST of Sed0013805 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 3.0e-05
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M MKK+ C VL  A++++A MA+ E  APAPGP+S   +AALPA+G+++GAS+ S F+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPAS-AASAALPALGSLVGASLVSLFS 57

[Close]

BLAST of Sed0013805 vs. ExPASy TrEMBL
Match: A0A5D3DQ83 (Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005730 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-08
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M+MKKV C VLV A+AVSA MA+SEGPAPAP  SS  T AALPAVGA IGAS+ SFFA
Sbjct: 1  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSDAT-AALPAVGAFIGASLVSFFA 57

[Close]

BLAST of Sed0013805 vs. ExPASy TrEMBL
Match: I1L9W6 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_10G094600 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-07
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M+MKKV C VL+ A+++SAA+A++E PAPAPGPSSG +AAA  AVG+++GASV SFFA
Sbjct: 1  MDMKKVTCAVLIAAASMSAALAATEVPAPAPGPSSGASAAA--AVGSLVGASVLSFFA 56

[Close]

BLAST of Sed0013805 vs. ExPASy TrEMBL
Match: A0A151SMB5 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_002155 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.8e-07
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M+MKKV C VL+ A++VSAA+A++E PAPAPGPSSG  +A LP VG+++GASV SFFA
Sbjct: 1  MDMKKVTCVVLMAAASVSAAVAATEVPAPAPGPSSG-ASATLPLVGSLVGASVLSFFA 57

[Close]

BLAST of Sed0013805 vs. ExPASy TrEMBL
Match: A0A151SMD0 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_002162 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M+MKKV C VL+ A+++SAA+A++E PAPAPGPSSG  +A LP VG+++GASV SFFA
Sbjct: 1  MDMKKVTCVVLIAAASMSAAVAATEVPAPAPGPSSG-ASATLPLVGSLVGASVLSFFA 57

[Close]

BLAST of Sed0013805 vs. ExPASy TrEMBL
Match: K7KXD9 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G257800 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M+MKKV C VL+ A++VSA +A++E PAPAPGPSSG  +A+LP +G+++GASV SFFA
Sbjct: 1  MDMKKVTCAVLIAAASVSAVVAATEVPAPAPGPSSG-ASASLPLIGSLVGASVLSFFA 57

[Close]

BLAST of Sed0013805 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 48.5 bits (114), Expect = 2.2e-06
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M MKK+ C VL  A++++A MA+ E  APAPGP+S   +AALPA+G+++GAS+ S F+
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPAS-AASAALPALGSLVGASLVSLFS 57

[Close]

BLAST of Sed0013805 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 1.8e-05
Identity = 27/58 (46.55%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 1  MNMKKVICTVLVVASAVSAAMASSEGPAPAPGPSSGTTAAALPAVGAIIGASVASFFA 59
          M MKK+ C V+  A++++A MA+  G APAPGP++   + A+PA+G+++GAS+ S FA
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG-APAPGPAASGASVAVPALGSLVGASLVSLFA 57

The following BLAST results are available for this feature:

BLAST of Sed0013805 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906349.1	1.3e-08	74.14	arabinogalactan protein 23 [Benincasa hispida]	[more]
KAA0043704.1	1.4e-07	74.14	Arabinogalactan peptide 23 [Cucumis melo var. makuwa] >TYK25430.1 Arabinogalacta...	[more]
KRH33040.1	1.2e-06	65.52	hypothetical protein GLYMA_10G094600v4 [Glycine max]	[more]
KYP55928.1	2.0e-06	65.52	hypothetical protein KK1_002155 [Cajanus cajan]	[more]
KYP55935.1	2.6e-06	63.79	hypothetical protein KK1_002162 [Cajanus cajan]	[more]

BLAST of Sed0013805 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	3.0e-05	51.72	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Sed0013805 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DQ83	6.8e-08	74.14	Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
I1L9W6	5.7e-07	65.52	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_10G094600 PE=4 SV=1	[more]
A0A151SMB5	9.8e-07	65.52	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_002155 PE=4 SV=1	[more]
A0A151SMD0	1.3e-06	63.79	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_002162 PE=4 SV=1	[more]
K7KXD9	1.7e-06	62.07	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G257800 PE=4 SV=1	[more]

BLAST of Sed0013805 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	2.2e-06	51.72	arabinogalactan protein 23	[more]
AT2G41905.1	1.8e-05	46.55	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..58
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013805.1	Sed0013805.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane