Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCGAACGTAACCGCGTAACCGCATCATTTGAAAGTTATAATATATCGAATTTAGAACCGCCTTTATAGAAAACGTAGGAATCGTCAAACACGTATTCCAAAGGCAAATTCTAAGCATCTTCTCTCTCTATATAATCCCAATCCATTATATATCATTTCCTTTCTTTCATTCCCTTATTTATCTTTTCACCACCAAATCGCTCCGATTATTAATGGTTTCCACCAAATCCCTCGTTTCCATAGCTTTCATCGCTCTTCTCTTCTTCTCCGAATCCCTCGCCACCACTTCTGCCGCCGGCTGCGGCGGCGATTCCAAGTCCCTCACCGGAAATCCCCGTCGGAACATTCTTCAGACGGCGGCGCATGAGTCGAGCTTGGATGGGAAGATGAATGTTCATGTAAAAAGGGTGCGGTTTACTCGACCTGTGACTACTGGCACTACCGGCCGTAGATCGGCGGCCAATCGGAGCTCAGTGCCGGCTTCTGGCGTTGGATCTGTGCTCTCTCTCTTCGTTTTTCTCGGATTCTTCTTCTGATTTTTTTTTTTTTAATTTTTGTGAAAATTTGGGGTTGTTATTAATTAAGGCTGTAATATTGTTTCATAAGATCATGATACCATTTTCATTCATTCACTTCTAGATTGACGATTGTCATTGAGTAATCACTATTATTTAATCTTAACTCTCTTTTTGGAA
mRNA sequence
AGCGAACGTAACCGCGTAACCGCATCATTTGAAAGTTATAATATATCGAATTTAGAACCGCCTTTATAGAAAACGTAGGAATCGTCAAACACGTATTCCAAAGGCAAATTCTAAGCATCTTCTCTCTCTATATAATCCCAATCCATTATATATCATTTCCTTTCTTTCATTCCCTTATTTATCTTTTCACCACCAAATCGCTCCGATTATTAATGGTTTCCACCAAATCCCTCGTTTCCATAGCTTTCATCGCTCTTCTCTTCTTCTCCGAATCCCTCGCCACCACTTCTGCCGCCGGCTGCGGCGGCGATTCCAAGTCCCTCACCGGAAATCCCCGTCGGAACATTCTTCAGACGGCGGCGCATGAGTCGAGCTTGGATGGGAAGATGAATGTTCATGTAAAAAGGGTGCGGTTTACTCGACCTGTGACTACTGGCACTACCGGCCGTAGATCGGCGGCCAATCGGAGCTCAGTGCCGGCTTCTGGCGTTGGATCTGTGCTCTCTCTCTTCGTTTTTCTCGGATTCTTCTTCTGATTTTTTTTTTTTTAATTTTTGTGAAAATTTGGGGTTGTTATTAATTAAGGCTGTAATATTGTTTCATAAGATCATGATACCATTTTCATTCATTCACTTCTAGATTGACGATTGTCATTGAGTAATCACTATTATTTAATCTTAACTCTCTTTTTGGAA
Coding sequence (CDS)
ATGGTTTCCACCAAATCCCTCGTTTCCATAGCTTTCATCGCTCTTCTCTTCTTCTCCGAATCCCTCGCCACCACTTCTGCCGCCGGCTGCGGCGGCGATTCCAAGTCCCTCACCGGAAATCCCCGTCGGAACATTCTTCAGACGGCGGCGCATGAGTCGAGCTTGGATGGGAAGATGAATGTTCATGTAAAAAGGGTGCGGTTTACTCGACCTGTGACTACTGGCACTACCGGCCGTAGATCGGCGGCCAATCGGAGCTCAGTGCCGGCTTCTGGCGTTGGATCTGTGCTCTCTCTCTTCGTTTTTCTCGGATTCTTCTTCTGA
Protein sequence
MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHESSLDGKMNVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGVGSVLSLFVFLGFFF
Homology
BLAST of Sed0013496 vs. NCBI nr
Match:
KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 67/113 (59.29%), Postives = 75/113 (66.37%), Query Frame = 0
Query: 1 MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ES 60
M + KSLVS+A +ALL FSESL T SA GDS SLTG RRN+LQTAAH ES
Sbjct: 1 MAALKSLVSVALLALLLFSESL-TASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVES 60
Query: 61 SLDGKMNVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGVGSVLSLFVFLGFF 107
S + KMNVH+K R RPV TGT R SAANRS + + GVGSVL V LG F
Sbjct: 61 SPERKMNVHIK--RRMRPVATGT--RSSAANRSRIASIGVGSVL---VVLGLF 105
BLAST of Sed0013496 vs. NCBI nr
Match:
KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])
HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 0
Query: 1 MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKM 60
M + KSL+SI+ +ALLFFSESL +TSAA C G S S+T RRNILQTA HE + +GKM
Sbjct: 1 MAAIKSLISISLLALLFFSESL-STSAANCRGASNSVTAMLRRNILQTATHEIADSEGKM 60
Query: 61 NVHVKR---VRFTRPV--TTGTTGRRSAANRSSVPASGVGSVLSLF 101
NV +K+ RF RP+ TGT R SAANRS V + G+G +L F
Sbjct: 61 NVRIKKGGLGRF-RPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFF 104
BLAST of Sed0013496 vs. NCBI nr
Match:
KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])
HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 0
Query: 1 MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKM 60
M + KSL+ I+ +ALLFFSESL +TSAA C G S S+TG RRN+LQTA HE + +GKM
Sbjct: 1 MAAIKSLLFISLLALLFFSESL-STSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKM 60
Query: 61 NVHVKR--VRFTRPVTTGT--TG-RRSAANRSSVPASGVGSVL 98
NVH+KR RPV GT TG R+SAA+RS V + G+G +L
Sbjct: 61 NVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLL 102
BLAST of Sed0013496 vs. NCBI nr
Match:
KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 57/107 (53.27%), Postives = 66/107 (61.68%), Query Frame = 0
Query: 1 MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAA-HESSLDGKM 60
M + K+L+SIA IALL F ESL TSAA G S SL G RRNI+QT A H + K
Sbjct: 1 MAAIKALLSIALIALLLFFESL-PTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKF 60
Query: 61 NVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGVGSVLSLFVFLGFF 107
NVH+KR RPV G + SAANRS GVGS+L +FV LG F
Sbjct: 61 NVHIKRRMRMRPVLIGRP-KTSAANRSREAFCGVGSMLCIFVLLGLF 105
BLAST of Sed0013496 vs. NCBI nr
Match:
KAA0046715.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])
HSP 1 Score: 67.8 bits (164), Expect = 6.6e-08
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 0
Query: 1 MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ES 60
M + + LVSIA +ALLFFSESL T S SLTG P RNIL T AH ES
Sbjct: 1 MAAIRPLVSIALLALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVES 60
Query: 61 SLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSVPASGVGSVLSLFVFLGFF 107
S K N +H K R RP+ +G+ G +SA NRS V + VGS+L + +FLG F
Sbjct: 61 SYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLF 108
BLAST of Sed0013496 vs. ExPASy TrEMBL
Match:
A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 0
Query: 1 MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKM 60
M + KSL+ I+ +ALLFFSESL +TSAA C G S S+TG RRN+LQTA HE + +GKM
Sbjct: 1 MAAIKSLLFISLLALLFFSESL-STSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKM 60
Query: 61 NVHVKR--VRFTRPVTTGT--TG-RRSAANRSSVPASGVGSVL 98
NVH+KR RPV GT TG R+SAA+RS V + G+G +L
Sbjct: 61 NVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLL 102
BLAST of Sed0013496 vs. ExPASy TrEMBL
Match:
A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 0
Query: 1 MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKM 60
M + KSL+SI+ +ALLFFSESL +TSAA C G S S+T RRNILQTA HE + +GKM
Sbjct: 1 MAAIKSLISISLLALLFFSESL-STSAANCRGASNSVTAMLRRNILQTATHEIADSEGKM 60
Query: 61 NVHVKR---VRFTRPV--TTGTTGRRSAANRSSVPASGVGSVLSLF 101
NV +K+ RF RP+ TGT R SAANRS V + G+G +L F
Sbjct: 61 NVRIKKGGLGRF-RPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFF 104
BLAST of Sed0013496 vs. ExPASy TrEMBL
Match:
A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 3.2e-08
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 0
Query: 1 MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ES 60
M + + LVSIA +ALLFFSESL T S SLTG P RNIL T AH ES
Sbjct: 1 MAAIRPLVSIALLALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVES 60
Query: 61 SLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSVPASGVGSVLSLFVFLGFF 107
S K N +H K R RP+ +G+ G +SA NRS V + VGS+L + +FLG F
Sbjct: 61 SYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLF 108
BLAST of Sed0013496 vs. ExPASy TrEMBL
Match:
A0A0A0K929 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1)
HSP 1 Score: 58.2 bits (139), Expect = 2.5e-05
Identity = 51/123 (41.46%), Postives = 67/123 (54.47%), Query Frame = 0
Query: 1 MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHESSLDGKM- 60
M + + L+SIAF+AL FFSESL T S SLTG P R IL TAAH +DG +
Sbjct: 1 MAAIRPLLSIAFLALFFFSESLLT---------SHSLTGIPHRTILNTAAHR-IVDGSVE 60
Query: 61 ----------NVHVKRVRFTR--PVTTGTTG---RRSAANRSSVPAS-GVGSVLSLFVFL 107
+H+K +R R P+ ++ +SAANR S AS VGS+L + +FL
Sbjct: 61 YSSYQIRKSNKLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFL 113
BLAST of Sed0013496 vs. ExPASy TrEMBL
Match:
A0A1S3BT53 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 2.1e-04
Identity = 47/99 (47.47%), Postives = 55/99 (55.56%), Query Frame = 0
Query: 1 MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ES 60
M + + LVSIA +ALLFFSESL T S SLTG P RNIL T AH ES
Sbjct: 1 MAAIRPLVSIALLALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVES 60
Query: 61 SLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSV 89
S K N +H K R RP+ +G+ G +SA NRS V
Sbjct: 61 SYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRV 90
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6575859.1 | 5.5e-15 | 59.29 | hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN44886.1 | 2.0e-12 | 55.66 | hypothetical protein Csa_015765 [Cucumis sativus] | [more] |
KAA0068047.1 | 2.0e-12 | 56.31 | protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no... | [more] |
KAG6593163.1 | 2.4e-10 | 53.27 | hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0046715.1 | 6.6e-08 | 47.01 | E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VLE5 | 9.5e-13 | 56.31 | Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A0A0KAQ7 | 9.5e-13 | 55.66 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1 | [more] |
A0A5D3D3Y6 | 3.2e-08 | 47.01 | E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN... | [more] |
A0A0A0K929 | 2.5e-05 | 41.46 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1 | [more] |
A0A1S3BT53 | 2.1e-04 | 47.47 | E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P... | [more] |
Match Name | E-value | Identity | Description | |