Sed0013496 (gene) Chayote v1

Overview
NameSed0013496
Typegene
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase MIEL1-like
LocationLG07: 2793472 .. 2794166 (-)
RNA-Seq ExpressionSed0013496
SyntenySed0013496
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCGAACGTAACCGCGTAACCGCATCATTTGAAAGTTATAATATATCGAATTTAGAACCGCCTTTATAGAAAACGTAGGAATCGTCAAACACGTATTCCAAAGGCAAATTCTAAGCATCTTCTCTCTCTATATAATCCCAATCCATTATATATCATTTCCTTTCTTTCATTCCCTTATTTATCTTTTCACCACCAAATCGCTCCGATTATTAATGGTTTCCACCAAATCCCTCGTTTCCATAGCTTTCATCGCTCTTCTCTTCTTCTCCGAATCCCTCGCCACCACTTCTGCCGCCGGCTGCGGCGGCGATTCCAAGTCCCTCACCGGAAATCCCCGTCGGAACATTCTTCAGACGGCGGCGCATGAGTCGAGCTTGGATGGGAAGATGAATGTTCATGTAAAAAGGGTGCGGTTTACTCGACCTGTGACTACTGGCACTACCGGCCGTAGATCGGCGGCCAATCGGAGCTCAGTGCCGGCTTCTGGCGTTGGATCTGTGCTCTCTCTCTTCGTTTTTCTCGGATTCTTCTTCTGATTTTTTTTTTTTTAATTTTTGTGAAAATTTGGGGTTGTTATTAATTAAGGCTGTAATATTGTTTCATAAGATCATGATACCATTTTCATTCATTCACTTCTAGATTGACGATTGTCATTGAGTAATCACTATTATTTAATCTTAACTCTCTTTTTGGAA

mRNA sequence

AGCGAACGTAACCGCGTAACCGCATCATTTGAAAGTTATAATATATCGAATTTAGAACCGCCTTTATAGAAAACGTAGGAATCGTCAAACACGTATTCCAAAGGCAAATTCTAAGCATCTTCTCTCTCTATATAATCCCAATCCATTATATATCATTTCCTTTCTTTCATTCCCTTATTTATCTTTTCACCACCAAATCGCTCCGATTATTAATGGTTTCCACCAAATCCCTCGTTTCCATAGCTTTCATCGCTCTTCTCTTCTTCTCCGAATCCCTCGCCACCACTTCTGCCGCCGGCTGCGGCGGCGATTCCAAGTCCCTCACCGGAAATCCCCGTCGGAACATTCTTCAGACGGCGGCGCATGAGTCGAGCTTGGATGGGAAGATGAATGTTCATGTAAAAAGGGTGCGGTTTACTCGACCTGTGACTACTGGCACTACCGGCCGTAGATCGGCGGCCAATCGGAGCTCAGTGCCGGCTTCTGGCGTTGGATCTGTGCTCTCTCTCTTCGTTTTTCTCGGATTCTTCTTCTGATTTTTTTTTTTTTAATTTTTGTGAAAATTTGGGGTTGTTATTAATTAAGGCTGTAATATTGTTTCATAAGATCATGATACCATTTTCATTCATTCACTTCTAGATTGACGATTGTCATTGAGTAATCACTATTATTTAATCTTAACTCTCTTTTTGGAA

Coding sequence (CDS)

ATGGTTTCCACCAAATCCCTCGTTTCCATAGCTTTCATCGCTCTTCTCTTCTTCTCCGAATCCCTCGCCACCACTTCTGCCGCCGGCTGCGGCGGCGATTCCAAGTCCCTCACCGGAAATCCCCGTCGGAACATTCTTCAGACGGCGGCGCATGAGTCGAGCTTGGATGGGAAGATGAATGTTCATGTAAAAAGGGTGCGGTTTACTCGACCTGTGACTACTGGCACTACCGGCCGTAGATCGGCGGCCAATCGGAGCTCAGTGCCGGCTTCTGGCGTTGGATCTGTGCTCTCTCTCTTCGTTTTTCTCGGATTCTTCTTCTGA

Protein sequence

MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHESSLDGKMNVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGVGSVLSLFVFLGFFF
Homology
BLAST of Sed0013496 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 67/113 (59.29%), Postives = 75/113 (66.37%), Query Frame = 0

Query: 1   MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ES 60
           M + KSLVS+A +ALL FSESL T SA    GDS SLTG  RRN+LQTAAH       ES
Sbjct: 1   MAALKSLVSVALLALLLFSESL-TASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVES 60

Query: 61  SLDGKMNVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGVGSVLSLFVFLGFF 107
           S + KMNVH+K  R  RPV TGT  R SAANRS + + GVGSVL   V LG F
Sbjct: 61  SPERKMNVHIK--RRMRPVATGT--RSSAANRSRIASIGVGSVL---VVLGLF 105

BLAST of Sed0013496 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 0

Query: 1   MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKM 60
           M + KSL+SI+ +ALLFFSESL +TSAA C G S S+T   RRNILQTA HE +  +GKM
Sbjct: 1   MAAIKSLISISLLALLFFSESL-STSAANCRGASNSVTAMLRRNILQTATHEIADSEGKM 60

Query: 61  NVHVKR---VRFTRPV--TTGTTGRRSAANRSSVPASGVGSVLSLF 101
           NV +K+    RF RP+   TGT  R SAANRS V + G+G +L  F
Sbjct: 61  NVRIKKGGLGRF-RPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFF 104

BLAST of Sed0013496 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 0

Query: 1   MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKM 60
           M + KSL+ I+ +ALLFFSESL +TSAA C G S S+TG  RRN+LQTA HE +  +GKM
Sbjct: 1   MAAIKSLLFISLLALLFFSESL-STSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKM 60

Query: 61  NVHVKR--VRFTRPVTTGT--TG-RRSAANRSSVPASGVGSVL 98
           NVH+KR      RPV  GT  TG R+SAA+RS V + G+G +L
Sbjct: 61  NVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLL 102

BLAST of Sed0013496 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 57/107 (53.27%), Postives = 66/107 (61.68%), Query Frame = 0

Query: 1   MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAA-HESSLDGKM 60
           M + K+L+SIA IALL F ESL  TSAA   G S SL G  RRNI+QT A H    + K 
Sbjct: 1   MAAIKALLSIALIALLLFFESL-PTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKF 60

Query: 61  NVHVKRVRFTRPVTTGTTGRRSAANRSSVPASGVGSVLSLFVFLGFF 107
           NVH+KR    RPV  G   + SAANRS     GVGS+L +FV LG F
Sbjct: 61  NVHIKRRMRMRPVLIGRP-KTSAANRSREAFCGVGSMLCIFVLLGLF 105

BLAST of Sed0013496 vs. NCBI nr
Match: KAA0046715.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 6.6e-08
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 0

Query: 1   MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ES 60
           M + + LVSIA +ALLFFSESL T         S SLTG P RNIL T AH       ES
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVES 60

Query: 61  SLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSVPASGVGSVLSLFVFLGFF 107
           S   K N +H K  R  RP+  +G+ G   +SA NRS V +  VGS+L + +FLG F
Sbjct: 61  SYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLF 108

BLAST of Sed0013496 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 0

Query: 1   MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKM 60
           M + KSL+ I+ +ALLFFSESL +TSAA C G S S+TG  RRN+LQTA HE +  +GKM
Sbjct: 1   MAAIKSLLFISLLALLFFSESL-STSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKM 60

Query: 61  NVHVKR--VRFTRPVTTGT--TG-RRSAANRSSVPASGVGSVL 98
           NVH+KR      RPV  GT  TG R+SAA+RS V + G+G +L
Sbjct: 61  NVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLL 102

BLAST of Sed0013496 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 0

Query: 1   MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHE-SSLDGKM 60
           M + KSL+SI+ +ALLFFSESL +TSAA C G S S+T   RRNILQTA HE +  +GKM
Sbjct: 1   MAAIKSLISISLLALLFFSESL-STSAANCRGASNSVTAMLRRNILQTATHEIADSEGKM 60

Query: 61  NVHVKR---VRFTRPV--TTGTTGRRSAANRSSVPASGVGSVLSLF 101
           NV +K+    RF RP+   TGT  R SAANRS V + G+G +L  F
Sbjct: 61  NVRIKKGGLGRF-RPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFF 104

BLAST of Sed0013496 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.2e-08
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 0

Query: 1   MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ES 60
           M + + LVSIA +ALLFFSESL T         S SLTG P RNIL T AH       ES
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVES 60

Query: 61  SLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSVPASGVGSVLSLFVFLGFF 107
           S   K N +H K  R  RP+  +G+ G   +SA NRS V +  VGS+L + +FLG F
Sbjct: 61  SYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLF 108

BLAST of Sed0013496 vs. ExPASy TrEMBL
Match: A0A0A0K929 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.5e-05
Identity = 51/123 (41.46%), Postives = 67/123 (54.47%), Query Frame = 0

Query: 1   MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAHESSLDGKM- 60
           M + + L+SIAF+AL FFSESL T         S SLTG P R IL TAAH   +DG + 
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLT---------SHSLTGIPHRTILNTAAHR-IVDGSVE 60

Query: 61  ----------NVHVKRVRFTR--PVTTGTTG---RRSAANRSSVPAS-GVGSVLSLFVFL 107
                      +H+K +R  R  P+   ++     +SAANR S  AS  VGS+L + +FL
Sbjct: 61  YSSYQIRKSNKLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFL 113

BLAST of Sed0013496 vs. ExPASy TrEMBL
Match: A0A1S3BT53 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-04
Identity = 47/99 (47.47%), Postives = 55/99 (55.56%), Query Frame = 0

Query: 1  MVSTKSLVSIAFIALLFFSESLATTSAAGCGGDSKSLTGNPRRNILQTAAH-------ES 60
          M + + LVSIA +ALLFFSESL T         S SLTG P RNIL T AH       ES
Sbjct: 1  MAAIRPLVSIALLALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVES 60

Query: 61 SLDGKMN-VHVKRVRFTRPV-TTGTTG--RRSAANRSSV 89
          S   K N +H K  R  RP+  +G+ G   +SA NRS V
Sbjct: 61 SYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRV 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575859.15.5e-1559.29hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN44886.12.0e-1255.66hypothetical protein Csa_015765 [Cucumis sativus][more]
KAA0068047.12.0e-1256.31protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no... [more]
KAG6593163.12.4e-1053.27hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0046715.16.6e-0847.01E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VLE59.5e-1356.31Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0KAQ79.5e-1355.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1[more]
A0A5D3D3Y63.2e-0847.01E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A0A0K9292.5e-0541.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1[more]
A0A1S3BT532.1e-0447.47E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0013496.1Sed0013496.1mRNA