Sed0012370 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCAAGCTTCGTTCGGAGGTCTTTTCCTTATGATGGCGGCGATGGCGATAATGGCACTTCTCACCCGAGCTAGAATGGCAGAATCGGCAAGTTGCGACCCGATGGAAATGAGAGCATGTCTTCCTGCATTCAAGTCGTCGGAGCCGCCGACCGCTAAGTGTTGCGAGAAAGCGAAGAAGCAAGAGCCATGCTTTTGTGAATACCTGAAAAGTCCAGTACTGAAGCGTTATTTAGAATCCCCCAACGCAAAAAAGATTGCTGAAACCTGTGGCATTGCCATTCCCACCTGCTAG ATGAAGCAAGCTTCGTTCGGAGGTCTTTTCCTTATGATGGCGGCGATGGCGATAATGGCACTTCTCACCCGAGCTAGAATGGCAGAATCGGCAAGTTGCGACCCGATGGAAATGAGAGCATGTCTTCCTGCATTCAAGTCGTCGGAGCCGCCGACCGCTAAGTGTTGCGAGAAAGCGAAGAAGCAAGAGCCATGCTTTTGTGAATACCTGAAAAGTCCAGTACTGAAGCGTTATTTAGAATCCCCCAACGCAAAAAAGATTGCTGAAACCTGTGGCATTGCCATTCCCACCTGCTAG ATGAAGCAAGCTTCGTTCGGAGGTCTTTTCCTTATGATGGCGGCGATGGCGATAATGGCACTTCTCACCCGAGCTAGAATGGCAGAATCGGCAAGTTGCGACCCGATGGAAATGAGAGCATGTCTTCCTGCATTCAAGTCGTCGGAGCCGCCGACCGCTAAGTGTTGCGAGAAAGCGAAGAAGCAAGAGCCATGCTTTTGTGAATACCTGAAAAGTCCAGTACTGAAGCGTTATTTAGAATCCCCCAACGCAAAAAAGATTGCTGAAACCTGTGGCATTGCCATTCCCACCTGCTAG MKQASFGGLFLMMAAMAIMALLTRARMAESASCDPMEMRACLPAFKSSEPPTAKCCEKAKKQEPCFCEYLKSPVLKRYLESPNAKKIAETCGIAIPTC Homology
BLAST of Sed0012370 vs. NCBI nr
Match: XP_023527041.1 (non-specific lipid-transfer protein 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 137.1 bits (344), Expect = 8.1e-29 Identity = 65/90 (72.22%), Postives = 78/90 (86.67%), Query Frame = 0
BLAST of Sed0012370 vs. NCBI nr
Match: KAG6581740.1 (hypothetical protein SDJN03_21742, partial [Cucurbita argyrosperma subsp. sororia] >KAG6581742.1 hypothetical protein SDJN03_21744, partial [Cucurbita argyrosperma subsp. sororia] >KAG6581745.1 hypothetical protein SDJN03_21747, partial [Cucurbita argyrosperma subsp. sororia] >KAG6581746.1 hypothetical protein SDJN03_21748, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 135.2 bits (339), Expect = 3.1e-28 Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 0
BLAST of Sed0012370 vs. NCBI nr
Match: KAA0064159.1 (non-specific lipid-transfer protein 2-like [Cucumis melo var. makuwa] >TYK02870.1 non-specific lipid-transfer protein 2-like [Cucumis melo var. makuwa]) HSP 1 Score: 134.0 bits (336), Expect = 6.8e-28 Identity = 61/87 (70.11%), Postives = 75/87 (86.21%), Query Frame = 0
BLAST of Sed0012370 vs. NCBI nr
Match: KGN53815.1 (hypothetical protein Csa_014873 [Cucumis sativus]) HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24 Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = 0
BLAST of Sed0012370 vs. NCBI nr
Match: KAB2611859.1 (non-specific lipid-transfer protein 2-like [Pyrus ussuriensis x Pyrus communis]) HSP 1 Score: 108.2 bits (269), Expect = 4.0e-20 Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 0
BLAST of Sed0012370 vs. ExPASy Swiss-Prot
Match: Q43681 (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata OX=3917 PE=2 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15 Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 0
BLAST of Sed0012370 vs. ExPASy Swiss-Prot
Match: P82353 (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca OX=36596 PE=1 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 5.8e-14 Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 0
BLAST of Sed0012370 vs. ExPASy Swiss-Prot
Match: P86809 (Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum OX=278110 PE=1 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.2e-13 Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0
BLAST of Sed0012370 vs. ExPASy Swiss-Prot
Match: A2XBN5 (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=LTP-2 PE=3 SV=2) HSP 1 Score: 71.6 bits (174), Expect = 5.5e-12 Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 0
BLAST of Sed0012370 vs. ExPASy Swiss-Prot
Match: Q10ST8 (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=LTP-2 PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 1.6e-11 Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 0
BLAST of Sed0012370 vs. ExPASy TrEMBL
Match: A0A5A7VF50 (Non-specific lipid-transfer protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00770 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28 Identity = 61/87 (70.11%), Postives = 75/87 (86.21%), Query Frame = 0
BLAST of Sed0012370 vs. ExPASy TrEMBL
Match: A0A0A0KW09 (AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G141230 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 5.8e-25 Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = 0
BLAST of Sed0012370 vs. ExPASy TrEMBL
Match: A0A5N5G8U2 (Non-specific lipid-transfer protein 2-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019891 PE=3 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20 Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 0
BLAST of Sed0012370 vs. ExPASy TrEMBL
Match: A0A6A2X1V6 (Non-specific lipid-transfer protein 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00113338pilonHSYRG00091 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20 Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 0
BLAST of Sed0012370 vs. ExPASy TrEMBL
Match: A0A2C9WL22 (AAI domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_01G112600 PE=4 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 7.4e-20 Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = 0
BLAST of Sed0012370 vs. TAIR 10
Match: AT3G18280.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 86.7 bits (213), Expect = 1.2e-17 Identity = 36/84 (42.86%), Postives = 58/84 (69.05%), Query Frame = 0
BLAST of Sed0012370 vs. TAIR 10
Match: AT1G48750.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 84.7 bits (208), Expect = 4.4e-17 Identity = 35/90 (38.89%), Postives = 60/90 (66.67%), Query Frame = 0
BLAST of Sed0012370 vs. TAIR 10
Match: AT1G07747.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 73.9 bits (180), Expect = 7.8e-14 Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 0
BLAST of Sed0012370 vs. TAIR 10
Match: AT5G38170.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 71.2 bits (173), Expect = 5.1e-13 Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 0
BLAST of Sed0012370 vs. TAIR 10
Match: AT5G38180.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 67.0 bits (162), Expect = 9.5e-12 Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|