Sed0012001 (gene) Chayote v1

Overview


Name	Sed0012001
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box/kelch-repeat protein SKIP30-like
Location	LG09: 36764011 .. 36765048 (-)
RNA-Seq Expression	Sed0012001
Synteny	Sed0012001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAGTCTGATAGATGGTCTCCCTGATGTTGTCGCCCTTACATGTCTTGCTTTTGTCCCGTATTACATGTATCCCAAGTTGGAACTCGTTTCTCGCTCTTGGAAAACTGTATTGCGCAGCGTTGAACTGTTTAGAGAACGACGAGTAGTTGGTTCATCGGAGGATTTTCTCGCTATATGTTGTTATGTTAAAAGTAATATATGGCAGCTTTATGACCCTATTCATAAGCTTTGGATCACCCTCCCTAAAGTTCCTTACAAAATAAGCCATCTTGAAAATTTTGGTGTCATATCTACTTCTCAAAAGATGTTTGTTATTGGTGGTCATATTAAATGTTTCGACAATAATACAACCAATGAGGTATGGTCATTTGATTTTATAACTCGAACATGGTCTATGGTAACACCAATGCTCGTGTCTCGTGCTTTGTTTGCATGTTGCATTGTGGATGGAAAAATTGTAGTCGCAGGTGGCTACACTACCAATAGAGTATACACTTATAAGACAGAAATGTATGACACTGAAAAAGATGTTTGGATTCCATTACCTGATCTACACAAAATTCACCATAGATATTGTGTTGGATTGATGATCGAAGGGAAAATGCACATCAAAAGTTATTCCTTGGTTCAAGTTTTTGACAGTTTGGAAATGAAATGGATAGTTAAGGACAACAAATGCCCTAGTGTTCAAAAGGCTCTTGTTCAAGATTCACTCTATGTCACGAATTGGATCCCAGAGACAGCACATATTAGGATCAAGCAGTGGATCCCGAAAACAGGACATATCATCATCGAGCCGGGTGGACAAGACATGCGAGCTGTTTTGTCACCTCGGCGTTTTCCGGGGGTCGCGATGAATATGGTTGGTTTTAGAGGCGAGCTGGATATGATTGGAGCCATGGTTAATGGTCGACATAAATATGATGGGTTTATTCTTAACGTGGAGGATGAGAAACCAACTTGGCGTCGTGGTATACCAATGAGTCCACGATGCTATGGAATTGTTCATGCGTGCATGGAGGTTAAAATATAG

mRNA sequence

ATGCCTAGTCTGATAGATGGTCTCCCTGATGTTGTCGCCCTTACATGTCTTGCTTTTGTCCCGTATTACATGTATCCCAAGTTGGAACTCGTTTCTCGCTCTTGGAAAACTGTATTGCGCAGCGTTGAACTGTTTAGAGAACGACGAGTAGTTGGTTCATCGGAGGATTTTCTCGCTATATGTTGTTATGTTAAAAGTAATATATGGCAGCTTTATGACCCTATTCATAAGCTTTGGATCACCCTCCCTAAAGTTCCTTACAAAATAAGCCATCTTGAAAATTTTGGTGTCATATCTACTTCTCAAAAGATGTTTGTTATTGGTGGTCATATTAAATGTTTCGACAATAATACAACCAATGAGGTATGGTCATTTGATTTTATAACTCGAACATGGTCTATGGTAACACCAATGCTCGTGTCTCGTGCTTTGTTTGCATGTTGCATTGTGGATGGAAAAATTGTAGTCGCAGGTGGCTACACTACCAATAGAGTATACACTTATAAGACAGAAATGTATGACACTGAAAAAGATGTTTGGATTCCATTACCTGATCTACACAAAATTCACCATAGATATTGTGTTGGATTGATGATCGAAGGGAAAATGCACATCAAAAGTTATTCCTTGGTTCAAGTTTTTGACAGTTTGGAAATGAAATGGATAGTTAAGGACAACAAATGCCCTAGTGTTCAAAAGGCTCTTGTTCAAGATTCACTCTATGTCACGAATTGGATCCCAGAGACAGCACATATTAGGATCAAGCAGTGGATCCCGAAAACAGGACATATCATCATCGAGCCGGGTGGACAAGACATGCGAGCTGTTTTGTCACCTCGGCGTTTTCCGGGGGTCGCGATGAATATGGTTGGTTTTAGAGGCGAGCTGGATATGATTGGAGCCATGGTTAATGGTCGACATAAATATGATGGGTTTATTCTTAACGTGGAGGATGAGAAACCAACTTGGCGTCGTGGTATACCAATGAGTCCACGATGCTATGGAATTGTTCATGCGTGCATGGAGGTTAAAATATAG

Coding sequence (CDS)

ATGCCTAGTCTGATAGATGGTCTCCCTGATGTTGTCGCCCTTACATGTCTTGCTTTTGTCCCGTATTACATGTATCCCAAGTTGGAACTCGTTTCTCGCTCTTGGAAAACTGTATTGCGCAGCGTTGAACTGTTTAGAGAACGACGAGTAGTTGGTTCATCGGAGGATTTTCTCGCTATATGTTGTTATGTTAAAAGTAATATATGGCAGCTTTATGACCCTATTCATAAGCTTTGGATCACCCTCCCTAAAGTTCCTTACAAAATAAGCCATCTTGAAAATTTTGGTGTCATATCTACTTCTCAAAAGATGTTTGTTATTGGTGGTCATATTAAATGTTTCGACAATAATACAACCAATGAGGTATGGTCATTTGATTTTATAACTCGAACATGGTCTATGGTAACACCAATGCTCGTGTCTCGTGCTTTGTTTGCATGTTGCATTGTGGATGGAAAAATTGTAGTCGCAGGTGGCTACACTACCAATAGAGTATACACTTATAAGACAGAAATGTATGACACTGAAAAAGATGTTTGGATTCCATTACCTGATCTACACAAAATTCACCATAGATATTGTGTTGGATTGATGATCGAAGGGAAAATGCACATCAAAAGTTATTCCTTGGTTCAAGTTTTTGACAGTTTGGAAATGAAATGGATAGTTAAGGACAACAAATGCCCTAGTGTTCAAAAGGCTCTTGTTCAAGATTCACTCTATGTCACGAATTGGATCCCAGAGACAGCACATATTAGGATCAAGCAGTGGATCCCGAAAACAGGACATATCATCATCGAGCCGGGTGGACAAGACATGCGAGCTGTTTTGTCACCTCGGCGTTTTCCGGGGGTCGCGATGAATATGGTTGGTTTTAGAGGCGAGCTGGATATGATTGGAGCCATGGTTAATGGTCGACATAAATATGATGGGTTTATTCTTAACGTGGAGGATGAGAAACCAACTTGGCGTCGTGGTATACCAATGAGTCCACGATGCTATGGAATTGTTCATGCGTGCATGGAGGTTAAAATATAG

Protein sequence

MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAICCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCFDNNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEMYDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHIKSYSLVQVFDSLEMKWIVKDNKCPSVQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRFPGVAMNMVGFRGELDMIGAMVNGRHKYDGFILNVEDEKPTWRRGIPMSPRCYGIVHACMEVKI

Homology

[Close]

BLAST of Sed0012001 vs. NCBI nr
Match: XP_022953500.1 (F-box/kelch-repeat protein SKIP30-like [Cucurbita moschata] >XP_022953501.1 F-box/kelch-repeat protein SKIP30-like [Cucurbita moschata])

HSP 1 Score: 349.4 bits (895), Expect = 3.6e-92
Identity = 185/359 (51.53%), Postives = 232/359 (64.62%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  LI+GLPD +++ CLAFVPYY++PKLELVSRSWK  +RS ELFR R+ VGSSED L +
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCF------ 120
           C Y  +N WQLYDP+  LW+TLP++P KI+HL NFGV+STSQK+FV+GG           
Sbjct: 61  CSYDPNNTWQLYDPLQNLWMTLPELPSKITHLANFGVVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 --DNNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
             DN++TNEVWSFD +TRTWSM  PMLV R  FACC+VDGKIVVAGG+T+    T + EM
Sbjct: 121 REDNSSTNEVWSFDPVTRTWSMRAPMLVPRYTFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHIK--SYSLVQVFDSLEMKWIVKDNKCPS 240
           YD EKDVWIPLPDL   H   C+GLMI GKMH+     S VQVFDSLE+KW V+D     
Sbjct: 181 YDNEKDVWIPLPDLLHTHDSTCIGLMIGGKMHVMYGGVSTVQVFDSLELKWRVEDYGWLP 240

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRF-PGVAMNM 300
             KA+V  SLY                   +  ++ +   +D +AV+S  +F   + M +
Sbjct: 241 GHKAVVGGSLYT-----------------MSQGLVFKQEERDAQAVVSASQFVQRIGMAI 300

Query: 301 VGFRGELDMIGAMVNGRHKYDG--------FILNVEDEKPTWRRGIPMSPRCYGIVHAC 341
           VGFRGEL +IG +V    ++DG         +L V +EKP+W    PMS RC G V  C
Sbjct: 301 VGFRGELYVIGGVVR-PERFDGDLVKLSDVHVLKVRNEKPSWYCAAPMS-RCSGTVLGC 340

[Close]

BLAST of Sed0012001 vs. NCBI nr
Match: KAG7014455.1 (F-box/kelch-repeat protein SKIP30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.4 bits (890), Expect = 1.4e-91
Identity = 186/358 (51.96%), Postives = 231/358 (64.53%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  LI+GLPD +++ CLAFVPYY++PKLELVSRSWK  +RS ELFR R+ VGSSED L +
Sbjct: 63  MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 122

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCF------ 120
           C Y  +N WQLYDP+  LW+TLP++P KI HL NFG +STSQK+FV+GG           
Sbjct: 123 CSYDPNNTWQLYDPLQNLWMTLPELPSKIRHLANFGAVSTSQKLFVLGGRGDAVDPVTGD 182

Query: 121 --DNNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
             DN++TNEVWSFD +TRTWSM  PMLV R+ FACC+VDGKIVVAGG+T+    T + EM
Sbjct: 183 RDDNSSTNEVWSFDPVTRTWSMRAPMLVPRSTFACCVVDGKIVVAGGFTSLSKSTSQAEM 242

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHIK--SYSLVQVFDSLEMKWIVKDNKCPS 240
           YD+EKDVWIPLPDL   H   C+GLMI G+MHI     S VQVFDSLE+KW V+D     
Sbjct: 243 YDSEKDVWIPLPDLLHTHDSTCIGLMIGGRMHIMYGGVSTVQVFDSLELKWRVEDYGWLP 302

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRF-PGVAMNM 300
             KA+V  SLY                   +  ++ +   +D +AV+S  +F   + M M
Sbjct: 303 GHKAVVGGSLYT-----------------MSQGLVFKQEERDAQAVVSASQFVQRIGMAM 362

Query: 301 VGFRGELDMIGAMV-----NGR--HKYDGFILNVEDEKPTWRRGIPMSPRCYGIVHAC 341
           VGFRGEL +IG +V     NG      D  +L V +EKP+W    PMS RC G V  C
Sbjct: 363 VGFRGELYVIGGVVRPERFNGDLVKLSDVHVLQVRNEKPSWSCAAPMS-RCSGTVLGC 402

[Close]

BLAST of Sed0012001 vs. NCBI nr
Match: KAG6575922.1 (F-box/kelch-repeat protein SKIP30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347.4 bits (890), Expect = 1.4e-91
Identity = 186/358 (51.96%), Postives = 231/358 (64.53%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  LI+GLPD +++ CLAFVPYY++PKLELVSRSWK  +RS ELFR R+ VGSSED L +
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCF------ 120
           C Y  +N WQLYDP+  LW+TLP++P KI HL NFG +STSQK+FV+GG           
Sbjct: 61  CSYDPNNTWQLYDPLQNLWMTLPELPSKIRHLANFGAVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 --DNNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
             DN++TNEVWSFD +TRTWSM  PMLV R+ FACC+VDGKIVVAGG+T+    T + EM
Sbjct: 121 RDDNSSTNEVWSFDPVTRTWSMRAPMLVPRSTFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHIK--SYSLVQVFDSLEMKWIVKDNKCPS 240
           YD+EKDVWIPLPDL   H   C+GLMI G+MHI     S VQVFDSLE+KW V+D     
Sbjct: 181 YDSEKDVWIPLPDLLHTHDSTCIGLMIGGRMHIMYGGVSTVQVFDSLELKWRVEDYGWLP 240

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRF-PGVAMNM 300
             KA+V  SLY                   +  ++ +   +D +AV+S  +F   + M M
Sbjct: 241 GHKAVVGGSLYT-----------------MSQGLVFKQEERDAQAVVSASQFVQRIGMAM 300

Query: 301 VGFRGELDMIGAMV-----NGR--HKYDGFILNVEDEKPTWRRGIPMSPRCYGIVHAC 341
           VGFRGEL +IG +V     NG      D  +L V +EKP+W    PMS RC G V  C
Sbjct: 301 VGFRGELYVIGGVVRPERFNGDLVKLSDVHVLQVRNEKPSWSCAAPMS-RCSGTVLGC 340

[Close]

BLAST of Sed0012001 vs. NCBI nr
Match: XP_004146975.1 (F-box/kelch-repeat protein SKIP30 [Cucumis sativus] >KGN44794.1 hypothetical protein Csa_016402 [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 9.0e-91
Identity = 182/363 (50.14%), Postives = 230/363 (63.36%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  LI+GLPD ++L CLA++PYY++PKLELVSRSWK  +RSVELFR R+ VG SEDFL +
Sbjct: 1   MSGLIEGLPDAISLRCLAYIPYYLHPKLELVSRSWKAAIRSVELFRARQEVGFSEDFLCV 60

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCF------ 120
           C Y  +N WQLYDP+   W+TLP++P K  HL NF  +STSQK+FV+GG           
Sbjct: 61  CSYHPNNTWQLYDPLPNRWMTLPELPSKRMHLGNFCAVSTSQKLFVLGGRSDAVDPVTGD 120

Query: 121 --DNNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
             DN +TNEVWSFD ITRTWSM  PMLV RA+FACC+VDGKI+VAGG+T+    T K EM
Sbjct: 121 RDDNFSTNEVWSFDPITRTWSMRAPMLVPRAMFACCVVDGKIIVAGGFTSKSKSTSKAEM 180

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHI--KSYSLVQVFDSLEMKWIVKDNKCPS 240
           YD+EKDVW PLPDL + H   C+GL++ GKMHI     S VQV DS EMKW V+D     
Sbjct: 181 YDSEKDVWTPLPDLLQTHDSTCIGLVVRGKMHIVYNKVSTVQVLDSSEMKWRVEDYGWVL 240

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRF-PGVAMNM 300
             KA+V DSLYV N              P  G ++ +  G+  + +    +F   + M +
Sbjct: 241 GLKAVVGDSLYVMN--------------PLEG-VVFKQYGRTWKVIALATQFAQRIGMAV 300

Query: 301 VGFRGELDMIGAMVNGRHK-------YDGFILNVEDEKPTWRRGIPMSPRCYGIVHACME 346
           VGFRG+L  IG  ++            D  +LN+ DE+PTWR    MS RC G V  C E
Sbjct: 301 VGFRGDLYAIGGGIHPNRTGGDLTKLSDVHVLNLRDEEPTWRCAAQMS-RCQGTVLGCTE 347

[Close]

BLAST of Sed0012001 vs. NCBI nr
Match: XP_023547905.1 (F-box/kelch-repeat protein SKIP30-like [Cucurbita pepo subsp. pepo] >XP_023547906.1 F-box/kelch-repeat protein SKIP30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.0 bits (881), Expect = 1.5e-90
Identity = 182/364 (50.00%), Postives = 235/364 (64.56%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  LI+GLPD +++ CLAFVPYY++PKLELVSRSWK  +RS ELFR R+ VGSSED L +
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCF------ 120
           C Y  +N WQLYDP+  LW+T+P++P KI HL NFG +STSQK+FV+GG           
Sbjct: 61  CSYDPNNTWQLYDPLQNLWMTIPELPSKIRHLANFGAVSTSQKLFVLGGCGDAIDPVTGD 120

Query: 121 --DNNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
             DN++TNEVWSFD +TRTWS+  PMLV R+ FACC+VDGKIVVAGG+T+    T + EM
Sbjct: 121 RDDNSSTNEVWSFDPVTRTWSLRAPMLVPRSTFACCVVDGKIVVAGGFTSISKSTSQAEM 180

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHIK--SYSLVQVFDSLEMKWIVKDNKCPS 240
           YD EKDVWIPLPDL   H   C+GLMI GKM+I     S VQVFDSLE+KW V+D     
Sbjct: 181 YDNEKDVWIPLPDLLHTHDSTCIGLMIGGKMNIMYGGVSTVQVFDSLELKWRVEDYGWLP 240

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRF-PGVAMNM 300
             KA+V  SLY                   +  ++ +   +D++AV+S  +F   + M +
Sbjct: 241 GHKAVVGGSLYT-----------------MSQGLVFKQEERDVQAVVSASQFVQRIGMAI 300

Query: 301 VGFRGELDMIGAMVNGRHKYDG--------FILNVEDEKPTWRRGIPMSPRCYGIVHACM 346
           VGFRGEL +IG +V    ++DG         +L V +EKP+W    PMS +C G V  C 
Sbjct: 301 VGFRGELYVIGGVVR-PERFDGDLVKLSDVHVLKVRNEKPSWCCAAPMS-QCSGTVLGCT 345

[Close]

BLAST of Sed0012001 vs. ExPASy Swiss-Prot
Match: Q9M1W7 (F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1 SV=2)

HSP 1 Score: 263.8 bits (673), Expect = 2.6e-69
Identity = 140/363 (38.57%), Postives = 203/363 (55.92%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  L+DG+P+ VAL CLA VP +++P LELVSRSW+  +RS ELFR R+ + SSE  L +
Sbjct: 8   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 67

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCFDNNT-- 120
           C +   NIWQ+Y P    W+TLP +P +I HL +FG ++T+  +FV+GG        T  
Sbjct: 68  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 127

Query: 121 ------TNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
                 T++VWS+DF+ R W+    MLV RA+FACC++ GKIVVAGG+TT R      EM
Sbjct: 128 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 187

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHI--KSYSLVQVFDSLEMKWIVKDNKCPS 240
           YD E DVW  +PDLH+ H+  C GL++ GK+H+  K  S VQV +S+++ W VKD   P 
Sbjct: 188 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 247

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRFP-GVAMNM 300
               +V+D LYV                  +  ++ +  G   + V S   F   + M M
Sbjct: 248 GPMVVVEDVLYV-----------------MSHGLVFKQEGDTWKMVASASEFKRRIGMAM 307

Query: 301 VGFRGELDMIGAMVNG-------RHKYDGFILNVEDEKPTWRRGIPMSPRCYGIVHACME 346
                E+ ++G ++         +   D   L V +++P WR   PM+ RC G +  C +
Sbjct: 308 TSLSDEVLIVGGVIGPDRLNWDIKPLSDVDALTVGNDRPAWRSVAPMT-RCRGTILGCTQ 352

[Close]

BLAST of Sed0012001 vs. ExPASy Swiss-Prot
Match: Q0WW40 (F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana OX=3702 GN=At1g16250 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-22
Identity = 99/382 (25.92%), Postives = 152/382 (39.79%), Query Frame = 0


Query: 3   SLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAICC 62
           S+I GLPD +AL C+A + +  +  LE VSR W+ ++R  +    +   G S  +L +  
Sbjct: 7   SIIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLT 66

Query: 63  YVKSNIWQLYDPIHKLWITLPKVPYKIS--HLENFGVISTSQKMFVIGG----HIKCFDN 122
               N W  YDP    W  LP+        H   F  +  S  + VIGG     +  F +
Sbjct: 67  ERSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGGCYAPSVSSFPH 126

Query: 123 N---TTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYT-TNRVYTYKTEM 182
                T +V  FD   + W MV  M   R  FAC  V GK+ VAGG   T+       E+
Sbjct: 127 QKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAEV 186

Query: 183 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHIKS-------YSLVQVFDSLEMKWIVKD 242
           YD   D W  LP + +     C GL   G  H+ S        +  +VF+  +M W   +
Sbjct: 187 YDPVADRWEELPAMPR-PQMDCSGLSYRGCFHVLSDQVGFAEQNSSEVFNPRDMTWSTVE 246

Query: 243 NKCPSVQ------KALVQDSLY-VTNW---IPETAHIRIKQWIPKTGHI--IIEPGGQDM 302
           +  P  +      + +  D +Y + +W   + +T      +W    G +  ++ P     
Sbjct: 247 DVWPFSRAMQFAVQVMKNDRVYTIVDWGESLIKTRDTDEGEWY-NVGSVPSVVLPN---- 306

Query: 303 RAVLSPRRFPGVAMNMVGFRGELDMIGAMV-----NGRHKYDGF------ILNVEDEKPT 345
                PR            R EL +IG  V     +G  ++D        + N  D    
Sbjct: 307 ----HPRELEAFGYGFAALRNELYVIGGKVLKWEESGAGRFDIVRLPVVRVCNPLDRPLN 366

[Close]

BLAST of Sed0012001 vs. ExPASy Swiss-Prot
Match: Q9FKJ0 (F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana OX=3702 GN=At5g60570 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.6e-21
Identity = 71/250 (28.40%), Postives = 114/250 (45.60%), Query Frame = 0


Query: 3   SLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAICC 62
           S++ GL D VAL CLA+VP   YP L  V++ +  ++ S  LF  R+ +G  E  + + C
Sbjct: 48  SVLPGLIDDVALNCLAWVPRSDYPSLSCVNKKYNKLINSGHLFALRKELGIVEYLVFMVC 107

Query: 63  YVKSNIWQLYDPIHKLWITLPKVPYK--ISHLENFGVISTSQKMFVIGGHIKCFDNNTTN 122
             +   W ++ P+ K W+ LPK+P     +H +    ++   ++ V G  +  F      
Sbjct: 108 DPRG--WLMFSPMKKKWMVLPKMPCDECFNHADKES-LAVDDELLVFGRELFQF------ 167

Query: 123 EVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEMYDTEKDVW 182
            +W +   +R W     M   R LFA   + G  +VAGG   N       E+YD+    W
Sbjct: 168 AIWKYSLRSRCWVKCEGMHRPRCLFASGSLGGIAIVAGGTDMNGNILASAELYDSSSGRW 227

Query: 183 IPLPDLHKIHHRYCVGLMIEGKMHI--------KSYSLVQVFDSLEMKWIVKDNKCPSVQ 242
             LP++H    R C G  ++GK ++         S +  + FD    KW   +   P+V 
Sbjct: 228 EMLPNMHS-PRRLCSGFFMDGKFYVIGGMSSPNVSVTFGEEFDLETRKWRKIEGMYPNVN 287

[Close]

BLAST of Sed0012001 vs. ExPASy Swiss-Prot
Match: Q9LYY3 (F-box/kelch-repeat protein At5g03020 OS=Arabidopsis thaliana OX=3702 GN=At5g03020 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.2e-18
Identity = 58/189 (30.69%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 2   PSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAIC 61
           P+    LPD VAL C A +  + YP L LVS+ ++T++ S EL   R  +G  E+ L +C
Sbjct: 14  PTSFSSLPDDVALDCRARISRFHYPTLSLVSKGFRTLIASPELEATRSFIGKPENHLCVC 73

Query: 62  CYVKSN---IWQLYDPIHKLWITLPKVPY--KISHLENFGVISTSQKMFVIGGHIKCFDN 121
             +  N   +W ++ PI K  +  P VP+     + +   V+S   ++++IGG ++    
Sbjct: 74  LRLYKNPNPLWFIFSPIPKQKLK-PIVPWFPNQQYPQYPTVVSNGSQIYIIGGFVR---R 133

Query: 122 NTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKT--EMYD 181
             +N V  FD+ T  W  +  M   R   A  ++DGKI V GG+  +     +   E+YD
Sbjct: 134 RRSNRVSIFDYRTYQWRRLPKMRQPRVYPAASVIDGKIYVIGGFRGSMPTDIENSGEVYD 193

Query: 182 TEKDVWIPL 184
            + + W P+
Sbjct: 194 PKTNTWEPI 198

[Close]

BLAST of Sed0012001 vs. ExPASy Swiss-Prot
Match: Q9M2B5 (Putative F-box/kelch-repeat protein At3g43710 OS=Arabidopsis thaliana OX=3702 GN=At3g43710 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-17
Identity = 68/227 (29.96%), Postives = 117/227 (51.54%), Query Frame = 0


Query: 5   IDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAICCYV 64
           I+ LPD + L+CLA VP   YP L LVS+ +++ L S EL++ R ++GS+E FL +C  +
Sbjct: 26  IEMLPDDLVLSCLARVPRMYYPILSLVSKRFRSFLTSTELYQTRNLLGSTESFLFVCLRI 85

Query: 65  --KSNIWQLYDPIHKLWITLPKVPYKISHLENF-----GVISTSQKMFVIGGHIKCFDNN 124
              SN  +L+  + +   +L KV   I   ++       V+     ++VIGG I   +NN
Sbjct: 86  VNDSNPLRLF-TLCRRPNSLTKVMVPILSPDSIPKFLPDVVLVGSNIYVIGGLI---NNN 145

Query: 125 TTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEMYDTEK 184
            +++V   D  + TW       V+R   + C++DGKI VAGG   N   T   E++DT+ 
Sbjct: 146 ASHKVMVMDCRSHTWREAQGTCVARVSPSACVLDGKIYVAGG-CKNLDATMWMEVFDTKT 205

Query: 185 DVW--IPLPDLHKIHH-RYCVGLMIEGKMHIKSYSLVQVFDSLEMKW 222
           + W  +  P          C  +  +G ++++S     +++  + +W
Sbjct: 206 ESWEFVSSPGEEICRDLTSCESIGYDGNVYVESMKTYGLYELHKGRW 247

[Close]

BLAST of Sed0012001 vs. ExPASy TrEMBL
Match: A0A6J1GPT2 (F-box/kelch-repeat protein SKIP30-like OS=Cucurbita moschata OX=3662 GN=LOC111456033 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.8e-92
Identity = 185/359 (51.53%), Postives = 232/359 (64.62%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  LI+GLPD +++ CLAFVPYY++PKLELVSRSWK  +RS ELFR R+ VGSSED L +
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCF------ 120
           C Y  +N WQLYDP+  LW+TLP++P KI+HL NFGV+STSQK+FV+GG           
Sbjct: 61  CSYDPNNTWQLYDPLQNLWMTLPELPSKITHLANFGVVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 --DNNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
             DN++TNEVWSFD +TRTWSM  PMLV R  FACC+VDGKIVVAGG+T+    T + EM
Sbjct: 121 REDNSSTNEVWSFDPVTRTWSMRAPMLVPRYTFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHIK--SYSLVQVFDSLEMKWIVKDNKCPS 240
           YD EKDVWIPLPDL   H   C+GLMI GKMH+     S VQVFDSLE+KW V+D     
Sbjct: 181 YDNEKDVWIPLPDLLHTHDSTCIGLMIGGKMHVMYGGVSTVQVFDSLELKWRVEDYGWLP 240

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRF-PGVAMNM 300
             KA+V  SLY                   +  ++ +   +D +AV+S  +F   + M +
Sbjct: 241 GHKAVVGGSLYT-----------------MSQGLVFKQEERDAQAVVSASQFVQRIGMAI 300

Query: 301 VGFRGELDMIGAMVNGRHKYDG--------FILNVEDEKPTWRRGIPMSPRCYGIVHAC 341
           VGFRGEL +IG +V    ++DG         +L V +EKP+W    PMS RC G V  C
Sbjct: 301 VGFRGELYVIGGVVR-PERFDGDLVKLSDVHVLKVRNEKPSWYCAAPMS-RCSGTVLGC 340

[Close]

BLAST of Sed0012001 vs. ExPASy TrEMBL
Match: A0A0A0K7B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387780 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 4.3e-91
Identity = 182/363 (50.14%), Postives = 230/363 (63.36%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  LI+GLPD ++L CLA++PYY++PKLELVSRSWK  +RSVELFR R+ VG SEDFL +
Sbjct: 1   MSGLIEGLPDAISLRCLAYIPYYLHPKLELVSRSWKAAIRSVELFRARQEVGFSEDFLCV 60

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCF------ 120
           C Y  +N WQLYDP+   W+TLP++P K  HL NF  +STSQK+FV+GG           
Sbjct: 61  CSYHPNNTWQLYDPLPNRWMTLPELPSKRMHLGNFCAVSTSQKLFVLGGRSDAVDPVTGD 120

Query: 121 --DNNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
             DN +TNEVWSFD ITRTWSM  PMLV RA+FACC+VDGKI+VAGG+T+    T K EM
Sbjct: 121 RDDNFSTNEVWSFDPITRTWSMRAPMLVPRAMFACCVVDGKIIVAGGFTSKSKSTSKAEM 180

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHI--KSYSLVQVFDSLEMKWIVKDNKCPS 240
           YD+EKDVW PLPDL + H   C+GL++ GKMHI     S VQV DS EMKW V+D     
Sbjct: 181 YDSEKDVWTPLPDLLQTHDSTCIGLVVRGKMHIVYNKVSTVQVLDSSEMKWRVEDYGWVL 240

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRF-PGVAMNM 300
             KA+V DSLYV N              P  G ++ +  G+  + +    +F   + M +
Sbjct: 241 GLKAVVGDSLYVMN--------------PLEG-VVFKQYGRTWKVIALATQFAQRIGMAV 300

Query: 301 VGFRGELDMIGAMVNGRHK-------YDGFILNVEDEKPTWRRGIPMSPRCYGIVHACME 346
           VGFRG+L  IG  ++            D  +LN+ DE+PTWR    MS RC G V  C E
Sbjct: 301 VGFRGDLYAIGGGIHPNRTGGDLTKLSDVHVLNLRDEEPTWRCAAQMS-RCQGTVLGCTE 347

[Close]

BLAST of Sed0012001 vs. ExPASy TrEMBL
Match: A0A6J1JW98 (F-box/kelch-repeat protein SKIP30-like OS=Cucurbita maxima OX=3661 GN=LOC111488452 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 1.2e-88
Identity = 180/364 (49.45%), Postives = 230/364 (63.19%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  LI+GLPD +++ CLAFVPYY++PKLELVSRSWK  +RS ELFR R+ VGSSED L +
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCFD----- 120
           C Y  +N W+LYDP+  LW+TLP++P KI HL NFGV+STSQK+FV+GG     D     
Sbjct: 61  CSYDPNNTWKLYDPLQNLWMTLPELPSKIKHLANFGVVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 ---NNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
               ++TNEVWSFD +TR WSM  PMLV R++FACC+VDGKIVVAGG+T+    T + EM
Sbjct: 121 REETSSTNEVWSFDPVTRMWSMRAPMLVPRSMFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHIK--SYSLVQVFDSLEMKWIVKDNKCPS 240
           YD EKDVWIPLPDL       C+GLMI GKMHI     S VQVFDSLE+KW V+      
Sbjct: 181 YDIEKDVWIPLPDLLHTRDSTCIGLMIGGKMHIMYGGVSTVQVFDSLELKWRVEYYGWLP 240

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRF-PGVAMNM 300
             KA+V  SLY                   +  ++ +   +  +AV+S  +F   + M M
Sbjct: 241 GHKAVVGGSLYT-----------------MSQGLVFKQEERGAQAVVSASQFVQRIGMAM 300

Query: 301 VGFRGELDMIGAMVNGRHKYDG--------FILNVEDEKPTWRRGIPMSPRCYGIVHACM 346
           VGFRGEL +IG +V    ++DG         +L V +EKP+W    P S RC G +  C 
Sbjct: 301 VGFRGELYVIGGIVR-PERFDGDLVKLSDVHVLKVRNEKPSWYCAAPTS-RCSGTILGCT 345

[Close]

BLAST of Sed0012001 vs. ExPASy TrEMBL
Match: A0A6J1D7Q9 (F-box/kelch-repeat protein SKIP30-like OS=Momordica charantia OX=3673 GN=LOC111018411 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.5e-88
Identity = 178/364 (48.90%), Postives = 228/364 (62.64%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  LI+GLPD +AL CLA VPYY++PKLELVSRSWK   RS ELFR R+ VGSSED L +
Sbjct: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCF------ 120
           C Y  +N WQLYDP+  LWITLP++P K  HL +FG  STSQ +FV+GG           
Sbjct: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120

Query: 121 --DNNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
             DN +TNEVWSFD +TR W M  PMLV RA+FACC+++GKI+VAGG+T+    T KTE+
Sbjct: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHI--KSYSLVQVFDSLEMKWIVKDNKCPS 240
           YD+EKD+W+PLPDL + H   C+G++I GK+HI  K  S VQ+FD+LE+KW V+D     
Sbjct: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLS--PRRFPGVAMN 300
              A VQDSLYV                     +I +  G+D + V+    +    + M 
Sbjct: 241 GPMAAVQDSLYV-----------------MCLGLIFKQDGRDRQVVIPAVSQFLHRIGMA 300

Query: 301 MVGFRGELDMIGAMVNGRH-------KYDGFILNVEDEKPTWRRGIPMSPRCYGIVHACM 346
           M+GFRGEL +IG +V             D  +LN+  EKPTW    PMS RC+G V  C 
Sbjct: 301 MIGFRGELYVIGGVVRPVRLDADLVKLSDVHVLNLRGEKPTWYCVAPMS-RCHGTVLGCT 346

[Close]

BLAST of Sed0012001 vs. ExPASy TrEMBL
Match: A0A5A7V6S8 (F-box/kelch-repeat protein SKIP30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001400 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 2.9e-87
Identity = 178/363 (49.04%), Postives = 226/363 (62.26%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  LI+GLPD ++L CLA++PYY++PKL LVSRSWK  +RSVELFR R+ VG SEDFL +
Sbjct: 1   MSGLIEGLPDAISLRCLAYIPYYLHPKLALVSRSWKAAIRSVELFRARQEVGFSEDFLCV 60

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCF------ 120
           C Y  +N WQLYDP+   W+TLP++P K  HL NF  +STSQK+FV+GG           
Sbjct: 61  CSYHPNNTWQLYDPLPNHWMTLPELPSKRMHLGNFCTVSTSQKLFVLGGRSIAVDPVTGD 120

Query: 121 --DNNTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
             DN +TNEVWSFD ITR WSM  PMLV RA+FACC+VDGKI+VAGG+T+    T K EM
Sbjct: 121 RDDNFSTNEVWSFDPITRMWSMRAPMLVPRAMFACCVVDGKIIVAGGFTSKSKSTSKAEM 180

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHI--KSYSLVQVFDSLEMKWIVKDNKCPS 240
           YD+EKDVW  LPDL + H   C G +I GKMHI     S VQV DSLEMKW V+D     
Sbjct: 181 YDSEKDVWTLLPDLLQTHDSTCNGWVIRGKMHIVYNGVSTVQVLDSLEMKWRVEDYSWLP 240

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRA-VLSPRRFPGVAMNM 300
             KA+V DSLYV               +  T  ++ +  G+  +  VL+ +    + M +
Sbjct: 241 GLKAVVGDSLYV---------------MSLTQGVVFKQYGRAWKVFVLATQFLQRIGMAV 300

Query: 301 VGFRGELDMIGAMVNGRHK-------YDGFILNVEDEKPTWRRGIPMSPRCYGIVHACME 346
           VGFRG+L  IG +++            D  +LN+ DE+PTW     MS RC G V  C E
Sbjct: 301 VGFRGDLYAIGGVIHPNRTGGDLTKLSDVHVLNLRDEEPTWHSAAQMS-RCQGTVLGCTE 347

[Close]

BLAST of Sed0012001 vs. TAIR 10
Match: AT3G63220.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 263.8 bits (673), Expect = 1.9e-70
Identity = 140/363 (38.57%), Postives = 203/363 (55.92%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  L+DG+P+ VAL CLA VP +++P LELVSRSW+  +RS ELFR R+ + SSE  L +
Sbjct: 1   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 60

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCFDNNT-- 120
           C +   NIWQ+Y P    W+TLP +P +I HL +FG ++T+  +FV+GG        T  
Sbjct: 61  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 120

Query: 121 ------TNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
                 T++VWS+DF+ R W+    MLV RA+FACC++ GKIVVAGG+TT R      EM
Sbjct: 121 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 180

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHI--KSYSLVQVFDSLEMKWIVKDNKCPS 240
           YD E DVW  +PDLH+ H+  C GL++ GK+H+  K  S VQV +S+++ W VKD   P 
Sbjct: 181 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 240

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRFP-GVAMNM 300
               +V+D LYV                  +  ++ +  G   + V S   F   + M M
Sbjct: 241 GPMVVVEDVLYV-----------------MSHGLVFKQEGDTWKMVASASEFKRRIGMAM 300

Query: 301 VGFRGELDMIGAMVNG-------RHKYDGFILNVEDEKPTWRRGIPMSPRCYGIVHACME 346
                E+ ++G ++         +   D   L V +++P WR   PM+ RC G +  C +
Sbjct: 301 TSLSDEVLIVGGVIGPDRLNWDIKPLSDVDALTVGNDRPAWRSVAPMT-RCRGTILGCTQ 345

[Close]

BLAST of Sed0012001 vs. TAIR 10
Match: AT3G63220.2 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 263.8 bits (673), Expect = 1.9e-70
Identity = 140/363 (38.57%), Postives = 203/363 (55.92%), Query Frame = 0


Query: 1   MPSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAI 60
           M  L+DG+P+ VAL CLA VP +++P LELVSRSW+  +RS ELFR R+ + SSE  L +
Sbjct: 8   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 67

Query: 61  CCYVKSNIWQLYDPIHKLWITLPKVPYKISHLENFGVISTSQKMFVIGGHIKCFDNNT-- 120
           C +   NIWQ+Y P    W+TLP +P +I HL +FG ++T+  +FV+GG        T  
Sbjct: 68  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 127

Query: 121 ------TNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEM 180
                 T++VWS+DF+ R W+    MLV RA+FACC++ GKIVVAGG+TT R      EM
Sbjct: 128 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 187

Query: 181 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHI--KSYSLVQVFDSLEMKWIVKDNKCPS 240
           YD E DVW  +PDLH+ H+  C GL++ GK+H+  K  S VQV +S+++ W VKD   P 
Sbjct: 188 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 247

Query: 241 VQKALVQDSLYVTNWIPETAHIRIKQWIPKTGHIIIEPGGQDMRAVLSPRRFP-GVAMNM 300
               +V+D LYV                  +  ++ +  G   + V S   F   + M M
Sbjct: 248 GPMVVVEDVLYV-----------------MSHGLVFKQEGDTWKMVASASEFKRRIGMAM 307

Query: 301 VGFRGELDMIGAMVNG-------RHKYDGFILNVEDEKPTWRRGIPMSPRCYGIVHACME 346
                E+ ++G ++         +   D   L V +++P WR   PM+ RC G +  C +
Sbjct: 308 TSLSDEVLIVGGVIGPDRLNWDIKPLSDVDALTVGNDRPAWRSVAPMT-RCRGTILGCTQ 352

[Close]

BLAST of Sed0012001 vs. TAIR 10
Match: AT1G16250.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-23
Identity = 99/382 (25.92%), Postives = 152/382 (39.79%), Query Frame = 0


Query: 3   SLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAICC 62
           S+I GLPD +AL C+A + +  +  LE VSR W+ ++R  +    +   G S  +L +  
Sbjct: 7   SIIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLT 66

Query: 63  YVKSNIWQLYDPIHKLWITLPKVPYKIS--HLENFGVISTSQKMFVIGG----HIKCFDN 122
               N W  YDP    W  LP+        H   F  +  S  + VIGG     +  F +
Sbjct: 67  ERSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGGCYAPSVSSFPH 126

Query: 123 N---TTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYT-TNRVYTYKTEM 182
                T +V  FD   + W MV  M   R  FAC  V GK+ VAGG   T+       E+
Sbjct: 127 QKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAEV 186

Query: 183 YDTEKDVWIPLPDLHKIHHRYCVGLMIEGKMHIKS-------YSLVQVFDSLEMKWIVKD 242
           YD   D W  LP + +     C GL   G  H+ S        +  +VF+  +M W   +
Sbjct: 187 YDPVADRWEELPAMPR-PQMDCSGLSYRGCFHVLSDQVGFAEQNSSEVFNPRDMTWSTVE 246

Query: 243 NKCPSVQ------KALVQDSLY-VTNW---IPETAHIRIKQWIPKTGHI--IIEPGGQDM 302
           +  P  +      + +  D +Y + +W   + +T      +W    G +  ++ P     
Sbjct: 247 DVWPFSRAMQFAVQVMKNDRVYTIVDWGESLIKTRDTDEGEWY-NVGSVPSVVLPN---- 306

Query: 303 RAVLSPRRFPGVAMNMVGFRGELDMIGAMV-----NGRHKYDGF------ILNVEDEKPT 345
                PR            R EL +IG  V     +G  ++D        + N  D    
Sbjct: 307 ----HPRELEAFGYGFAALRNELYVIGGKVLKWEESGAGRFDIVRLPVVRVCNPLDRPLN 366

[Close]

BLAST of Sed0012001 vs. TAIR 10
Match: AT5G60570.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-22
Identity = 71/250 (28.40%), Postives = 114/250 (45.60%), Query Frame = 0


Query: 3   SLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAICC 62
           S++ GL D VAL CLA+VP   YP L  V++ +  ++ S  LF  R+ +G  E  + + C
Sbjct: 48  SVLPGLIDDVALNCLAWVPRSDYPSLSCVNKKYNKLINSGHLFALRKELGIVEYLVFMVC 107

Query: 63  YVKSNIWQLYDPIHKLWITLPKVPYK--ISHLENFGVISTSQKMFVIGGHIKCFDNNTTN 122
             +   W ++ P+ K W+ LPK+P     +H +    ++   ++ V G  +  F      
Sbjct: 108 DPRG--WLMFSPMKKKWMVLPKMPCDECFNHADKES-LAVDDELLVFGRELFQF------ 167

Query: 123 EVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKTEMYDTEKDVW 182
            +W +   +R W     M   R LFA   + G  +VAGG   N       E+YD+    W
Sbjct: 168 AIWKYSLRSRCWVKCEGMHRPRCLFASGSLGGIAIVAGGTDMNGNILASAELYDSSSGRW 227

Query: 183 IPLPDLHKIHHRYCVGLMIEGKMHI--------KSYSLVQVFDSLEMKWIVKDNKCPSVQ 242
             LP++H    R C G  ++GK ++         S +  + FD    KW   +   P+V 
Sbjct: 228 EMLPNMHS-PRRLCSGFFMDGKFYVIGGMSSPNVSVTFGEEFDLETRKWRKIEGMYPNVN 287

[Close]

BLAST of Sed0012001 vs. TAIR 10
Match: AT5G03020.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 4.4e-19
Identity = 58/189 (30.69%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 2   PSLIDGLPDVVALTCLAFVPYYMYPKLELVSRSWKTVLRSVELFRERRVVGSSEDFLAIC 61
           P+    LPD VAL C A +  + YP L LVS+ ++T++ S EL   R  +G  E+ L +C
Sbjct: 14  PTSFSSLPDDVALDCRARISRFHYPTLSLVSKGFRTLIASPELEATRSFIGKPENHLCVC 73

Query: 62  CYVKSN---IWQLYDPIHKLWITLPKVPY--KISHLENFGVISTSQKMFVIGGHIKCFDN 121
             +  N   +W ++ PI K  +  P VP+     + +   V+S   ++++IGG ++    
Sbjct: 74  LRLYKNPNPLWFIFSPIPKQKLK-PIVPWFPNQQYPQYPTVVSNGSQIYIIGGFVR---R 133

Query: 122 NTTNEVWSFDFITRTWSMVTPMLVSRALFACCIVDGKIVVAGGYTTNRVYTYKT--EMYD 181
             +N V  FD+ T  W  +  M   R   A  ++DGKI V GG+  +     +   E+YD
Sbjct: 134 RRSNRVSIFDYRTYQWRRLPKMRQPRVYPAASVIDGKIYVIGGFRGSMPTDIENSGEVYD 193

Query: 182 TEKDVWIPL 184
            + + W P+
Sbjct: 194 PKTNTWEPI 198

The following BLAST results are available for this feature:

BLAST of Sed0012001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953500.1	3.6e-92	51.53	F-box/kelch-repeat protein SKIP30-like [Cucurbita moschata] >XP_022953501.1 F-bo...	[more]
KAG7014455.1	1.4e-91	51.96	F-box/kelch-repeat protein SKIP30 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6575922.1	1.4e-91	51.96	F-box/kelch-repeat protein SKIP30, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004146975.1	9.0e-91	50.14	F-box/kelch-repeat protein SKIP30 [Cucumis sativus] >KGN44794.1 hypothetical pro...	[more]
XP_023547905.1	1.5e-90	50.00	F-box/kelch-repeat protein SKIP30-like [Cucurbita pepo subsp. pepo] >XP_02354790...	[more]

BLAST of Sed0012001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1W7	2.6e-69	38.57	F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1...	[more]
Q0WW40	1.9e-22	25.92	F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana OX=3702 GN=At1g1625...	[more]
Q9FKJ0	4.6e-21	28.40	F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana OX=3702 GN=At5g6057...	[more]
Q9LYY3	6.2e-18	30.69	F-box/kelch-repeat protein At5g03020 OS=Arabidopsis thaliana OX=3702 GN=At5g0302...	[more]
Q9M2B5	1.1e-17	29.96	Putative F-box/kelch-repeat protein At3g43710 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Sed0012001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPT2	1.8e-92	51.53	F-box/kelch-repeat protein SKIP30-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A0A0K7B1	4.3e-91	50.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387780 PE=4 SV=1	[more]
A0A6J1JW98	1.2e-88	49.45	F-box/kelch-repeat protein SKIP30-like OS=Cucurbita maxima OX=3661 GN=LOC1114884...	[more]
A0A6J1D7Q9	1.5e-88	48.90	F-box/kelch-repeat protein SKIP30-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5A7V6S8	2.9e-87	49.04	F-box/kelch-repeat protein SKIP30-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Sed0012001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63220.1	1.9e-70	38.57	Galactose oxidase/kelch repeat superfamily protein	[more]
AT3G63220.2	1.9e-70	38.57	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G16250.1	1.3e-23	25.92	Galactose oxidase/kelch repeat superfamily protein	[more]
AT5G60570.1	3.2e-22	28.40	Galactose oxidase/kelch repeat superfamily protein	[more]
AT5G03020.1	4.4e-19	30.69	Galactose oxidase/kelch repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006652	Kelch repeat type 1	SMART	SM00612	kelc_smart	coord: 153..200 e-value: 4.1E-4 score: 29.7 coord: 103..152 e-value: 6.1E-8 score: 42.4
IPR006652	Kelch repeat type 1	PFAM	PF01344	Kelch_1	coord: 141..186 e-value: 3.8E-10 score: 39.2 coord: 94..138 e-value: 7.0E-8 score: 31.9
IPR015915	Kelch-type beta propeller	GENE3D	2.120.10.80		coord: 50..242 e-value: 1.5E-27 score: 98.3
IPR015915	Kelch-type beta propeller	SUPERFAMILY	117281	Kelch motif	coord: 66..320
None	No IPR available	PANTHER	PTHR24414	F-BOX/KELCH-REPEAT PROTEIN SKIP4	coord: 3..345
None	No IPR available	PANTHER	PTHR24414:SF40	F-BOX/KELCH-REPEAT PROTEIN SKIP30	coord: 3..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012001.1	Sed0012001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding