Sed0008411 (gene) Chayote v1

Overview
NameSed0008411
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUbiquitin-like protein ATG12
LocationLG06: 46158594 .. 46164875 (+)
RNA-Seq ExpressionSed0008411
SyntenySed0008411
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACGGAGTCGTCTAGTTCTGCACGAAAAGGTGAGCTTGTTTGACGATATATGAACAAACCCATCTTCAATTCGAGCTTATTCAGCCATATTTTGATGAATTGAACATTCAAACTTTATACAATCTTCAGGCTTGGTTGATCTGACACAAAAGGAGAATTTTTTTACAATTTCTGTTTGATCAGAATGTTTTCTTATTTTGATTTTGGATCAAGATTTATGTTGATTTATTTGGTTTTGTTTTTGTTAGTGGTTATTCTGCTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAGCCAAATTCAAGGTTTGTTATGCGTTAATTTTTGTCAGTTAATGGATTTTAAACCTTCTTCGTAAATTAGCCTTCTGGACTTGCTCTAAGGCTTATTTCTGAGCTTTCATTTGATGACATGAGCGCCAACCTTAGTCGCCCGCTGCCAATCCTCAGCTGGTGTCGCATAAATTCATCCGCCATTAATCAGTACATAACCATTAGCCAAAATGCCATTGAACTCAAACAAATTCACGCCCTTCTGATCAAATCAGCAGCCAAAGCCCACCTTCTCCGCCGTCTCTTCACCCGGATGCTTCAGTTTCCATGGGACAACTCGTTCTACGCGCACCACCTGTTTGATGAAATACCTGACAGCAAAGATCAGTTCACTTGGTCCTCTCTCATTCGCTATTATTTTCACCATTACCATTTTGGCCAATCCTTATCCTTGTATGCTAAGATGCATCAGGCAGGCGTTATGGAATCGGAGTTTACATTCTCTTCAGTGCTCTCGGCATGCGCTCGTATGCCAGCAGTGTCGGAAGGAAGGCAAGTTCATGCTAGGGTCATGCAGTTGGGTTTCTTGGGTAATAAGATTGTGCAAACTTCGCTGATGGATATGTATGCTAAATGTGGATTCATAATGGATGCTAGGAGTGTGTTTATTTTGATTTATGATAAGGACATTGTTGCTTGTACTTGTATGATTCGAGGATATACTAAGCTGGGGATGATGGAAGATGCCCACGAGTTGTTTGATAAAATGGGGCAGCGGAATTCGTTTTCTTGGGCAACCATGGTGGCGGGGTATGCCAACCGCGGGGACATGAAAGCGGCAAAGCAGTTGTATGATGCAATGCCAGAGAGAAATCCAGTCTCGTGGCTCACTATGATAGCAGGTTATGGGAGGTATGGTGATGTGGTAGGGGCCGAAAGGATCTTCAGTGAAATATCGAGAGCAGATGCATCGTGTTGTGCAGCAATGGTGGCTTGTTATTCTCAAAATGGGTATGCAAAAGAGGCCATTGAATTGTATAAGAAAATGAAAGAAGAAGATATGGAAACCAATGAGGTAGCAATTGTTGGAGCAATATCGGCTTGTGTTAAACTACAGGATGTTGAGATGGCGAGCAAATTAATAAACCAAGTTGAAGAAGGGTGTTGTGGTAAGTTCATTAGACTATATTCAGGGTCAAAGGCATCTAACATGTTGATTAAAAATCTTTGAAGATCATCACTTAGAATACAATATTATAATCCGATCACTTAGGGTGTTTTTGGGGCAACGGATGAGTTATTATAAATGATGGATAATCATAAAAAGATGTTATCATAATAGGAGAGGTTATAATAACCTGCATTTGAGGCTCATGCTATTATAACAGAGATTATTATAACCTGTGTTTTGGGTATGGGTTATTATAGTAGCGAGTTGTATTATAGTGGGGTTTTTTTATAATCGAAAATCAAAGATTCACTCCTCTGCATACTCAGGAGCACTTGCACCTCCCAAAGTCCAAACCCAAGAGACGATAAGAGATTTTACAACTAAGCTTACTTGTAAGTTTCGAACCTGGGATAGGACATCCAAAGGAGCATACCTTGAAGCCTCAAGGCTCTACCAACAAGGTCGCATCTTGGGGACATTATATCAGAGTTATTATAGTAACATAGTTGGATGGTAATTATAGTTGGAATGAGTGCTTATGGGCTAACTCACCGGTTATTATAACCCAATCTTACCCACCCTTAAATGGAGACACAAACGCCCTTTTTAAGTTTAACTAATATGATAGAATGTAGAATATTTAAAACCTAGAAGTCAATAGAGGCTCTAATCTAAAATGTAGATGCTAACGTTTTGTTGCAGATAGAAATCTCTTCGTGTCGAATGCACTGATCCACCTACATTCAAAATTTGGCAATATAGAAAAGGCACAAGAAGAATTCCACAAAATGAAGGATAGAGATGTAGTAACTTACAGTACGTTGATCACATGCCTTGCTGACCATGGAAAAGGCCATGAAGCCTTGAATCTCTTCTCCAAGATGCAAGAAGAAGGTATAAAGCCAAACCAAGTTTGTTTCACTGGTGTACTAAATGCATGTGGCCATGCAGGGATGATTGAACAAGGATGCAAGAATTTTGAGCTTATGAACAAGGTTTTCGGCATTGAGCCGCTAAAGGAGCATTATGCGTGCATGGTTGATCTCCTAGGAAGAGTTGGTGAGGTTGAAATGGCATACAGTCTGATTAAAGATAAGGTAAGGGAAGTTGATGCTAAAACATGGGGGTCATTGCTTGGAGCTTGCAAGATCCATGGTAATGTGGAGTTGGGGGAGATTGCTGCAAGGCATCTATTTGAAATGGAGCCTGAGAATTCAGGAAATTATGTGCTTTTGGCAAATACATATGCTCAGAGAAAGGAGTGGGATGGAGCAGAGAGGGTTAGGAACATGATGGTTGAAAGAGGAATCAGAAAATCTCCCGCGTATAGTTGGATTTCAATATCTACCTGAATGGTCGAGGTATGTAAGTTAGTCTGGACACTCACGAATATCTCATATCAAGAATCAAGATTTTACATTCTTATGGAGAAGCTTCACTGGCAGATATAGAAGAGGAGGACACGGGTATAGACCCAACTTACTATTGCCTATTCTTTTTCATGGTTAGCAGAACATGGATTGCTTGTTTTACCTATGGCGTCATCCAACAAGACCTTGCCGCATGAAAACTAAAACCAAATGGATAAGGGCGCTACAAAATATTTATAACTCAATCCAATACAACACAAATTCAGAGTCTGTACATGAAGATCGGGGTCAAGTTCAATGAATATGTCTCCATTTGTATCTTATTGGGAAGATTAGAACAATTTCTTCTGCGTTACAGATTATTTTTTAAACAAGAGTATTATCCTACACAGTTTTGGAAAGTCACACAACCACCCAACTTTGCAAACCTTGAATTGATATCACCCATCGATGGCCCATCCTATCATCACTACTTGGAACACAGGGATAAGGGAATAACTTTAAAAGCTTTTTTGGCACTTTTTTGGGCTATCACTAAAACCAATTCTTTTAGACAGAATTGAATATTGGGTTATGTTCTTTTAGGTCTTTCTTGGACGGCCCTTTATTGTTTTTAAGGTTAAAATACCATTTTGGTCCCTCAACTTTGGGATTTGTTCCATTTTGGTCCCTAGACTTTCAAATGTTCATTTTTAGTCCCTTGACTTTGTAGTTTGTTCAATTTTGGTCCCTTGACTTTTCTGTTTGTCCAATTTTGGTCCCTCGACTTTCAAATGTCCAAATTTAGTCCCTACACTATCAAAAAATGTCAAAAATGGTCCTTTGGTCAAATAATTTTTTTTTTCACTCCTAAATTATTTTCTCTCTCTTCCATCTTTCATCATTTCTCCTTCTAAAAGTTTCATCTCTTTTAAATCCACCTCTCTAATCCTTTTCTCTTCTTTTTTTCTCATATTCTCTCCTCAATCCATCTCATCAAATTATTTAACATGAGATAATTTTTCTAAATAATAATTTTCTTACTTTGATTTGTCACTTTTTATTTTCTAAAATTCATAGTCTACCATGGAACAAAAAAGAAAAAGAAAGAAAATAAAGACGAAAAAAAGAAAAGAAAAGAGGGGAAGAGAGGTAAAATTTCTAGAGAGAGAAATTATGAAAGATGAAAGAGAGAAAATAATTTAGGAGTGATAAAAAATTCATTTGACCAAAGGACAATTTTTGAACTTTTTTTATAGTCTAAGGACCAAATTTTAAAACATTTAAAAATTGAGGGACCAAAATTAGACAAATAGCAAAGTTGAGGGACCAAAATTGGACATTTGAAAGTTGAGGGACCAAAATTGGACAAACAACAAAGTTGAGGGACTAAAATTGGACATTTGAAAGTTGAGAGACCAAAATGGAACAAACCCCAAAATCGAGGGACCAAAATGATATTTTAACCTTGTTTTTATCTTATTATGCCTCAGTATGAGAGTTTCCATAGTTAATATCTCCTATTCTTGCCATTTCAGTTTTTTTCTTTTAGTTTTGTTCTTCTAGTTTTTATAGGTCTTTGTAACACTTGCATCTATCTATGGAATGTTTTGTTTCCTATCCCAAAAAAAAAAAGATTTCTTTTGAACTAATATGGTGTTCTTAGATTATTTTTATGCAGAACATCAACATTTGCCAAGTCAGTATTAGCAGACAAAAATGTATTTAGAATTGGTGTATGGGCGGGCATGTTTGGCAGTGATGTTTTCATGTCCAGGATCATTTTACTTTTGCAACTAACTTATTCAAAATCAAATGCTAATATGATTATATGAAAAAACACTTCCAAAAGGAATGAAGCTTAATCTCTGTTCTCACATATGTATTAGATCTCATGGATGCAATACCACATCCTTGTACTGTATAAAATTCACATTGCCATCACTATATGGTTTGGACTGGATTAGCACAAACTTTATTGATTATGACAACTTGAGGGAACTTTCATAAGATAACTGATGAAATAAATTATATGATTAATGGGTGTTTTTTCTGAAAAAGAGTTGTGCTGTTATATAAAATCTGGAATAAACTTTTGAAATGAACGGTCTTAGAATGTGTAATTTGTGCAAGAAAATTTACAACAGCTCTTCTAAAGTTTCTCTTTTTTGGAACTTTTTTTAACTCTTTTTTGGTACTTGATTTACCGTATTTGTAAATTTTTGGTCATTGACATATTGCATACACTTGGCAGATGTCTGGAACTGACAAATTTATTAAAGTTATTGATTACATACGCCGGTCAATTCAACGAGAAACCTTGGTATTCATCTGAGTTCTTGAAATAGTCTCTCTTTTGTCTGCCAATTCATTTTTAACTAACGACACTTCACTATGCTAATTGTTTATATTCTTTGAAGTTTGTCTTTGTCAATAGTGCATTCTCGCCAGGTCCAGATGAGACAGTTATTGATCTATACAATGTGAGTTGATATTAACTTATTGCTTGTATTTATGTTCAAGTTGCATTTGTATACTGTTTACATTAAATTTTTAGGAGAAGAAAAGGAGGTGGTGGGGAATTTATTTTCAGAAGAATTAGTTGGACAATGGAAATATCTTTAAAAGGCTCTATTGGGTAGTCAAAAGTTGTCATCTTCTTCATTGAAAGTGTTGTGTAGACTTCTGATGTTGTTGTTGGTCATGAATCATTCTTGAAATCACCTATCATCGGATATTCTTAGTAGGTGAATGAAAAAGACTCCAGCAATCTAGATTTGAAAACTTTCTGAAGCATGGATAAAATTGTCATCTTCTTCATTGAAAGTGTAGTGTAGACTTCTGATGTTGTTGTTGGCTGATATACACAAGTTTTGTTAGATTTTCTTAAATGAAGCATCAGATGAGTACCCTTCAATGTTTTAGACATCAGTTTTTTTATCACCTTTCTCTGAGGGTTGTGTATGGATAAAATCGATCAGACTTCATTGCAGTTTTTCAATCTGTTTAGCTTATTACCTAAGAATAAATATATGGTTTTTCATATCCACACGAGTTTAAAGTTTTCTCAAGTCCTGGTAGCTGATACGATCCCGAGATCATTGAAAGTTTATTCAAGGCGGACCAAGAAGTGACGGATCTATTTTATTATTATTTTTAAATATAATTCTGTTTTAGCTATTTAAGTTGTATTGGGCTTTTGGGCCTTATTAGGGCTATTTACTAAATTAGGTTAAATCCTATGATTACTATAAATAGGATATGATAGGTCACTAGGACATTCATTCAGTTATCATCTTTGTACTCTGGCTCTTTGAGAGATTCTCTCGAGAGATTTATCGTAGTTAATAAAATAGTGTGGTAGTTTCTATCAATAGCTAGGTATCTTGTTGATTATATTTTTCCTGTTCCTACTTGCAGAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA

mRNA sequence

ATGGCTTCAACGGAGTCGTCTAGTTCTGCACGAAAAGTGGTTATTCTGCTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAGCCAAATTCAAGATGTCTGGAACTGACAAATTTATTAAAGTTATTGATTACATACGCCGGTCAATTCAACGAGAAACCTTGTTTGTCTTTGTCAATAGTGCATTCTCGCCAGGTCCAGATGAGACAGTTATTGATCTATACAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA

Coding sequence (CDS)

ATGGCTTCAACGGAGTCGTCTAGTTCTGCACGAAAAGTGGTTATTCTGCTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAGCCAAATTCAAGATGTCTGGAACTGACAAATTTATTAAAGTTATTGATTACATACGCCGGTCAATTCAACGAGAAACCTTGTTTGTCTTTGTCAATAGTGCATTCTCGCCAGGTCCAGATGAGACAGTTATTGATCTATACAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA

Protein sequence

MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Homology
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BLAST of Sed0008411 vs. NCBI nr
Match: XP_038878493.1 (ubiquitin-like protein ATG12 [Benincasa hispida])

HSP 1 Score: 184.1 bits (466), Expect = 5.6e-43
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          MASTESSSSARKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVN
Sbjct: 1  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. NCBI nr
Match: XP_004151012.1 (ubiquitin-like protein ATG12 [Cucumis sativus] >KGN59786.1 hypothetical protein Csa_001664 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          M STESSSSARKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. NCBI nr
Match: XP_008464001.1 (PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 3.6e-42
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          M STESS+SARKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVN
Sbjct: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. NCBI nr
Match: XP_022955552.1 (ubiquitin-like protein ATG12 [Cucurbita moschata] >XP_023526053.1 ubiquitin-like protein ATG12 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6581816.1 Ubiquitin-like protein ATG12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018264.1 Ubiquitin-like protein ATG12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          MAS ESSSSA+KVV+LLR+ GDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVN
Sbjct: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. NCBI nr
Match: XP_022153405.1 (ubiquitin-like protein ATG12 [Momordica charantia] >XP_022153406.1 ubiquitin-like protein ATG12 [Momordica charantia])

HSP 1 Score: 174.9 bits (442), Expect = 3.4e-40
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          MAS ESSSS RKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVN
Sbjct: 1  MASKESSSSDRKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. ExPASy Swiss-Prot
Match: Q1SF86 (Ubiquitin-like protein ATG12 OS=Medicago truncatula OX=3880 GN=ATG12 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.6e-38
Identity = 74/95 (77.89%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          MA+ ES +S RKVV+ LRATGDAPILKQ+KFK++GTDKF KVID++RR + RE+LFV+VN
Sbjct: 1  MAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. ExPASy Swiss-Prot
Match: Q8S924 (Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana OX=3702 GN=ATG12A PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 7.6e-35
Identity = 72/95 (75.79%), Postives = 83/95 (87.37%), Query Frame = 0 

Query: 3  STESS--SSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 62
          +TESS  SS RKVV+ LRATG APILKQ+KFK+ GTDKF KVID++RR +  ++LFV+VN
Sbjct: 2  ATESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVN 61

Query: 63 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 SAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]
BLAST of Sed0008411 vs. ExPASy Swiss-Prot
Match: Q9LVK3 (Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana OX=3702 GN=ATG12B PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.2e-34
Identity = 67/93 (72.04%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 3  STESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSA 62
          +TES +S +K+V+ LRATG APILKQ+KFK+SG+DKF  VID++RR +  ++LFV+VNSA
Sbjct: 2  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of Sed0008411 vs. ExPASy Swiss-Prot
Match: A2YAG8 (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica OX=39946 GN=ATG12 PE=3 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 9.6e-30
Identity = 57/89 (64.04%), Postives = 77/89 (86.52%), Query Frame = 0 

Query: 7  SSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPG 66
          ++  +KVV+  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I ++T+F++VNSAFSP 
Sbjct: 5  AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPN 64

Query: 67 PDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          PDE +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 65 PDELIIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]
BLAST of Sed0008411 vs. ExPASy Swiss-Prot
Match: Q69NP0 (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica OX=39947 GN=ATG12 PE=3 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 9.6e-30
Identity = 57/89 (64.04%), Postives = 77/89 (86.52%), Query Frame = 0 

Query: 7  SSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPG 66
          ++  +KVV+  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I ++T+F++VNSAFSP 
Sbjct: 5  AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPN 64

Query: 67 PDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          PDE +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 65 PDELIIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]
BLAST of Sed0008411 vs. ExPASy TrEMBL
Match: A0A0A0LIA6 (Ubiquitin-like protein ATG12 OS=Cucumis sativus OX=3659 GN=Csa_3G846020 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.9e-43
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          M STESSSSARKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. ExPASy TrEMBL
Match: A0A1S3CKI1 (Ubiquitin-like protein ATG12 OS=Cucumis melo OX=3656 GN=LOC103501992 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          M STESS+SARKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVN
Sbjct: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. ExPASy TrEMBL
Match: A0A6J1GTZ1 (Ubiquitin-like protein ATG12 OS=Cucurbita moschata OX=3662 GN=LOC111457534 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.6e-41
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          MAS ESSSSA+KVV+LLR+ GDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVN
Sbjct: 1  MASMESSSSAKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. ExPASy TrEMBL
Match: A0A6J1DGR5 (Ubiquitin-like protein ATG12 OS=Momordica charantia OX=3673 GN=LOC111020917 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          MAS ESSSS RKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVN
Sbjct: 1  MASKESSSSDRKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVNDLYDNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. ExPASy TrEMBL
Match: A0A6J1J054 (Ubiquitin-like protein ATG12 OS=Cucurbita maxima OX=3661 GN=LOC111480033 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.8e-40
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 60
          MAS ESS+S++KVV+LLR+ GDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVN
Sbjct: 1  MASMESSNSSKKVVVLLRSIGDAPILKQNKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Sed0008411 vs. TAIR 10
Match: AT1G54210.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 147.5 bits (371), Expect = 5.4e-36
Identity = 72/95 (75.79%), Postives = 83/95 (87.37%), Query Frame = 0 

Query: 3  STESS--SSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 62
          +TESS  SS RKVV+ LRATG APILKQ+KFK+ GTDKF KVID++RR +  ++LFV+VN
Sbjct: 2  ATESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVN 61

Query: 63 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 SAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]
BLAST of Sed0008411 vs. TAIR 10
Match: AT3G13970.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 146.0 bits (367), Expect = 1.6e-35
Identity = 67/93 (72.04%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 3  STESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSA 62
          +TES +S +K+V+ LRATG APILKQ+KFK+SG+DKF  VID++RR +  ++LFV+VNSA
Sbjct: 2  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of Sed0008411 vs. TAIR 10
Match: AT1G54210.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 5.1e-10
Identity = 42/95 (44.21%), Postives = 45/95 (47.37%), Query Frame = 0 

Query: 3  STESS--SSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVN 62
          +TESS  SS RKVV+ LRATG APILKQ+KFK                            
Sbjct: 2  ATESSSPSSVRKVVVHLRATGGAPILKQSKFK---------------------------- 52

Query: 63 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
                          NFG DGKLVVNYACSMAWG
Sbjct: 62 ----------------NFGFDGKLVVNYACSMAWG 52

The following BLAST results are available for this feature:
BLAST of Sed0008411 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038878493.15.6e-4395.79ubiquitin-like protein ATG12 [Benincasa hispida][more]
XP_004151012.11.6e-4294.74ubiquitin-like protein ATG12 [Cucumis sativus] >KGN59786.1 hypothetical protein ... [more]
XP_008464001.13.6e-4293.68PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo][more]
XP_022955552.11.2e-4091.58ubiquitin-like protein ATG12 [Cucurbita moschata] >XP_023526053.1 ubiquitin-like... [more]
XP_022153405.13.4e-4091.58ubiquitin-like protein ATG12 [Momordica charantia] >XP_022153406.1 ubiquitin-lik... [more]
BLAST of Sed0008411 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1SF869.6e-3877.89Ubiquitin-like protein ATG12 OS=Medicago truncatula OX=3880 GN=ATG12 PE=3 SV=1[more]
Q8S9247.6e-3575.79Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana OX=3702 GN=ATG12A PE=1 SV=... [more]
Q9LVK32.2e-3472.04Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana OX=3702 GN=ATG12B PE=1 SV=... [more]
A2YAG89.6e-3064.04Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica OX=39946 GN=ATG12 PE=... [more]
Q69NP09.6e-3064.04Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica OX=39947 GN=ATG12 P... [more]
BLAST of Sed0008411 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIA67.9e-4394.74Ubiquitin-like protein ATG12 OS=Cucumis sativus OX=3659 GN=Csa_3G846020 PE=3 SV=... [more]
A0A1S3CKI11.8e-4293.68Ubiquitin-like protein ATG12 OS=Cucumis melo OX=3656 GN=LOC103501992 PE=3 SV=1[more]
A0A6J1GTZ15.6e-4191.58Ubiquitin-like protein ATG12 OS=Cucurbita moschata OX=3662 GN=LOC111457534 PE=3 ... [more]
A0A6J1DGR51.6e-4091.58Ubiquitin-like protein ATG12 OS=Momordica charantia OX=3673 GN=LOC111020917 PE=3... [more]
A0A6J1J0542.8e-4089.47Ubiquitin-like protein ATG12 OS=Cucurbita maxima OX=3661 GN=LOC111480033 PE=3 SV... [more]
BLAST of Sed0008411 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G54210.15.4e-3675.79Ubiquitin-like superfamily protein [more]
AT3G13970.11.6e-3572.04Ubiquitin-like superfamily protein [more]
AT1G54210.25.1e-1044.21Ubiquitin-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007242Ubiquitin-like protein Atg12PFAMPF04110APG12coord: 12..95
e-value: 3.4E-30
score: 104.3
IPR007242Ubiquitin-like protein Atg12PANTHERPTHR13385AUTOPHAGY PROTEIN 12coord: 3..95
NoneNo IPR availableGENE3D3.10.20.90coord: 6..95
e-value: 1.8E-35
score: 123.4
NoneNo IPR availablePANTHERPTHR13385:SF2UBIQUITIN-LIKE PROTEIN ATG12Bcoord: 3..95
NoneNo IPR availableCDDcd01612Ubl_ATG12coord: 12..94
e-value: 2.8849E-42
score: 131.1
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 11..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0008411.1Sed0008411.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000045 autophagosome assembly
biological_process GO:0000422 autophagy of mitochondrion
biological_process GO:0044804 autophagy of nucleus
biological_process GO:0006501 C-terminal protein lipidation
cellular_component GO:0034274 Atg12-Atg5-Atg16 complex
cellular_component GO:0034045 phagophore assembly site membrane
cellular_component GO:0005737 cytoplasm