Sed0007821 (gene) Chayote v1

Overview


Name	Sed0007821
Type	gene
Organism	Sechium edule (Chayote v1)
Description	S-adenosylmethionine decarboxylase leader
Location	LG11: 4560890 .. 4561158 (-)
RNA-Seq Expression	Sed0007821
Synteny	Sed0007821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAAACGGCGGTAAGAAGAAGTGTAGCAGTAGTAATAGCAGTAGTAAACGGCAACAATTCGAAGCTCCTCTTGGCTACATCATCGAAGACGTTCGTCCTCTCGGTGGAATCGAGAAGTTCCGATCTGCTGCTTACTCAAATGTAAGTTTGTTGTTCTTCGATTTCTTGTTCGTGTTCTTGAGCGATTCGTTGAATTCTCGCGTTGTAATTGCGATTTGTTTTTCGATTTTCTGTTTTCGCAGTGCGTGAGGAATCCATCTTGA

mRNA sequence

ATGGAGGAAAACGGCGGTAAGAAGAAGTGTAGCAGTAGTAATAGCAGTAGTAAACGGCAACAATTCGAAGCTCCTCTTGGCTACATCATCGAAGACGTTCGTCCTCTCGGTGGAATCGAGAAGTTCCGATCTGCTGCTTACTCAAATTGCGTGAGGAATCCATCTTGA

Coding sequence (CDS)

ATGGAGGAAAACGGCGGTAAGAAGAAGTGTAGCAGTAGTAATAGCAGTAGTAAACGGCAACAATTCGAAGCTCCTCTTGGCTACATCATCGAAGACGTTCGTCCTCTCGGTGGAATCGAGAAGTTCCGATCTGCTGCTTACTCAAATTGCGTGAGGAATCCATCTTGA

Protein sequence

MEENGGKKKCSSSNSSSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS

Homology

[Close]

BLAST of Sed0007821 vs. NCBI nr
Match: TYJ96391.1 (S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MEENGGKKKCSSSNS-SSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK +SS+S SSKRQQ+EAPLGYIIEDVRP GGIEKFRSAAYSNCVR PS
Sbjct: 20 METKGGKKKSNSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCVRKPS 75

[Close]

BLAST of Sed0007821 vs. NCBI nr
Match: XP_008452459.1 (PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MEENGGKKKCSSSNS-SSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK +SS+S SSKRQQ+EAPLGYIIEDVRP GGIEKFRSAAYSNCVR PS
Sbjct: 1  METKGGKKKSNSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCVRKPS 56

[Close]

BLAST of Sed0007821 vs. NCBI nr
Match: XP_038890197.1 (S-adenosylmethionine decarboxylase proenzyme-like [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1   MEENGGKKKCSSSNS-SSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
           M+  GGKKK SSS+S SSKRQQ+EAPLGYIIEDVRP GGIEKFRSAAYSNCVR PS
Sbjct: 116 MKTEGGKKKSSSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCVRKPS 171

[Close]

BLAST of Sed0007821 vs. NCBI nr
Match: KAG7030075.1 (hypothetical protein SDJN02_08422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MEENGGKKKCSSS--NSSSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK SSS  + SSKRQQ+EAPLGYIIEDVRP GGI+KFRSAAYSNC+R PS
Sbjct: 19 MEAKGGKKKSSSSSCSKSSKRQQYEAPLGYIIEDVRPHGGIQKFRSAAYSNCMRKPS 75

[Close]

BLAST of Sed0007821 vs. NCBI nr
Match: KAG6599133.1 (hypothetical protein SDJN03_08911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MEENGGKKKCSSS--NSSSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK SSS  + SSKRQQ+EAPLGYIIEDVRP GGI+KFRSAAYSNC+R PS
Sbjct: 35 MEAKGGKKKSSSSSCSKSSKRQQYEAPLGYIIEDVRPHGGIQKFRSAAYSNCMRKPS 91

[Close]

BLAST of Sed0007821 vs. ExPASy TrEMBL
Match: A0A5D3BCP3 (S-adenosylmethionine decarboxylase proenzyme-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00170 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MEENGGKKKCSSSNS-SSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK +SS+S SSKRQQ+EAPLGYIIEDVRP GGIEKFRSAAYSNCVR PS
Sbjct: 20 METKGGKKKSNSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCVRKPS 75

[Close]

BLAST of Sed0007821 vs. ExPASy TrEMBL
Match: A0A1S3BUN9 (Adenosylmethionine decarboxylase OS=Cucumis melo OX=3656 GN=LOC103493485 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MEENGGKKKCSSSNS-SSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK +SS+S SSKRQQ+EAPLGYIIEDVRP GGIEKFRSAAYSNCVR PS
Sbjct: 1  METKGGKKKSNSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCVRKPS 56

[Close]

BLAST of Sed0007821 vs. ExPASy TrEMBL
Match: A0A0A0LM83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036690 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MEENGGKKKCSSSNS--SSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK +SS+S  SSKRQQ+EAPLGYIIEDVRP GGIEKFRSAAYSNCVR PS
Sbjct: 1  METKGGKKKSNSSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNCVRKPS 57

[Close]

BLAST of Sed0007821 vs. ExPASy TrEMBL
Match: A0A5D2KPJ0 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G009200v1 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  MEENGGKKKCSSSNSSSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK SSS+SSS   Q+EAPLGY IED+RP GGIEKFRSAAYSNCVR PS
Sbjct: 1  METKGGKKKSSSSSSSSSSLQYEAPLGYSIEDIRPNGGIEKFRSAAYSNCVRKPS 55

[Close]

BLAST of Sed0007821 vs. ExPASy TrEMBL
Match: A0A2P5FNI3 (S-adenosyl-l-methionine decarboxylase leader peptide OS=Trema orientale OX=63057 GN=TorRG33x02_048430 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.6e-14
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1  MEENGGKKKCSSSNSSSKR-QQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK SSSNSS+   QQ+E PLGY IED+RP GGIEKFRSAAYSNCVR PS
Sbjct: 1  METKGGKKKSSSSNSSNNNSQQYEVPLGYSIEDIRPNGGIEKFRSAAYSNCVRKPS 56

[Close]

BLAST of Sed0007821 vs. TAIR 10
Match: AT3G02468.1 (conserved peptide upstream open reading frame 9 )

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1  MEENGGKKKCSSSNSSSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK SSS+S      +EAPLGY IEDVRP GGI+KF+S+ YSNC + PS
Sbjct: 2  MESKGGKKKSSSSSSLF----YEAPLGYSIEDVRPNGGIKKFKSSVYSNCSKRPS 52

[Close]

BLAST of Sed0007821 vs. TAIR 10
Match: AT3G25572.1 (conserved peptide upstream open reading frame 11 )

HSP 1 Score: 66.2 bits (160), Expect = 9.1e-12
Identity = 39/56 (69.64%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1  MEENGGKKKCSSSNSSSKRQQ-FEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME  GGKKK  SSNSSS+    FEAPL Y IEDVRP GGI+KFRSAAYSN    PS
Sbjct: 1  METKGGKKK--SSNSSSRDSLFFEAPLRYSIEDVRPNGGIKKFRSAAYSNITGKPS 54

[Close]

BLAST of Sed0007821 vs. TAIR 10
Match: AT5G15948.1 (conserved peptide upstream open reading frame 10 )

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-11
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1  MEENGGKKKCSSSNSSSKRQQFEAPLGYIIEDVRPLGGIEKFRSAAYSNCVRNPS 56
          ME   G KK SSSNSS     +EAPLGY IEDVRP GGI+KF+S+ YSNC + PS
Sbjct: 1  MESKAGNKK-SSSNSS---LCYEAPLGYSIEDVRPFGGIKKFKSSVYSNCAKRPS 51

The following BLAST results are available for this feature:

BLAST of Sed0007821 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96391.1	2.2e-15	83.93	S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo var. makuwa]	[more]
XP_008452459.1	2.2e-15	83.93	PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo]	[more]
XP_038890197.1	2.8e-15	83.93	S-adenosylmethionine decarboxylase proenzyme-like [Benincasa hispida]	[more]
KAG7030075.1	1.8e-14	78.95	hypothetical protein SDJN02_08422, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599133.1	1.8e-14	78.95	hypothetical protein SDJN03_08911, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0007821 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCP3	1.1e-15	83.93	S-adenosylmethionine decarboxylase proenzyme-like OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BUN9	1.1e-15	83.93	Adenosylmethionine decarboxylase OS=Cucumis melo OX=3656 GN=LOC103493485 PE=3 SV...	[more]
A0A0A0LM83	1.4e-15	82.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036690 PE=4 SV=1	[more]
A0A5D2KPJ0	1.5e-14	78.18	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G009200v1 P...	[more]
A0A2P5FNI3	7.6e-14	76.79	S-adenosyl-l-methionine decarboxylase leader peptide OS=Trema orientale OX=63057...	[more]

BLAST of Sed0007821 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02468.1	1.4e-12	63.64	conserved peptide upstream open reading frame 9	[more]
AT3G25572.1	9.1e-12	69.64	conserved peptide upstream open reading frame 11	[more]
AT5G15948.1	1.6e-11	63.64	conserved peptide upstream open reading frame 10	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide	PFAM	PF08132	AdoMetDC_leader	coord: 1..55 e-value: 3.7E-28 score: 97.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR35727:SF2	SUBFAMILY NOT NAMED	coord: 1..55
None	No IPR available	PANTHER	PTHR35727	BNAA05G33520D PROTEIN	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007821.1	Sed0007821.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006557	S-adenosylmethioninamine biosynthetic process
biological_process	GO:0008295	spermidine biosynthetic process
biological_process	GO:0006597	spermine biosynthetic process
molecular_function	GO:0004014	adenosylmethionine decarboxylase activity