Sed0007286 (gene) Chayote v1

Overview


Name	Sed0007286
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Cyclin-dependent kinase
Location	LG13: 2780023 .. 2780563 (+)
RNA-Seq Expression	Sed0007286
Synteny	Sed0007286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACACTTGGCCGCAAACAGAGTCCGAAGCCATTTGAATCTCACACATCCTTCAACGCATTTCTTCATCTTCCCCTTTTTGAAACCCTAATTTCCACAAAATTCCTGTTCTGAATCTTCCATTTCGAGATTTTCAGCAGCTTCAATGGCGAATCAGCTTGGAAATTTGGTGGAATCCATAAAATCAAAGGTTAATAAGGCGCTGAGGAAGTCGAAGAAGAAGCCATATGTGAAGATGGACAAAAGCTCGAGCGTTCGAGTCGAGATCCGTAGCCGAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGAAAACGTACGATTACTTAATATCGTTGCGATCTGTAATCAGGTTCTTAAATCTCTCGCTATTCATCTTCGTAATCTTTGCGTAGTTGCGATTGCTGAATGTTCTGGTTTGTGAAATTGTGATTTATTTTGTTTTAGTTTGATTCTGTAGCTATTACCGATTCTGTGTTTCTCTTATAGATTTCGGATATGGAACCGTTTCGGATTCAATAGCGC

mRNA sequence

AAAACACTTGGCCGCAAACAGAGTCCGAAGCCATTTGAATCTCACACATCCTTCAACGCATTTCTTCATCTTCCCCTTTTTGAAACCCTAATTTCCACAAAATTCCTGTTCTGAATCTTCCATTTCGAGATTTTCAGCAGCTTCAATGGCGAATCAGCTTGGAAATTTGGTGGAATCCATAAAATCAAAGGTTAATAAGGCGCTGAGGAAGTCGAAGAAGAAGCCATATGTGAAGATGGACAAAAGCTCGAGCGTTCGAGTCGAGATCCGTAGCCGAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGAAAACGTACGATTACTTAATATCGTTGCGATCTGTAATCAGGTTCTTAAATCTCTCGCTATTCATCTTCGTAATCTTTGCGTAGTTGCGATTGCTGAATGTTCTGGTTTGTGAAATTGTGATTTATTTTGTTTTAGTTTGATTCTGTAGCTATTACCGATTCTGTGTTTCTCTTATAGATTTCGGATATGGAACCGTTTCGGATTCAATAGCGC

Coding sequence (CDS)

ATGGCGAATCAGCTTGGAAATTTGGTGGAATCCATAAAATCAAAGGTTAATAAGGCGCTGAGGAAGTCGAAGAAGAAGCCATATGTGAAGATGGACAAAAGCTCGAGCGTTCGAGTCGAGATCCGTAGCCGAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGAAAACGTACGATTACTTAA

Protein sequence

MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRPGKRTIT

Homology

[Close]

BLAST of Sed0007286 vs. NCBI nr
Match: XP_022149139.1 (uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncharacterized protein LOC111017632 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 8.7e-19
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRP 60
          MANQLGNLVESIKSKV KAL+KS KKPYVKMDKSSSV+VEIRSRKARLLIDKTLKVADRP
Sbjct: 1  MANQLGNLVESIKSKV-KALKKS-KKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADRP 60

Query: 61 GKRTIT 67
          GKRTI+
Sbjct: 61 GKRTIS 64

[Close]

BLAST of Sed0007286 vs. NCBI nr
Match: XP_008454414.1 (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0044321.1 uncharacterized protein E6C27_scaffold46G00430 [Cucumis melo var. makuwa] >TYK29449.1 uncharacterized protein E5676_scaffold655G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRP 60
          MANQLGNLVESIKSKV KAL+KS KKPY+KMDKSSSV+VEIRSRKARLLIDKTLKVADRP
Sbjct: 1  MANQLGNLVESIKSKV-KALKKS-KKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRP 60

Query: 61 GKRTIT 67
          GKRTI+
Sbjct: 61 GKRTIS 64

[Close]

BLAST of Sed0007286 vs. NCBI nr
Match: XP_038905309.1 (uncharacterized protein LOC120091380 [Benincasa hispida])

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRP 60
          MANQLGNLVESIKSKV KAL+KS KKPY+KMDKSSSV+VEIRSRKARLLIDKT+KVADRP
Sbjct: 1  MANQLGNLVESIKSKV-KALKKS-KKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRP 60

Query: 61 GKRTIT 67
          GKRTI+
Sbjct: 61 GKRTIS 64

[Close]

BLAST of Sed0007286 vs. NCBI nr
Match: XP_004150261.1 (uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hypothetical protein Csa_014765 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 5.6e-18
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRP 60
          MANQLGNLVESIKSKV KAL+KS KKPY+KMDKSSSV+VEIRSRKAR LIDKT+KVADRP
Sbjct: 1  MANQLGNLVESIKSKV-KALKKS-KKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRP 60

Query: 61 GKRTIT 67
          GKRTI+
Sbjct: 61 GKRTIS 64

[Close]

BLAST of Sed0007286 vs. NCBI nr
Match: XP_023530681.1 (uncharacterized protein LOC111793132 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.5 bits (249), Expect = 5.6e-18
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSK--KKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVAD 60
          MANQLGNLVESIKSKV KALRKSK  KKPY+KMDKS+SV++EIRSRKARLLIDKTLKVAD
Sbjct: 5  MANQLGNLVESIKSKV-KALRKSKKSKKPYIKMDKSASVKIEIRSRKARLLIDKTLKVAD 64

Query: 61 RPGKRTI 66
          RPG RT+
Sbjct: 65 RPGDRTV 70

[Close]

BLAST of Sed0007286 vs. ExPASy TrEMBL
Match: A0A6J1D650 (uncharacterized protein LOC111017632 OS=Momordica charantia OX=3673 GN=LOC111017632 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.2e-19
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRP 60
          MANQLGNLVESIKSKV KAL+KS KKPYVKMDKSSSV+VEIRSRKARLLIDKTLKVADRP
Sbjct: 1  MANQLGNLVESIKSKV-KALKKS-KKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADRP 60

Query: 61 GKRTIT 67
          GKRTI+
Sbjct: 61 GKRTIS 64

[Close]

BLAST of Sed0007286 vs. ExPASy TrEMBL
Match: A0A5D3E160 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00420 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.5e-19
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRP 60
          MANQLGNLVESIKSKV KAL+KS KKPY+KMDKSSSV+VEIRSRKARLLIDKTLKVADRP
Sbjct: 1  MANQLGNLVESIKSKV-KALKKS-KKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRP 60

Query: 61 GKRTIT 67
          GKRTI+
Sbjct: 61 GKRTIS 64

[Close]

BLAST of Sed0007286 vs. ExPASy TrEMBL
Match: E5GBH1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.5e-19
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRP 60
          MANQLGNLVESIKSKV KAL+KS KKPY+KMDKSSSV+VEIRSRKARLLIDKTLKVADRP
Sbjct: 1  MANQLGNLVESIKSKV-KALKKS-KKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRP 60

Query: 61 GKRTIT 67
          GKRTI+
Sbjct: 61 GKRTIS 64

[Close]

BLAST of Sed0007286 vs. ExPASy TrEMBL
Match: A0A1S3BZS5 (uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.5e-19
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRP 60
          MANQLGNLVESIKSKV KAL+KS KKPY+KMDKSSSV+VEIRSRKARLLIDKTLKVADRP
Sbjct: 1  MANQLGNLVESIKSKV-KALKKS-KKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRP 60

Query: 61 GKRTIT 67
          GKRTI+
Sbjct: 61 GKRTIS 64

[Close]

BLAST of Sed0007286 vs. ExPASy TrEMBL
Match: A0A0A0KT27 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-18
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRP 60
          MANQLGNLVESIKSKV KAL+KS KKPY+KMDKSSSV+VEIRSRKAR LIDKT+KVADRP
Sbjct: 1  MANQLGNLVESIKSKV-KALKKS-KKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRP 60

Query: 61 GKRTIT 67
          GKRTI+
Sbjct: 61 GKRTIS 64

[Close]

BLAST of Sed0007286 vs. TAIR 10
Match: AT3G19660.1 (unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVNKALRKSKKKPYVKMDKSSSVRVEIRSRKARLLIDKTLKVADRP 60
          M  QL +L+E+IKSKV  +L + KKK Y+KMDKSSSVRV IR +K R LIDKTLKVADRP
Sbjct: 1  MGLQLESLMETIKSKV--SLLRKKKKTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRP 60

Query: 61 GKRTI 66
          GKRT+
Sbjct: 61 GKRTL 63

The following BLAST results are available for this feature:

BLAST of Sed0007286 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149139.1	8.7e-19	92.42	uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncha...	[more]
XP_008454414.1	1.1e-18	90.91	PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypot...	[more]
XP_038905309.1	1.9e-18	89.39	uncharacterized protein LOC120091380 [Benincasa hispida]	[more]
XP_004150261.1	5.6e-18	87.88	uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hypothetical ...	[more]
XP_023530681.1	5.6e-18	86.57	uncharacterized protein LOC111793132 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0007286 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0007286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D650	4.2e-19	92.42	uncharacterized protein LOC111017632 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5D3E160	5.5e-19	90.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GBH1	5.5e-19	90.91	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BZS5	5.5e-19	90.91	uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=...	[more]
A0A0A0KT27	2.7e-18	87.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1	[more]

BLAST of Sed0007286 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19660.1	1.1e-14	69.23	unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563:SF6	BNACNNG33880D PROTEIN	coord: 1..64
None	No IPR available	PANTHER	PTHR34563	BNACNNG33880D PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0007286.1	Sed0007286.1	mRNA