Sed0004979 (gene) Chayote v1

Overview


Name	Sed0004979
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ty3/gypsy retrotransposon protein
Location	LG01: 10540705 .. 10541778 (+)
RNA-Seq Expression	Sed0004979
Synteny	Sed0004979

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTCTTCTTCCAGATCCATCTGAAATGAAAACGAAGTCGAAATATGTTAGACTTAAAATTCGTAAATTTCGTAAGGATCCAACAATGGAGAAGGACATCACGGCTCTGGAGGAATCCACTGAAACACTGCTCAAGAAACTGCAAGAAAACAAACACACCACCGAAGAAGAAGCCAAACCCACCGGCGAACAAGCCGCCATACCCGGCCGGATGCTGGAGTTTCCCCTCTTCGACGGAACCGACTCGCCCACCTGGATCTTGAAAATGGAACGCCTCTTCCAATATCACGCCATGGACGACTTTGCCAGGACGATCGACATCATCGCACTCTGTATGTCCGGCCAAGCCCTACCCTGGTTCCGATCCCTCCAAAATCGGAACCATCTGCCCAAATCATGGGGGGAGTTCCGGCGTGCTCTGTTTGAGCGATTTGAAGGCGGCGACACCATGTATGAGAGGTTCACTGCGTTGCAGCAAGATGGGACCGTGAGGGAGTATTGCAGCCAGTTCGAGCTCTACGGGTCGCTCCTTCCAGACATTCCTGACTCCATCCTTGAGGCTAAGTTTATGAACGGCTTAGACGCTCTGATTCGAGCCGAGGTTCGGGTGTTTCGGCCCAAAGACATACTGGAAATTATGGAAACGGCTAGGTTGGTGGAAGATAAGAACGCTGCGGCGATGAACCCCGCCGTCGGGGGTACATCGTGGACAACCATGAAGCTTAGAGCCACGATCAACGGTAGGGCTGTGGTTGTTAAGGTCGACAGTGGGGCAACCGATAATTTCATATCTCGAAAGTTGGCTATGGAATTGAAGCTCCCAGTGGACAACTGCGGCACCGGCAATTTTGTTTTCGGTTCCGGGGAAACGATCTTTCGTGGTGTTCCGCTGAAAATCCATGATACAACCTTTTCCGTGGACTGTTCTCCGGTTAAAATAGAAGGGAATTTTGAGGTTATATTGGGAAAGTCGTGGCTGCGTCCCATGCAAGTTGATTGGAAAGCTCGAACAATGAAGATGGATTTGGGGGAAAGGACTGTAACATTTCAGGGAGACCCATCTCTCTGA

mRNA sequence

ATGAAGGGTCTTCTTCCAGATCCATCTGAAATGAAAACGAAGTCGAAATATGTTAGACTTAAAATTCGTAAATTTCGTAAGGATCCAACAATGGAGAAGGACATCACGGCTCTGGAGGAATCCACTGAAACACTGCTCAAGAAACTGCAAGAAAACAAACACACCACCGAAGAAGAAGCCAAACCCACCGGCGAACAAGCCGCCATACCCGGCCGGATGCTGGAGTTTCCCCTCTTCGACGGAACCGACTCGCCCACCTGGATCTTGAAAATGGAACGCCTCTTCCAATATCACGCCATGGACGACTTTGCCAGGACGATCGACATCATCGCACTCTGTATGTCCGGCCAAGCCCTACCCTGGTTCCGATCCCTCCAAAATCGGAACCATCTGCCCAAATCATGGGGGGAGTTCCGGCGTGCTCTGTTTGAGCGATTTGAAGGCGGCGACACCATGTATGAGAGGTTCACTGCGTTGCAGCAAGATGGGACCGTGAGGGAGTATTGCAGCCAGTTCGAGCTCTACGGGTCGCTCCTTCCAGACATTCCTGACTCCATCCTTGAGGCTAAGTTTATGAACGGCTTAGACGCTCTGATTCGAGCCGAGGTTCGGGTGTTTCGGCCCAAAGACATACTGGAAATTATGGAAACGGCTAGGTTGGTGGAAGATAAGAACGCTGCGGCGATGAACCCCGCCGTCGGGGGTACATCGTGGACAACCATGAAGCTTAGAGCCACGATCAACGGTAGGGCTGTGGTTGTTAAGGTCGACAGTGGGGCAACCGATAATTTCATATCTCGAAAGTTGGCTATGGAATTGAAGCTCCCAGTGGACAACTGCGGCACCGGCAATTTTGTTTTCGGTTCCGGGGAAACGATCTTTCGTGGTGTTCCGCTGAAAATCCATGATACAACCTTTTCCGTGGACTGTTCTCCGGTTAAAATAGAAGGGAATTTTGAGGTTATATTGGGAAAGTCGTGGCTGCGTCCCATGCAAGTTGATTGGAAAGCTCGAACAATGAAGATGGATTTGGGGGAAAGGACTGTAACATTTCAGGGAGACCCATCTCTCTGA

Coding sequence (CDS)

ATGAAGGGTCTTCTTCCAGATCCATCTGAAATGAAAACGAAGTCGAAATATGTTAGACTTAAAATTCGTAAATTTCGTAAGGATCCAACAATGGAGAAGGACATCACGGCTCTGGAGGAATCCACTGAAACACTGCTCAAGAAACTGCAAGAAAACAAACACACCACCGAAGAAGAAGCCAAACCCACCGGCGAACAAGCCGCCATACCCGGCCGGATGCTGGAGTTTCCCCTCTTCGACGGAACCGACTCGCCCACCTGGATCTTGAAAATGGAACGCCTCTTCCAATATCACGCCATGGACGACTTTGCCAGGACGATCGACATCATCGCACTCTGTATGTCCGGCCAAGCCCTACCCTGGTTCCGATCCCTCCAAAATCGGAACCATCTGCCCAAATCATGGGGGGAGTTCCGGCGTGCTCTGTTTGAGCGATTTGAAGGCGGCGACACCATGTATGAGAGGTTCACTGCGTTGCAGCAAGATGGGACCGTGAGGGAGTATTGCAGCCAGTTCGAGCTCTACGGGTCGCTCCTTCCAGACATTCCTGACTCCATCCTTGAGGCTAAGTTTATGAACGGCTTAGACGCTCTGATTCGAGCCGAGGTTCGGGTGTTTCGGCCCAAAGACATACTGGAAATTATGGAAACGGCTAGGTTGGTGGAAGATAAGAACGCTGCGGCGATGAACCCCGCCGTCGGGGGTACATCGTGGACAACCATGAAGCTTAGAGCCACGATCAACGGTAGGGCTGTGGTTGTTAAGGTCGACAGTGGGGCAACCGATAATTTCATATCTCGAAAGTTGGCTATGGAATTGAAGCTCCCAGTGGACAACTGCGGCACCGGCAATTTTGTTTTCGGTTCCGGGGAAACGATCTTTCGTGGTGTTCCGCTGAAAATCCATGATACAACCTTTTCCGTGGACTGTTCTCCGGTTAAAATAGAAGGGAATTTTGAGGTTATATTGGGAAAGTCGTGGCTGCGTCCCATGCAAGTTGATTGGAAAGCTCGAACAATGAAGATGGATTTGGGGGAAAGGACTGTAACATTTCAGGGAGACCCATCTCTCTGA

Protein sequence

MKGLLPDPSEMKTKSKYVRLKIRKFRKDPTMEKDITALEESTETLLKKLQENKHTTEEEAKPTGEQAAIPGRMLEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDIIALCMSGQALPWFRSLQNRNHLPKSWGEFRRALFERFEGGDTMYERFTALQQDGTVREYCSQFELYGSLLPDIPDSILEAKFMNGLDALIRAEVRVFRPKDILEIMETARLVEDKNAAAMNPAVGGTSWTTMKLRATINGRAVVVKVDSGATDNFISRKLAMELKLPVDNCGTGNFVFGSGETIFRGVPLKIHDTTFSVDCSPVKIEGNFEVILGKSWLRPMQVDWKARTMKMDLGERTVTFQGDPSL

Homology

[Close]

BLAST of Sed0004979 vs. NCBI nr
Match: KAE8652678.1 (hypothetical protein Csa_013756 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 2.5e-67
Identity = 142/292 (48.63%), Postives = 189/292 (64.73%), Query Frame = 0


Query: 74  LEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDIIALCMSGQALPWFRSLQNRNHLPK 133
           LE P+FDGTD+  WILKMER F+ H +DD A+ ++ I LCMSGQAL WFR  QN  + P+
Sbjct: 60  LELPMFDGTDTLMWILKMERYFEVHHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPE 119

Query: 134 SWGEFRRALFERFEGGDTMYERFTALQQDGTVREYCSQFELYGSLLPDIPDSILEAKFMN 193
           SWGEFR +L++RF  G  +  RF  LQQ+G+V EYCS+FE  G+LLP++   ++EAKFMN
Sbjct: 120 SWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMN 179

Query: 194 GLDALIRAEVRVFRPKDILEIMETARLVEDKNAAAMNPAVGGTSWTTMKLRATINGRAVV 253
           GL   IR EVR+   + IL+IM  ARL E KN  A N         + K + T+  R+VV
Sbjct: 180 GLKTEIRGEVRMLDTEGILDIMHRARLAEIKNNVAFN---------STKRKGTVKERSVV 239

Query: 254 VKVDSGATDNFISRKLAMELKLPVDNCGTGNFVFGSGET-----IFRGVPLKIHDTTFSV 313
           VKV S    N IS+ LA +LKL +D  G  + V GSG+T     I RGV L+I + T++ 
Sbjct: 240 VKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAE 299

Query: 314 DCSPVKIEGNFEVILGKSW---LRPMQVDWKARTMKMDLGERTVTFQGDPSL 358
           D  P+++  + EVILG  W   L  M+VDWK  TMK+++G+  VT + DPSL
Sbjct: 300 DFFPLQMGEDDEVILGNLWLVDLGKMEVDWKNLTMKLEVGKEIVTLRKDPSL 342

[Close]

BLAST of Sed0004979 vs. NCBI nr
Match: KAA0056890.1 (aminoacyl-tRNA ligase [Cucumis melo var. makuwa] >TYJ99393.1 aminoacyl-tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 6.7e-65
Identity = 153/352 (43.47%), Postives = 204/352 (57.95%), Query Frame = 0


Query: 31  MEKDITALEESTETLLKKLQENKHTTEEEAKPT----------GEQAAIP-----GRM-- 90
           ME  + AL+   + +  +   N  TT +    T          G Q  +P      RM  
Sbjct: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN 60

Query: 91  LEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDIIALCMSGQALPWFRSLQNRNHLPK 150
           LE P+FDGTD+  WILKMER F+ H +DD AR +D I LCMSGQAL WFR  QN    P+
Sbjct: 61  LELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPE 120

Query: 151 SWGEFRRALFERFEGGDTMYERFTALQQDGTVREYCSQFELYGSLLPDIPDSILEAKFMN 210
           SW EFR +L+ RF     +  +F  L+Q+G+V EYCS+FE  G+LLP++   +LEAKFMN
Sbjct: 121 SWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMN 180

Query: 211 GLDALIRAEVRVFRPKDILEIMETARLVEDKNAAAMNPAVGGTSWTTMKLRATINGRAVV 270
           GL   IR +VR+  PKDIL+IM  ARL E KN  A+N         + K + T+  R+V+
Sbjct: 181 GLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALN---------STKRKGTVKERSVI 240

Query: 271 VKVDSGATDNFISRKLAMELKLPVDNCGTGNFVFGS-----GETIFRGVPLKIHDTTFSV 330
           VKV S    N IS+ LA +LKL +D  G  + V GS     G+ I RGV L+I + T+  
Sbjct: 241 VKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVE 300

Query: 331 DCSPVKIEGNFEVILGKSW---LRPMQVDWKARTMKMDLGERTVTFQGDPSL 358
           D  P+++  + EVILG  W   L  M+VDWK   MK+ +G+ TVT + DP L
Sbjct: 301 DFFPLQMGEDDEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL 343

[Close]

BLAST of Sed0004979 vs. NCBI nr
Match: XP_016900762.1 (PREDICTED: uncharacterized protein LOC107991016 [Cucumis melo])

HSP 1 Score: 244.2 bits (622), Expect = 1.7e-60
Identity = 146/337 (43.32%), Postives = 194/337 (57.57%), Query Frame = 0


Query: 31  MEKDITALEESTETLLKKLQENKHTTEEEAKPT----------GEQAAIP-----GRM-- 90
           ME  + AL+   + +  +   N  TT +    T          G Q  +P      RM  
Sbjct: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN 60

Query: 91  LEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDIIALCMSGQALPWFRSLQNRNHLPK 150
           LE P+FDGTD+  WILKMER F+ H +DD AR +D I LCMSGQAL WFR  QN    P+
Sbjct: 61  LELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPE 120

Query: 151 SWGEFRRALFERFEGGDTMYERFTALQQDGTVREYCSQFELYGSLLPDIPDSILEAKFMN 210
           SW EFR +L+ RF     +  +F  L+Q+G+V EYCS+FE  G+LLP++   +LEAKFMN
Sbjct: 121 SWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMN 180

Query: 211 GLDALIRAEVRVFRPKDILEIMETARLVEDKNAAAMNPAVGGTSWTTMKLRATINGRAVV 270
           GL   IR +VR+  PKDIL+IM  ARL E KN  A+N         + K + T+  R+V+
Sbjct: 181 GLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALN---------STKRKGTVKERSVI 240

Query: 271 VKVDSGATDNFISRKLAMELKLPVDNCGTGNFVFGS-----GETIFRGVPLKIHDTTFSV 330
           VKV S    N IS+ LA +LKL +D  G  + V GS     G+ I RGV L+I + T+  
Sbjct: 241 VKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVE 300

Query: 331 DCSPVKIEGNFEVILGKSW---LRPMQVDWKARTMKM 343
           D  P+++  + EVILG  W   L  M+VDWK   MK+
Sbjct: 301 DFFPLQMGEDDEVILGNLWLVALGKMEVDWKNLPMKL 328

[Close]

BLAST of Sed0004979 vs. NCBI nr
Match: KAF7812804.1 (Retrotransposable element Tf2 [Senna tora])

HSP 1 Score: 167.9 bits (424), Expect = 1.6e-37
Identity = 121/418 (28.95%), Postives = 204/418 (48.80%), Query Frame = 0


Query: 9   SEMKTKSKYVRLKIRKFRKDPTMEKD-ITALEESTETLLKKL------------------ 68
           + M+++ + V  +IR FR+D T  K+ +  ++++ E L +K+                  
Sbjct: 4   TRMESRVENVEKEIRMFREDLTQVKEAMMIMKDTLERLERKVDKGGEHELSEGSGAHGDG 63

Query: 69  QENKHTTE-----EEAKPTGEQAAIPGRMLEFPLFDGTDSPTWILKMERLFQYHAMDDFA 128
           ++ K + E     +E +   +  +   R LE PLFDG D+  W+ ++ER F  + M D  
Sbjct: 64  EKEKDSDEVNDKAKEKESVNDDDSNKYRKLELPLFDGDDAVGWLFRVERYFSINRMKDED 123

Query: 129 RTIDIIALCMSGQALPWFRSLQNRNHLPKSWGEFRRALFERFEGGD--TMYERFTALQQD 188
           + ++ +A+C+ G+AL W + ++ R  + ++W +F+  L  RF        YE   AL+Q 
Sbjct: 124 K-LEAVAVCLEGRALNWLQWIETRVEM-RTWPKFKTELLRRFHQSQLGNGYEMLMALKQT 183

Query: 189 GTVREYCSQFELYGSLLPDIPDSILEAKFMNGLDALIRAEVRVFRPKDILEIMETARLVE 248
           G+  EY  +FEL  + L D P+ +L + F+NGL   +RAE+R+ R +++LE+++ A  VE
Sbjct: 184 GSAAEYREKFELLSAPLKDAPEDMLISVFLNGLKEDVRAELRMSRAQNLLEVLDLAHKVE 243

Query: 249 DKN---------------------AAAMNP------------AVGGTSWTTMKLRATING 308
           D+N                         NP            + G T   TMKL   I G
Sbjct: 244 DRNMVLAKLKEDQEKANRASRVFPGPKWNPIKPSFSKPFSIASEGITGGRTMKLLGKIQG 303

Query: 309 RAVVVKVDSGATDNFISRKLAMELKLPVDN-------CGTGNFVFGSGETIFRGVPLKIH 358
           + V++ +DSGA+ NFIS  L  +L LP +N        G G+ V G G  I RG+ +++ 
Sbjct: 304 KRVLIMIDSGASHNFISSSLVAQLSLPKENTSVYEVTVGDGHVVKGQG--ICRGLKVEMQ 363

[Close]

BLAST of Sed0004979 vs. NCBI nr
Match: TYK06549.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-37
Identity = 110/359 (30.64%), Postives = 169/359 (47.08%), Query Frame = 0


Query: 51  ENKHTTEEEAKPTGEQAAIPGRMLEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDII 110
           E K  TEE A    +      + +E P+F G D  +W+ + ER FQ H + D  + + + 
Sbjct: 109 EGKTETEEAAADRNK-----FKKVEMPVFAGEDPDSWLFRAERYFQIHKLSDSEKML-VS 168

Query: 111 ALCMSGQALPWFRSLQNRNHLPKSWGEFRRALFERFEGG--DTMYERFTALQQDGTVREY 170
            +   G AL W+RS + R     SW   +  L  RF     + + ERF  ++Q+ TV +Y
Sbjct: 169 TISFDGPALNWYRSQEEREKF-TSWANLKERLLVRFRSSRDEKVLERFLRVKQESTVDDY 228

Query: 171 CSQFELYGSLLPDIPDSILEAKFMNGLDALIRAEVRVFRPKDILEIMETARLVE----DK 230
            + F+   + L D+PD +++  FMNGL   IRAEVR+ RPK + E+ME A+LVE    ++
Sbjct: 229 RNLFDKLVAPLSDVPDPVVKDTFMNGLFPWIRAEVRICRPKGLAEMMEFAQLVENREIER 288

Query: 231 NAAAMNPAVGG--------------------------------------TSWTTMKLRAT 290
           N   +N   GG                                          TMK++  
Sbjct: 289 NEVNLNNFAGGKYSQQNTVNNRTPANTNSDSKTNTNFPMRTITLRSSNNAEICTMKVKGK 348

Query: 291 INGRAVVVKVDSGATDNFISRKLAMELKLPVDNCGTGNFVFGS-----GETIFRGVPLKI 350
           I  R V++ +D GAT NFIS KL   L+LPV   G    + GS     G+ I   V +++
Sbjct: 349 IQEREVIILIDYGATHNFISEKLVESLQLPVKETGHYGVILGSGTVVQGKGICENVEIQL 408

Query: 351 HDTTFSVDCSPVKIEGNFEVILGKSWLRPM---QVDWKARTMKMDLGERTVTFQGDPSL 358
            +     +  P+++ G  +V+LG  WL  +    VDWK  T+      + ++ +GDPSL
Sbjct: 409 SNWKVKEEFLPLEL-GGVDVVLGMQWLHSLGITVVDWKNLTLTFSSEGKQISIKGDPSL 459

[Close]

BLAST of Sed0004979 vs. ExPASy TrEMBL
Match: A0A5D3BJD9 (Aminoacyl-tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006110 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.2e-65
Identity = 153/352 (43.47%), Postives = 204/352 (57.95%), Query Frame = 0


Query: 31  MEKDITALEESTETLLKKLQENKHTTEEEAKPT----------GEQAAIP-----GRM-- 90
           ME  + AL+   + +  +   N  TT +    T          G Q  +P      RM  
Sbjct: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN 60

Query: 91  LEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDIIALCMSGQALPWFRSLQNRNHLPK 150
           LE P+FDGTD+  WILKMER F+ H +DD AR +D I LCMSGQAL WFR  QN    P+
Sbjct: 61  LELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPE 120

Query: 151 SWGEFRRALFERFEGGDTMYERFTALQQDGTVREYCSQFELYGSLLPDIPDSILEAKFMN 210
           SW EFR +L+ RF     +  +F  L+Q+G+V EYCS+FE  G+LLP++   +LEAKFMN
Sbjct: 121 SWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMN 180

Query: 211 GLDALIRAEVRVFRPKDILEIMETARLVEDKNAAAMNPAVGGTSWTTMKLRATINGRAVV 270
           GL   IR +VR+  PKDIL+IM  ARL E KN  A+N         + K + T+  R+V+
Sbjct: 181 GLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALN---------STKRKGTVKERSVI 240

Query: 271 VKVDSGATDNFISRKLAMELKLPVDNCGTGNFVFGS-----GETIFRGVPLKIHDTTFSV 330
           VKV S    N IS+ LA +LKL +D  G  + V GS     G+ I RGV L+I + T+  
Sbjct: 241 VKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVE 300

Query: 331 DCSPVKIEGNFEVILGKSW---LRPMQVDWKARTMKMDLGERTVTFQGDPSL 358
           D  P+++  + EVILG  W   L  M+VDWK   MK+ +G+ TVT + DP L
Sbjct: 301 DFFPLQMGEDDEVILGNLWLVALGKMEVDWKNLPMKLKVGKETVTLRKDPFL 343

[Close]

BLAST of Sed0004979 vs. ExPASy TrEMBL
Match: A0A1S4DXQ7 (uncharacterized protein LOC107991016 OS=Cucumis melo OX=3656 GN=LOC107991016 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.3e-61
Identity = 146/337 (43.32%), Postives = 194/337 (57.57%), Query Frame = 0


Query: 31  MEKDITALEESTETLLKKLQENKHTTEEEAKPT----------GEQAAIP-----GRM-- 90
           ME  + AL+   + +  +   N  TT +    T          G Q  +P      RM  
Sbjct: 1   MENPVEALDAKLKKVEDEEVHNIPTTHDNNLTTLMHQMALLLNGHQQCLPQYAPTHRMPN 60

Query: 91  LEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDIIALCMSGQALPWFRSLQNRNHLPK 150
           LE P+FDGTD+  WILKMER F+ H +DD AR +D I LCMSGQAL WFR  QN    P+
Sbjct: 61  LELPMFDGTDTLMWILKMERYFEVHHIDDIARMMDTILLCMSGQALAWFRCFQNWGKPPE 120

Query: 151 SWGEFRRALFERFEGGDTMYERFTALQQDGTVREYCSQFELYGSLLPDIPDSILEAKFMN 210
           SW EFR +L+ RF     +  +F  L+Q+G+V EYCS+FE  G+LLP++   +LEAKFMN
Sbjct: 121 SWDEFRDSLYMRFGDARNVCSKFLGLEQEGSVEEYCSKFETLGALLPELQHVVLEAKFMN 180

Query: 211 GLDALIRAEVRVFRPKDILEIMETARLVEDKNAAAMNPAVGGTSWTTMKLRATINGRAVV 270
           GL   IR +VR+  PKDIL+IM  ARL E KN  A+N         + K + T+  R+V+
Sbjct: 181 GLKTEIREDVRMLHPKDILDIMHRARLGEKKNNVALN---------STKRKGTVKERSVI 240

Query: 271 VKVDSGATDNFISRKLAMELKLPVDNCGTGNFVFGS-----GETIFRGVPLKIHDTTFSV 330
           VKV S    N IS+ LA +LKL +D  G  + V GS     G+ I RGV L+I + T+  
Sbjct: 241 VKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKKVKGDGICRGVLLQIGNDTYVE 300

Query: 331 DCSPVKIEGNFEVILGKSW---LRPMQVDWKARTMKM 343
           D  P+++  + EVILG  W   L  M+VDWK   MK+
Sbjct: 301 DFFPLQMGEDDEVILGNLWLVALGKMEVDWKNLPMKL 328

[Close]

BLAST of Sed0004979 vs. ExPASy TrEMBL
Match: A0A0A0LUB3 (Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064860 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-42
Identity = 87/157 (55.41%), Postives = 111/157 (70.70%), Query Frame = 0


Query: 74  LEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDIIALCMSGQALPWFRSLQNRNHLPK 133
           LE P+FDGTD+  WILKMER F+ H +DD A+ ++ I LCMSGQAL WFR  QN  + P+
Sbjct: 60  LELPMFDGTDTLMWILKMERYFEVHHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPE 119

Query: 134 SWGEFRRALFERFEGGDTMYERFTALQQDGTVREYCSQFELYGSLLPDIPDSILEAKFMN 193
           SWGEFR +L++RF  G  +  RF  LQQ+G+V EYCS+FE  G+LLP++   ++EAKFMN
Sbjct: 120 SWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMN 179

Query: 194 GLDALIRAEVRVFRPKDILEIMETARLVEDKNAAAMN 231
           GL   IR EVR+   + IL+IM  ARL E KN  A N
Sbjct: 180 GLKTEIRGEVRMLDTEGILDIMHRARLAEIKNNVAFN 216

[Close]

BLAST of Sed0004979 vs. ExPASy TrEMBL
Match: A0A5D3C860 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00050 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 9.8e-38
Identity = 110/359 (30.64%), Postives = 169/359 (47.08%), Query Frame = 0


Query: 51  ENKHTTEEEAKPTGEQAAIPGRMLEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDII 110
           E K  TEE A    +      + +E P+F G D  +W+ + ER FQ H + D  + + + 
Sbjct: 109 EGKTETEEAAADRNK-----FKKVEMPVFAGEDPDSWLFRAERYFQIHKLSDSEKML-VS 168

Query: 111 ALCMSGQALPWFRSLQNRNHLPKSWGEFRRALFERFEGG--DTMYERFTALQQDGTVREY 170
            +   G AL W+RS + R     SW   +  L  RF     + + ERF  ++Q+ TV +Y
Sbjct: 169 TISFDGPALNWYRSQEEREKF-TSWANLKERLLVRFRSSRDEKVLERFLRVKQESTVDDY 228

Query: 171 CSQFELYGSLLPDIPDSILEAKFMNGLDALIRAEVRVFRPKDILEIMETARLVE----DK 230
            + F+   + L D+PD +++  FMNGL   IRAEVR+ RPK + E+ME A+LVE    ++
Sbjct: 229 RNLFDKLVAPLSDVPDPVVKDTFMNGLFPWIRAEVRICRPKGLAEMMEFAQLVENREIER 288

Query: 231 NAAAMNPAVGG--------------------------------------TSWTTMKLRAT 290
           N   +N   GG                                          TMK++  
Sbjct: 289 NEVNLNNFAGGKYSQQNTVNNRTPANTNSDSKTNTNFPMRTITLRSSNNAEICTMKVKGK 348

Query: 291 INGRAVVVKVDSGATDNFISRKLAMELKLPVDNCGTGNFVFGS-----GETIFRGVPLKI 350
           I  R V++ +D GAT NFIS KL   L+LPV   G    + GS     G+ I   V +++
Sbjct: 349 IQEREVIILIDYGATHNFISEKLVESLQLPVKETGHYGVILGSGTVVQGKGICENVEIQL 408

Query: 351 HDTTFSVDCSPVKIEGNFEVILGKSWLRPM---QVDWKARTMKMDLGERTVTFQGDPSL 358
            +     +  P+++ G  +V+LG  WL  +    VDWK  T+      + ++ +GDPSL
Sbjct: 409 SNWKVKEEFLPLEL-GGVDVVLGMQWLHSLGITVVDWKNLTLTFSSEGKQISIKGDPSL 459

[Close]

BLAST of Sed0004979 vs. ExPASy TrEMBL
Match: A0A5A7T6B1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G002030 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-37
Identity = 110/359 (30.64%), Postives = 168/359 (46.80%), Query Frame = 0


Query: 51  ENKHTTEEEAKPTGEQAAIPGRMLEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDII 110
           E K  TEE A    +      + +E P+F G D  +W+ + ER FQ H + D  + + + 
Sbjct: 109 EGKTETEEAAADRNK-----FKKVEMPVFAGEDPDSWLFRAERYFQIHKLSDSEKML-VS 168

Query: 111 ALCMSGQALPWFRSLQNRNHLPKSWGEFRRALFERFEGG--DTMYERFTALQQDGTVREY 170
            +   G AL W+RS + R     SW   +  L  RF     + + ERF  ++Q+ TV +Y
Sbjct: 169 TISFDGPALNWYRSQEEREKF-TSWANLKERLLVRFRSSRDEKVLERFLRVKQESTVDDY 228

Query: 171 CSQFELYGSLLPDIPDSILEAKFMNGLDALIRAEVRVFRPKDILEIMETARLVE----DK 230
            + F+   + L D+PD +++  FMNGL   IRAEVR+ RPK + E+ME A+LVE    ++
Sbjct: 229 RNLFDKLVAPLSDVPDPVVKDTFMNGLFPWIRAEVRICRPKGLAEMMEFAQLVENREIER 288

Query: 231 NAAAMNPAVGG--------------------------------------TSWTTMKLRAT 290
           N   +N   GG                                          TMK++  
Sbjct: 289 NEVNLNNFAGGKYSQQNTVNNRTPANTNSDSKTNTNFPMRTITLRSSNNAEICTMKVKGK 348

Query: 291 INGRAVVVKVDSGATDNFISRKLAMELKLPVDNCGTGNFVFGS-----GETIFRGVPLKI 350
           I  R V++ +D GAT NFIS KL   L+LPV   G    + GS     G+ I   V +++
Sbjct: 349 IQEREVIILIDYGATHNFISEKLVESLQLPVKETGHYGVILGSGTVVQGKGICENVEIQL 408

Query: 351 HDTTFSVDCSPVKIEGNFEVILGKSWLRPM---QVDWKARTMKMDLGERTVTFQGDPSL 358
            +     +  P+++ G  +V+LG  WL  +    VDWK  T+      + +  +GDPSL
Sbjct: 409 SNWKVKEEFLPLEL-GGVDVVLGMQWLHSLGITVVDWKNLTLTFSSEGKQILIKGDPSL 459

[Close]

BLAST of Sed0004979 vs. TAIR 10
Match: AT3G29750.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-10
Identity = 55/234 (23.50%), Postives = 95/234 (40.60%), Query Frame = 0


Query: 156 FTALQQDGTVREYCSQFELYGSLLPDIPDSILEAKFMNGLDALIRAEVRVFRPKDI---- 215
           ++ +QQ+G+VR+Y  +FE        +P    E  F+ GL   ++  VR  +P  I    
Sbjct: 9   YSGIQQEGSVRDYRERFEALCLRSVTLPGQGFEEMFLQGLQPSLQTAVRELKPNGINSYQ 68

Query: 216 --------LEIMETARLVEDKNAAAMNP------------------AVGGTSWTTMKLRA 275
                   L +++    V  K    +N                    +  T    M+   
Sbjct: 69  SRQAELMSLTLVQAKLDVVKKKKGVINELEELEQDSYTLRQGMEQLVIDLTRNKGMRFYG 128

Query: 276 TINGRAVVVKVDSGATDNFISRKLAMELKLPVDNCGTGNFVFGSGETI-----FRGVPLK 335
            I    VVV +DSGATDNFI  +LA  LKLP       + + G  + I       G+ L 
Sbjct: 129 FILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCLGIRLW 188

Query: 336 IHDTTFSVDCSPVKI-EGNFEVILGKSWLRPM---QVDWKARTMKMDLGERTVT 351
           + +   + +   + + + + +VILG  WL  +    V+W+ +       ++ +T
Sbjct: 189 VQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFSFSHNQQWIT 242

[Close]

BLAST of Sed0004979 vs. TAIR 10
Match: AT3G42723.1 (aminoacyl-tRNA ligases;ATP binding;nucleotide binding )

HSP 1 Score: 62.8 bits (151), Expect = 6.6e-10
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 107 IDIIALCMSGQALPWFRSLQNRNHLPKSWGEFRRALFERFEGGDTM----YERFTALQQD 166
           + I+   + G    W + L  +N  P SW EF+  +    E   TM       ++ +QQ+
Sbjct: 293 LQIVYSNLEGDIGQWIKHLWKKNS-PTSWKEFKCMMAR--ETKTTMKVNHQPHYSGIQQE 352

Query: 167 GTVREYCSQFE--LYGSLLPDIPDSILEAKFMNGLDALIRAEVRVFRPKDILEIMETARL 226
           G+VREY  +FE    GS++  +P   LEA F+ GL   ++  VR  +P  I+++M+TA+ 
Sbjct: 353 GSVREYRERFEALCLGSVI--LPGQGLEALFLQGLQPSLQTAVRELKPNGIVQMMDTAQW 412

[Close]

BLAST of Sed0004979 vs. TAIR 10
Match: AT1G67020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; Has 72 Blast hits to 72 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 8.9e-07
Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 72  RMLEFPLFDGTDSPTWILKMERLFQYHAMDDFARTIDIIALCMSGQALPWFRSLQNRNHL 131
           R +E P+FDG+    W  K+ER F+     D +  +D++AL + G AL WF  L+  + L
Sbjct: 108 RRIEMPVFDGSGVYEWFSKVERFFRVGRYQD-SDKLDLVALSLEGVALKWF--LREMSTL 167

Query: 132 P-KSWGEFRRALFERFE 148
             + W  F + L  RF+
Sbjct: 168 EFRDWNSFEQRLLARFD 181

[Close]

BLAST of Sed0004979 vs. TAIR 10
Match: AT3G30770.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.2e-05
Identity = 39/137 (28.47%), Postives = 61/137 (44.53%), Query Frame = 0


Query: 211 ILEIMETARLVEDKNAAAMNPAVGGTSWTTMKLRATINGRAVVVKVDSGATDNFISRKLA 270
           +LE  +T R V+ ++          T    M+    I+   VVV +DSGAT+NFIS +LA
Sbjct: 260 LLEDFKTIRQVKRQSTTEF------TKGKDMRFYGFISCHKVVVVIDSGATNNFISDELA 319

Query: 271 MELKLPVDNCGTGNFVFGSGETIFRGVPLKIHDTTFSVD--CSPVKIEGNF--------- 330
           + LKLP       + + G  + I      +   T F ++     V+I  NF         
Sbjct: 320 LVLKLPTSTTNQASVLLGQRQCI------QTIGTCFGINLLVQEVEINENFLLLDLTKTD 379

Query: 331 -EVILGKSWLRPMQVDW 336
            +VILG    + ++  W
Sbjct: 380 VDVILGYGGSQNLERQW 384

The following BLAST results are available for this feature:

BLAST of Sed0004979 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652678.1	2.5e-67	48.63	hypothetical protein Csa_013756 [Cucumis sativus]	[more]
KAA0056890.1	6.7e-65	43.47	aminoacyl-tRNA ligase [Cucumis melo var. makuwa] >TYJ99393.1 aminoacyl-tRNA liga...	[more]
XP_016900762.1	1.7e-60	43.32	PREDICTED: uncharacterized protein LOC107991016 [Cucumis melo]	[more]
KAF7812804.1	1.6e-37	28.95	Retrotransposable element Tf2 [Senna tora]	[more]
TYK06549.1	2.0e-37	30.64	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0004979 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004979 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJD9	3.2e-65	43.47	Aminoacyl-tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]
A0A1S4DXQ7	8.3e-61	43.32	uncharacterized protein LOC107991016 OS=Cucumis melo OX=3656 GN=LOC107991016 PE=...	[more]
A0A0A0LUB3	1.7e-42	55.41	Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064...	[more]
A0A5D3C860	9.8e-38	30.64	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7T6B1	1.7e-37	30.64	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Sed0004979 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29750.1	1.0e-10	23.50	Eukaryotic aspartyl protease family protein	[more]
AT3G42723.1	6.6e-10	31.75	aminoacyl-tRNA ligases;ATP binding;nucleotide binding	[more]
AT1G67020.1	8.9e-07	35.06	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G30770.1	2.2e-05	28.47	Eukaryotic aspartyl protease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59
None	No IPR available	PFAM	PF08284	RVP_2	coord: 246..336 e-value: 1.2E-7 score: 31.6
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 234..353
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 66..227
None	No IPR available	PANTHER	PTHR34482:SF20	SUBFAMILY NOT NAMED	coord: 234..353
None	No IPR available	PANTHER	PTHR34482:SF20	SUBFAMILY NOT NAMED	coord: 66..227
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 243..329 e-value: 3.65862E-13 score: 62.7392
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 109..196 e-value: 3.5E-12 score: 46.4
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 223..353 e-value: 4.0E-16 score: 60.9
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 236..332

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004979.1	Sed0004979.1	mRNA