Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGCAACGTCAAAGCAACAGCTTCCTTGCTCGAACGGGTTCTACTTACTTGCGCATCTCAGGTTTGTCATTGGGATTGAAAGTGATTACATAAATACTGGATTGTGTTCTTCTTTTAAATGCAATATTTGATGACAAATGTTCATTAGAGTGCATTCTTGTTAGTGTAGTCTTAACCTCAGTTGGGGATTGGCTTCTTGTCCCTTAGCCTTCGTGTACCTATTTTTGATGATGCATTTGTTTTTATGAAAGGTAAAGCTATTTTTAACAACAAAGATGTGTGGTCTTGGTTATTACTTATTGGGTTCTTTTTAATCTACAAATGCCACAATGTTTTTGGGGGAGTTTCTTTTTATTCATTGATTGAACAACTTTTGTGTATATATATATATAGAATGGTGCCAGGTATGTATTTATGGAAATGTCATGAACTTGTACAAAGTTAACTGTGTATAGTTTGAATCACGATTCGGATTGAGGTTTACTGCAATACTATATGATTGATGTTCTATGTTTGCTTGACGAGTTAGTGTTTTCTTAGATGGTTTTTGCTTTTCTCTTTTGGGAATGTTGGGGTTCGTGTTGCAGCAAAGGTTCCCAAAGTTGAACGTGATATGTGTTTGAAAGGATTTGTTGCTCTGAAATCTTGCATGCAAAATACGGTATATATTTATATATATCAACATTCATATTAGAGAATATGGGGTTCCACCTCAAAACCAAACTAATTGGCTACGAAGGAAGTAACCCATATCTTTTTTATATTGATGTTGGACTCCCCCACTTTCCAATGTGGGACAATTGAGATCTCAACGATTCGTAATTCCTTTCTTAGCATACATGAGAAAAAGAATAACTTTAAGGTCGATTGATAACAGTTCTGCCTCTGGTTGGGTTGTCTGTAAGCGTATCTAACTTCGGTAAAAATATTCAGAAACTACTCAAGAACACAAGAAAATAACAAATGTATGTAATCCCTGTAATATAGAGTTCTTCTATATTCAGTAGGAGATATTCTCATTAATAAACACATAATAACAGAAAAATAAGCAACATGATGACAACAAGAACCCACAACATATAGAGAGTGCTAACTGGTAACCTCCTTTAAGGCAAGCCTTCCAAATTCTTCACCCCAATATAATGGCCTTATACTATTATTTATAATCAAGGCCTTCCTAAATAATTAATTACCCTTGCACCCCTTAGCATCCTTATACTTATTTACTAATATTTTTATTTGTTTTTAGTTTACTTCCAAAATTGTATATAAAATCTTAGTCAAATTTAAGAAGTAAAAAAGAAAACTTAAGTATACAAGTGAAAAACTAAATGAAAAAAGAACTTTAAGCTTCGTTTTAAAAACAAAACTGTCATCAAAGGTGGCTTTCTTTTGTTGAAATATTTGCACTGAAGTATCGAATGGTTGTTGGATAACTTGGTGGGAAACCATAGGCATCTTTGCTTCACTGAAGAGAACATAATACGTGGAGTTGTATTGGTTGGAGTAGAGAAGTTGGAGAAATCTTCTACATTCGCGGCATTGAAGCGAACATGGTATTAACTATCTTATAAAACAATACTTGCTCATTTATACATGTTTTCTGCAGTGAGGCTTGAATGAATAAGCTTAACTTGGATTGCTTTAATTGCTTGATTCCACTTTCAGAAACATTTCTCAAAGGTTAAAAGGTGACTTGATAGGCTGGAAGACCATCAAGATTACAACCCAGTGCTGGTCTAAGCAGATCAAGTGCCCTCTCACATGTTTATATGCAATATCCACACTTACGACGTAGAATTCCTCGACCAAGGGGCTTATTTAACAATGACGTATATAAGTTATTGATCTGCCCAACAGTGGATCAGGTAATCCATCTTCAGCTGCTGCACTTGTACTCAAAATGCATCTGAAGCGTTAAACTTGTTTTTGTTAATGTTTCTTTCTTTCTTTTCTACAGATCTTCTCATGAAAAACAGTTCCGTTTAATCCTGCTAACATTTATACCACTGATGCAATTACGGAAGTGCCCATTTTATCTATTCAATATTCCTTTGACTTAAAGATCATTGCAATACAAAGATCATTGCAATACCTAATATCGTTTCGACAAACTTTATCATTGCAATTGTGTTGGGTATTTGGGAAGTTAGAAAATTGAACAGTTTTTGGAGGATGTAGGCAATGAAGTAGGAAAGGTGTT
mRNA sequence
ATGGATCGCAACGTCAAAGCAACAGCTTCCTTGCTCGAACGGGTTCTACTTACTTGCGCATCTCAGTGTTTTCTTAGATGGTTTTTGCTTTTCTCTTTTGGGAATGTTGGGGTTCGTGTTGCAGCAAAGGTTCCCAAAGTTGAACGTGATATGTGTTTGAAAGGATTTGTTGCTCTGAAATCTTGCATGCAAAATACGTCAAATTTAAGAAGTAAAAAAGAAAACTTAAGTATACAAGTGAAAAACTAAATGAAAAAAGAACTTTAAGCTTCGTTTTAAAAACAAAACTGTCATCAAAGGTGGCTTTCTTTTGTTGAAATATTTGCACTGAAGTATCGAATGGTTGTTGGATAACTTGGTGGGAAACCATAGGCATCTTTGCTTCACTGAAGAGAACATAATACGTGGAGTTGTATTGGTTGGAGTAGAGAAGTTGGAGAAATCTTCTACATTCGCGGCATTGAAGCGAACATGAAACATTTCTCAAAGGTTAAAAGGTGACTTGATAGGCTGGAAGACCATCAAGATTACAACCCAGTGCTGGTCTAAGCAGATCAAGTGCCCTCTCACATGTTTATATGCAATATCCACACTTACGACGTAGAATTCCTCGACCAAGGGGCTTATTTAACAATGACGTATATAAGTTATTGATCTGCCCAACAGTGGATCAGATCTTCTCATGAAAAACAGTTCCGTTTAATCCTGCTAACATTTATACCACTGATGCAATTACGGAAGTGCCCATTTTATCTATTCAATATTCCTTTGACTTAAAGATCATTGCAATACAAAGATCATTGCAATACCTAATATCGTTTCGACAAACTTTATCATTGCAATTGTGTTGGGTATTTGGGAAGTTAGAAAATTGAACAGTTTTTGGAGGATGTAGGCAATGAAGTAGGAAAGGTGTT
Coding sequence (CDS)
ATGGATCGCAACGTCAAAGCAACAGCTTCCTTGCTCGAACGGGTTCTACTTACTTGCGCATCTCAGTGTTTTCTTAGATGGTTTTTGCTTTTCTCTTTTGGGAATGTTGGGGTTCGTGTTGCAGCAAAGGTTCCCAAAGTTGAACGTGATATGTGTTTGAAAGGATTTGTTGCTCTGAAATCTTGCATGCAAAATACGTCAAATTTAAGAAGTAAAAAAGAAAACTTAAGTATACAAGTGAAAAACTAA
Protein sequence
MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALKSCMQNTSNLRSKKENLSIQVKN
Homology
BLAST of Sed0004834 vs. NCBI nr
Match:
KAG6580793.1 (hypothetical protein SDJN03_20795, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 77.8 bits (190), Expect = 4.9e-11
Identity = 46/72 (63.89%), Postives = 50/72 (69.44%), Query Frame = 0
Query: 1 MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
MDR KATASLL+RVL+TCASQ G VA+KVPKVERDMCLK F+ALK
Sbjct: 98 MDRKDKATASLLKRVLVTCASQA----------KQYGGCVASKVPKVERDMCLKEFIALK 157
Query: 61 SCMQNTSNLRSK 73
SCMQNT LR K
Sbjct: 158 SCMQNT--LRGK 157
BLAST of Sed0004834 vs. NCBI nr
Match:
KAE8651130.1 (hypothetical protein Csa_002376 [Cucumis sativus])
HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 42/66 (63.64%), Postives = 47/66 (71.21%), Query Frame = 0
Query: 1 MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
MDR +ATASLL+RVL++CASQ G VAAKVPKVERDMCLK F+ALK
Sbjct: 7 MDRKDRATASLLKRVLVSCASQA----------KQYGGCVAAKVPKVERDMCLKEFIALK 62
Query: 61 SCMQNT 67
SCMQNT
Sbjct: 67 SCMQNT 62
BLAST of Sed0004834 vs. NCBI nr
Match:
XP_016899714.1 (PREDICTED: uncharacterized protein LOC107990619 [Cucumis melo])
HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 0
Query: 1 MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
MD+ +ATASLL+RVL++CASQ G VAAKVPKVERDMCLK F+ALK
Sbjct: 1 MDQKDRATASLLKRVLVSCASQA----------KQYGGCVAAKVPKVERDMCLKEFIALK 60
Query: 61 SCMQNTSNLRSK 73
SCMQNT LR K
Sbjct: 61 SCMQNT--LRGK 60
BLAST of Sed0004834 vs. NCBI nr
Match:
PRQ44425.1 (hypothetical protein RchiOBHm_Chr3g0479131 [Rosa chinensis])
HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0
Query: 6 KATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALKSCMQN 65
K +AS L+R+L+TCA+Q G VAAKVP+VERDMCLK F+ALKSCMQN
Sbjct: 4 KKSASKLQRILVTCAAQA----------REYGGCVAAKVPQVERDMCLKEFLALKSCMQN 58
Query: 66 TSNLRSK 73
LR K
Sbjct: 64 V--LRGK 58
BLAST of Sed0004834 vs. NCBI nr
Match:
TYG83353.1 (hypothetical protein ES288_D01G161400v1 [Gossypium darwinii])
HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 0
Query: 1 MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
+D K T S L R+L+ C +Q G VAAKVP+VERDMCLK F+ALK
Sbjct: 7 VDMKEKKTISPLRRILVNCTAQA----------NEYGACVAAKVPEVERDMCLKEFLALK 66
Query: 61 SCMQNTSNLRSK 73
+CMQNT LR K
Sbjct: 67 TCMQNT--LRGK 66
BLAST of Sed0004834 vs. ExPASy TrEMBL
Match:
A0A0A0LB85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G799640 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 6.8e-11
Identity = 45/72 (62.50%), Postives = 50/72 (69.44%), Query Frame = 0
Query: 1 MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
MDR +ATASLL+RVL++CASQ G VAAKVPKVERDMCLK F+ALK
Sbjct: 34 MDRKDRATASLLKRVLVSCASQA----------KQYGGCVAAKVPKVERDMCLKEFIALK 93
Query: 61 SCMQNTSNLRSK 73
SCMQNT LR K
Sbjct: 94 SCMQNT--LRGK 93
BLAST of Sed0004834 vs. ExPASy TrEMBL
Match:
A0A1S4DUQ7 (uncharacterized protein LOC107990619 OS=Cucumis melo OX=3656 GN=LOC107990619 PE=4 SV=1)
HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 0
Query: 1 MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
MD+ +ATASLL+RVL++CASQ G VAAKVPKVERDMCLK F+ALK
Sbjct: 1 MDQKDRATASLLKRVLVSCASQA----------KQYGGCVAAKVPKVERDMCLKEFIALK 60
Query: 61 SCMQNTSNLRSK 73
SCMQNT LR K
Sbjct: 61 SCMQNT--LRGK 60
BLAST of Sed0004834 vs. ExPASy TrEMBL
Match:
A0A2P6RDE1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0479131 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 7.8e-07
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0
Query: 6 KATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALKSCMQN 65
K +AS L+R+L+TCA+Q G VAAKVP+VERDMCLK F+ALKSCMQN
Sbjct: 4 KKSASKLQRILVTCAAQA----------REYGGCVAAKVPQVERDMCLKEFLALKSCMQN 58
Query: 66 TSNLRSK 73
LR K
Sbjct: 64 V--LRGK 58
BLAST of Sed0004834 vs. ExPASy TrEMBL
Match:
A0A5D2DQH9 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D01G161400v1 PE=4 SV=1)
HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 0
Query: 1 MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
+D K T S L R+L+ C +Q G VAAKVP+VERDMCLK F+ALK
Sbjct: 7 VDMKEKKTISPLRRILVNCTAQA----------NEYGACVAAKVPEVERDMCLKEFLALK 66
Query: 61 SCMQNTSNLRSK 73
+CMQNT LR K
Sbjct: 67 TCMQNT--LRGK 66
BLAST of Sed0004834 vs. ExPASy TrEMBL
Match:
M5W8A2 (Mic1 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa001568mg PE=4 SV=1)
HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0
Query: 8 TASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALKSCMQNTS 67
+ S L+R+L+TCA+Q G VAAKVP+VERDMCLK F+ALKSCMQN S
Sbjct: 6 STSTLKRILVTCAAQA----------KEYGGCVAAKVPQVERDMCLKEFLALKSCMQNVS 57
Query: 68 NL 70
++
Sbjct: 66 SI 57
BLAST of Sed0004834 vs. TAIR 10
Match:
AT3G12012.1 (conserved peptide upstream open reading frame 20 )
HSP 1 Score: 54.3 bits (129), Expect = 5.4e-08
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 0
Query: 1 MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
M TAS L R+L TC+ Q + G VA+KV +VERD+CLK F+ALK
Sbjct: 1 MKEKNSTTASTLGRILATCSKQA----------KDYGSCVASKVHEVERDICLKEFLALK 56
Query: 61 SCMQNT 67
SCMQ+T
Sbjct: 61 SCMQHT 56
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6580793.1 | 4.9e-11 | 63.89 | hypothetical protein SDJN03_20795, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAE8651130.1 | 1.4e-10 | 63.64 | hypothetical protein Csa_002376 [Cucumis sativus] | [more] |
XP_016899714.1 | 4.1e-10 | 61.11 | PREDICTED: uncharacterized protein LOC107990619 [Cucumis melo] | [more] |
PRQ44425.1 | 1.6e-06 | 55.22 | hypothetical protein RchiOBHm_Chr3g0479131 [Rosa chinensis] | [more] |
TYG83353.1 | 2.8e-06 | 50.00 | hypothetical protein ES288_D01G161400v1 [Gossypium darwinii] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LB85 | 6.8e-11 | 62.50 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G799640 PE=4 SV=1 | [more] |
A0A1S4DUQ7 | 2.0e-10 | 61.11 | uncharacterized protein LOC107990619 OS=Cucumis melo OX=3656 GN=LOC107990619 PE=... | [more] |
A0A2P6RDE1 | 7.8e-07 | 55.22 | Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0479131 PE=4... | [more] |
A0A5D2DQH9 | 1.3e-06 | 50.00 | Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D01G161400v1 PE=... | [more] |
M5W8A2 | 1.3e-06 | 53.23 | Mic1 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa001568mg PE... | [more] |
Match Name | E-value | Identity | Description | |
AT3G12012.1 | 5.4e-08 | 46.97 | conserved peptide upstream open reading frame 20 | [more] |