Sed0004834 (gene) Chayote v1

Overview
NameSed0004834
Typegene
OrganismSechium edule (Chayote v1)
DescriptionMic1 domain-containing protein
LocationLG12: 9434373 .. 9436580 (+)
RNA-Seq ExpressionSed0004834
SyntenySed0004834
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGCAACGTCAAAGCAACAGCTTCCTTGCTCGAACGGGTTCTACTTACTTGCGCATCTCAGGTTTGTCATTGGGATTGAAAGTGATTACATAAATACTGGATTGTGTTCTTCTTTTAAATGCAATATTTGATGACAAATGTTCATTAGAGTGCATTCTTGTTAGTGTAGTCTTAACCTCAGTTGGGGATTGGCTTCTTGTCCCTTAGCCTTCGTGTACCTATTTTTGATGATGCATTTGTTTTTATGAAAGGTAAAGCTATTTTTAACAACAAAGATGTGTGGTCTTGGTTATTACTTATTGGGTTCTTTTTAATCTACAAATGCCACAATGTTTTTGGGGGAGTTTCTTTTTATTCATTGATTGAACAACTTTTGTGTATATATATATATAGAATGGTGCCAGGTATGTATTTATGGAAATGTCATGAACTTGTACAAAGTTAACTGTGTATAGTTTGAATCACGATTCGGATTGAGGTTTACTGCAATACTATATGATTGATGTTCTATGTTTGCTTGACGAGTTAGTGTTTTCTTAGATGGTTTTTGCTTTTCTCTTTTGGGAATGTTGGGGTTCGTGTTGCAGCAAAGGTTCCCAAAGTTGAACGTGATATGTGTTTGAAAGGATTTGTTGCTCTGAAATCTTGCATGCAAAATACGGTATATATTTATATATATCAACATTCATATTAGAGAATATGGGGTTCCACCTCAAAACCAAACTAATTGGCTACGAAGGAAGTAACCCATATCTTTTTTATATTGATGTTGGACTCCCCCACTTTCCAATGTGGGACAATTGAGATCTCAACGATTCGTAATTCCTTTCTTAGCATACATGAGAAAAAGAATAACTTTAAGGTCGATTGATAACAGTTCTGCCTCTGGTTGGGTTGTCTGTAAGCGTATCTAACTTCGGTAAAAATATTCAGAAACTACTCAAGAACACAAGAAAATAACAAATGTATGTAATCCCTGTAATATAGAGTTCTTCTATATTCAGTAGGAGATATTCTCATTAATAAACACATAATAACAGAAAAATAAGCAACATGATGACAACAAGAACCCACAACATATAGAGAGTGCTAACTGGTAACCTCCTTTAAGGCAAGCCTTCCAAATTCTTCACCCCAATATAATGGCCTTATACTATTATTTATAATCAAGGCCTTCCTAAATAATTAATTACCCTTGCACCCCTTAGCATCCTTATACTTATTTACTAATATTTTTATTTGTTTTTAGTTTACTTCCAAAATTGTATATAAAATCTTAGTCAAATTTAAGAAGTAAAAAAGAAAACTTAAGTATACAAGTGAAAAACTAAATGAAAAAAGAACTTTAAGCTTCGTTTTAAAAACAAAACTGTCATCAAAGGTGGCTTTCTTTTGTTGAAATATTTGCACTGAAGTATCGAATGGTTGTTGGATAACTTGGTGGGAAACCATAGGCATCTTTGCTTCACTGAAGAGAACATAATACGTGGAGTTGTATTGGTTGGAGTAGAGAAGTTGGAGAAATCTTCTACATTCGCGGCATTGAAGCGAACATGGTATTAACTATCTTATAAAACAATACTTGCTCATTTATACATGTTTTCTGCAGTGAGGCTTGAATGAATAAGCTTAACTTGGATTGCTTTAATTGCTTGATTCCACTTTCAGAAACATTTCTCAAAGGTTAAAAGGTGACTTGATAGGCTGGAAGACCATCAAGATTACAACCCAGTGCTGGTCTAAGCAGATCAAGTGCCCTCTCACATGTTTATATGCAATATCCACACTTACGACGTAGAATTCCTCGACCAAGGGGCTTATTTAACAATGACGTATATAAGTTATTGATCTGCCCAACAGTGGATCAGGTAATCCATCTTCAGCTGCTGCACTTGTACTCAAAATGCATCTGAAGCGTTAAACTTGTTTTTGTTAATGTTTCTTTCTTTCTTTTCTACAGATCTTCTCATGAAAAACAGTTCCGTTTAATCCTGCTAACATTTATACCACTGATGCAATTACGGAAGTGCCCATTTTATCTATTCAATATTCCTTTGACTTAAAGATCATTGCAATACAAAGATCATTGCAATACCTAATATCGTTTCGACAAACTTTATCATTGCAATTGTGTTGGGTATTTGGGAAGTTAGAAAATTGAACAGTTTTTGGAGGATGTAGGCAATGAAGTAGGAAAGGTGTT

mRNA sequence

ATGGATCGCAACGTCAAAGCAACAGCTTCCTTGCTCGAACGGGTTCTACTTACTTGCGCATCTCAGTGTTTTCTTAGATGGTTTTTGCTTTTCTCTTTTGGGAATGTTGGGGTTCGTGTTGCAGCAAAGGTTCCCAAAGTTGAACGTGATATGTGTTTGAAAGGATTTGTTGCTCTGAAATCTTGCATGCAAAATACGTCAAATTTAAGAAGTAAAAAAGAAAACTTAAGTATACAAGTGAAAAACTAAATGAAAAAAGAACTTTAAGCTTCGTTTTAAAAACAAAACTGTCATCAAAGGTGGCTTTCTTTTGTTGAAATATTTGCACTGAAGTATCGAATGGTTGTTGGATAACTTGGTGGGAAACCATAGGCATCTTTGCTTCACTGAAGAGAACATAATACGTGGAGTTGTATTGGTTGGAGTAGAGAAGTTGGAGAAATCTTCTACATTCGCGGCATTGAAGCGAACATGAAACATTTCTCAAAGGTTAAAAGGTGACTTGATAGGCTGGAAGACCATCAAGATTACAACCCAGTGCTGGTCTAAGCAGATCAAGTGCCCTCTCACATGTTTATATGCAATATCCACACTTACGACGTAGAATTCCTCGACCAAGGGGCTTATTTAACAATGACGTATATAAGTTATTGATCTGCCCAACAGTGGATCAGATCTTCTCATGAAAAACAGTTCCGTTTAATCCTGCTAACATTTATACCACTGATGCAATTACGGAAGTGCCCATTTTATCTATTCAATATTCCTTTGACTTAAAGATCATTGCAATACAAAGATCATTGCAATACCTAATATCGTTTCGACAAACTTTATCATTGCAATTGTGTTGGGTATTTGGGAAGTTAGAAAATTGAACAGTTTTTGGAGGATGTAGGCAATGAAGTAGGAAAGGTGTT

Coding sequence (CDS)

ATGGATCGCAACGTCAAAGCAACAGCTTCCTTGCTCGAACGGGTTCTACTTACTTGCGCATCTCAGTGTTTTCTTAGATGGTTTTTGCTTTTCTCTTTTGGGAATGTTGGGGTTCGTGTTGCAGCAAAGGTTCCCAAAGTTGAACGTGATATGTGTTTGAAAGGATTTGTTGCTCTGAAATCTTGCATGCAAAATACGTCAAATTTAAGAAGTAAAAAAGAAAACTTAAGTATACAAGTGAAAAACTAA

Protein sequence

MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALKSCMQNTSNLRSKKENLSIQVKN
Homology
BLAST of Sed0004834 vs. NCBI nr
Match: KAG6580793.1 (hypothetical protein SDJN03_20795, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-11
Identity = 46/72 (63.89%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 1   MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
           MDR  KATASLL+RVL+TCASQ              G  VA+KVPKVERDMCLK F+ALK
Sbjct: 98  MDRKDKATASLLKRVLVTCASQA----------KQYGGCVASKVPKVERDMCLKEFIALK 157

Query: 61  SCMQNTSNLRSK 73
           SCMQNT  LR K
Sbjct: 158 SCMQNT--LRGK 157

BLAST of Sed0004834 vs. NCBI nr
Match: KAE8651130.1 (hypothetical protein Csa_002376 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 42/66 (63.64%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 1  MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
          MDR  +ATASLL+RVL++CASQ              G  VAAKVPKVERDMCLK F+ALK
Sbjct: 7  MDRKDRATASLLKRVLVSCASQA----------KQYGGCVAAKVPKVERDMCLKEFIALK 62

Query: 61 SCMQNT 67
          SCMQNT
Sbjct: 67 SCMQNT 62

BLAST of Sed0004834 vs. NCBI nr
Match: XP_016899714.1 (PREDICTED: uncharacterized protein LOC107990619 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 1  MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
          MD+  +ATASLL+RVL++CASQ              G  VAAKVPKVERDMCLK F+ALK
Sbjct: 1  MDQKDRATASLLKRVLVSCASQA----------KQYGGCVAAKVPKVERDMCLKEFIALK 60

Query: 61 SCMQNTSNLRSK 73
          SCMQNT  LR K
Sbjct: 61 SCMQNT--LRGK 60

BLAST of Sed0004834 vs. NCBI nr
Match: PRQ44425.1 (hypothetical protein RchiOBHm_Chr3g0479131 [Rosa chinensis])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 6  KATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALKSCMQN 65
          K +AS L+R+L+TCA+Q              G  VAAKVP+VERDMCLK F+ALKSCMQN
Sbjct: 4  KKSASKLQRILVTCAAQA----------REYGGCVAAKVPQVERDMCLKEFLALKSCMQN 58

Query: 66 TSNLRSK 73
             LR K
Sbjct: 64 V--LRGK 58

BLAST of Sed0004834 vs. NCBI nr
Match: TYG83353.1 (hypothetical protein ES288_D01G161400v1 [Gossypium darwinii])

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 1  MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
          +D   K T S L R+L+ C +Q              G  VAAKVP+VERDMCLK F+ALK
Sbjct: 7  VDMKEKKTISPLRRILVNCTAQA----------NEYGACVAAKVPEVERDMCLKEFLALK 66

Query: 61 SCMQNTSNLRSK 73
          +CMQNT  LR K
Sbjct: 67 TCMQNT--LRGK 66

BLAST of Sed0004834 vs. ExPASy TrEMBL
Match: A0A0A0LB85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G799640 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.8e-11
Identity = 45/72 (62.50%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 1  MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
          MDR  +ATASLL+RVL++CASQ              G  VAAKVPKVERDMCLK F+ALK
Sbjct: 34 MDRKDRATASLLKRVLVSCASQA----------KQYGGCVAAKVPKVERDMCLKEFIALK 93

Query: 61 SCMQNTSNLRSK 73
          SCMQNT  LR K
Sbjct: 94 SCMQNT--LRGK 93

BLAST of Sed0004834 vs. ExPASy TrEMBL
Match: A0A1S4DUQ7 (uncharacterized protein LOC107990619 OS=Cucumis melo OX=3656 GN=LOC107990619 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 1  MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
          MD+  +ATASLL+RVL++CASQ              G  VAAKVPKVERDMCLK F+ALK
Sbjct: 1  MDQKDRATASLLKRVLVSCASQA----------KQYGGCVAAKVPKVERDMCLKEFIALK 60

Query: 61 SCMQNTSNLRSK 73
          SCMQNT  LR K
Sbjct: 61 SCMQNT--LRGK 60

BLAST of Sed0004834 vs. ExPASy TrEMBL
Match: A0A2P6RDE1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0479131 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.8e-07
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 6  KATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALKSCMQN 65
          K +AS L+R+L+TCA+Q              G  VAAKVP+VERDMCLK F+ALKSCMQN
Sbjct: 4  KKSASKLQRILVTCAAQA----------REYGGCVAAKVPQVERDMCLKEFLALKSCMQN 58

Query: 66 TSNLRSK 73
             LR K
Sbjct: 64 V--LRGK 58

BLAST of Sed0004834 vs. ExPASy TrEMBL
Match: A0A5D2DQH9 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D01G161400v1 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 1  MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
          +D   K T S L R+L+ C +Q              G  VAAKVP+VERDMCLK F+ALK
Sbjct: 7  VDMKEKKTISPLRRILVNCTAQA----------NEYGACVAAKVPEVERDMCLKEFLALK 66

Query: 61 SCMQNTSNLRSK 73
          +CMQNT  LR K
Sbjct: 67 TCMQNT--LRGK 66

BLAST of Sed0004834 vs. ExPASy TrEMBL
Match: M5W8A2 (Mic1 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa001568mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 8  TASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALKSCMQNTS 67
          + S L+R+L+TCA+Q              G  VAAKVP+VERDMCLK F+ALKSCMQN S
Sbjct: 6  STSTLKRILVTCAAQA----------KEYGGCVAAKVPQVERDMCLKEFLALKSCMQNVS 57

Query: 68 NL 70
          ++
Sbjct: 66 SI 57

BLAST of Sed0004834 vs. TAIR 10
Match: AT3G12012.1 (conserved peptide upstream open reading frame 20 )

HSP 1 Score: 54.3 bits (129), Expect = 5.4e-08
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 0

Query: 1  MDRNVKATASLLERVLLTCASQCFLRWFLLFSFGNVGVRVAAKVPKVERDMCLKGFVALK 60
          M      TAS L R+L TC+ Q            + G  VA+KV +VERD+CLK F+ALK
Sbjct: 1  MKEKNSTTASTLGRILATCSKQA----------KDYGSCVASKVHEVERDICLKEFLALK 56

Query: 61 SCMQNT 67
          SCMQ+T
Sbjct: 61 SCMQHT 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6580793.14.9e-1163.89hypothetical protein SDJN03_20795, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8651130.11.4e-1063.64hypothetical protein Csa_002376 [Cucumis sativus][more]
XP_016899714.14.1e-1061.11PREDICTED: uncharacterized protein LOC107990619 [Cucumis melo][more]
PRQ44425.11.6e-0655.22hypothetical protein RchiOBHm_Chr3g0479131 [Rosa chinensis][more]
TYG83353.12.8e-0650.00hypothetical protein ES288_D01G161400v1 [Gossypium darwinii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LB856.8e-1162.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G799640 PE=4 SV=1[more]
A0A1S4DUQ72.0e-1061.11uncharacterized protein LOC107990619 OS=Cucumis melo OX=3656 GN=LOC107990619 PE=... [more]
A0A2P6RDE17.8e-0755.22Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0479131 PE=4... [more]
A0A5D2DQH91.3e-0650.00Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D01G161400v1 PE=... [more]
M5W8A21.3e-0653.23Mic1 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa001568mg PE... [more]
Match NameE-valueIdentityDescription
AT3G12012.15.4e-0846.97conserved peptide upstream open reading frame 20 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004834.1Sed0004834.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0043231 intracellular membrane-bounded organelle