Sed0004448 (gene) Chayote v1

Overview


Name	Sed0004448
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Dynein light chain
Location	LG08: 6088007 .. 6088782 (-)
RNA-Seq Expression	Sed0004448
Synteny	Sed0004448

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTATTCCATACGCAAAACAGCAGTCCTTGTAAGCGGTGAGAAAGAAATAAAGAAAGATAGAGAGGTTTGCAAATTGAAATTGAAATTGAAATTTATTTATTTTGTATTATACATTTCTTTTCTCCACTTATGCACACACACACATATATATATAAAATAAAGCTCAAAATTCCAAACCCTTGAACTGATCTAATTATAAATAATCCTAATATTCTCAAACAGAGAGGAAAACCAAGAAGATGCTGGAAGGGAAAGCCACGGTGAAAGAAACCGACATGTCGGAGAAGATGAAGCTTCACGCCATGGCCTCTGCATCTCACGCTCTTGATCTCTTCGACGTGTCGGATTGCCTCTCTCTTGCTTCCCATATCAAAAAGGTACACAATATATATTTAATTAAGTAATTAATTTCTTTAATAAATTCATTAACGCTATATATATGTAAATGGAAAAATTAGGAATTTGATCGGACTTATGGGAGTGGGTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCTAAGGGCTCTTTCATTTATTTTTCTCTTGAAACTCTCAATTTTCTCATCTTTAAAGCTGCTTCTCATTAATTCCTTCCTCAATTATTGTTACCCATCCACGAAACACAGATGAAATTATTTTATTTTCAGTGGCAGCTTCGTCTTTTCACTCTTCTCAATTTACATTGCACCAACCCTGTATATCTATGTGTATCACAATTGATTCTCTCAAACTTCTTGTCGTAGTATGTTTGATGATCA

mRNA sequence

GAAGTATTCCATACGCAAAACAGCAGTCCTTGTAAGCGGTGAGAAAGAAATAAAGAAAGATAGAGAGAGAGGAAAACCAAGAAGATGCTGGAAGGGAAAGCCACGGTGAAAGAAACCGACATGTCGGAGAAGATGAAGCTTCACGCCATGGCCTCTGCATCTCACGCTCTTGATCTCTTCGACGTGTCGGATTGCCTCTCTCTTGCTTCCCATATCAAAAAGGAATTTGATCGGACTTATGGGAGTGGGTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCTAAGGGCTCTTTCATTTATTTTTCTCTTGAAACTCTCAATTTTCTCATCTTTAAAGCTGCTTCTCATTAATTCCTTCCTCAATTATTGTTACCCATCCACGAAACACAGATGAAATTATTTTATTTTCAGTGGCAGCTTCGTCTTTTCACTCTTCTCAATTTACATTGCACCAACCCTGTATATCTATGTGTATCACAATTGATTCTCTCAAACTTCTTGTCGTAGTATGTTTGATGATCA

Coding sequence (CDS)

ATGCTGGAAGGGAAAGCCACGGTGAAAGAAACCGACATGTCGGAGAAGATGAAGCTTCACGCCATGGCCTCTGCATCTCACGCTCTTGATCTCTTCGACGTGTCGGATTGCCTCTCTCTTGCTTCCCATATCAAAAAGGAATTTGATCGGACTTATGGGAGTGGGTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCTAAGGGCTCTTTCATTTATTTTTCTCTTGAAACTCTCAATTTTCTCATCTTTAAAGCTGCTTCTCATTAA

Protein sequence

MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH

Homology

[Close]

BLAST of Sed0004448 vs. NCBI nr
Match: XP_022933771.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_022973196.1 dynein light chain 1, cytoplasmic-like [Cucurbita maxima] >XP_023529424.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo] >KAG6587968.1 hypothetical protein SDJN03_16533, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021857.1 hypothetical protein SDJN02_15585 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.2 bits (448), Expect = 6.7e-41
Identity = 85/93 (91.40%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKATVK+TDMSEKM++HA ASASHALDLFDVSDCLSLA+HIKKEFDR+YGSGWQCVV
Sbjct: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH 94
          GSNFGCFFTHSKG+FIYFSLETLNFLIFKAAS+
Sbjct: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN 93

[Close]

BLAST of Sed0004448 vs. NCBI nr
Match: XP_038878771.1 (dynein light chain 1, cytoplasmic-like [Benincasa hispida])

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKATVKETDMSEKM+ HAMASASHALDLFDVSD LSLA+HIKK+FDR YGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQSHAMASASHALDLFDVSDSLSLAAHIKKDFDRAYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH 94
          GSNFGCFFTHSKGSFIYFSLETLNFLIFK+ S+
Sbjct: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKSPSN 93

[Close]

BLAST of Sed0004448 vs. NCBI nr
Match: XP_008462685.1 (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 9.0e-38
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKATVKETDMSEKM++HAMASASHALDLFDVSD LSLAS+IKK+FD TYGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQMHAMASASHALDLFDVSDFLSLASYIKKDFDGTYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS 93
          GSNFGCFFTHS G+FIYFSLETLNFLIFK+ S
Sbjct: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92

[Close]

BLAST of Sed0004448 vs. NCBI nr
Match: XP_004150050.1 (dynein light chain 1, cytoplasmic [Cucumis sativus] >KAE8652965.1 hypothetical protein Csa_017734 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKATVKETDMSEKM++HAMASAS ALDLFDVSD LSLASHIKK+FD TYGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS 93
          GSNFGCFFTHS G+FIYFSLETLNFLIFK+ S
Sbjct: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92

[Close]

BLAST of Sed0004448 vs. NCBI nr
Match: XP_022144999.1 (dynein light chain 1, cytoplasmic-like [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-36
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGK  VKETDMSEKM++HAMASASHALDLFDVSDCLSLA+HIKKEFDRTYG GWQCVV
Sbjct: 1  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFK 90
          GSNFG FFTHS  +FIYF+LETLNFLIFK
Sbjct: 61 GSNFGSFFTHSTATFIYFALETLNFLIFK 89

[Close]

BLAST of Sed0004448 vs. ExPASy Swiss-Prot
Match: P61285 (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-14
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          M + KA +K  DMSE+M+  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKA 91
          G NFG + TH    FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Sed0004448 vs. ExPASy Swiss-Prot
Match: P63167 (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-14
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          M + KA +K  DMSE+M+  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKA 91
          G NFG + TH    FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Sed0004448 vs. ExPASy Swiss-Prot
Match: P61273 (Dynein light chain 1, cytoplasmic OS=Macaca fascicularis OX=9541 GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-14
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          M + KA +K  DMSE+M+  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKA 91
          G NFG + TH    FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Sed0004448 vs. ExPASy Swiss-Prot
Match: P63168 (Dynein light chain 1, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-14
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          M + KA +K  DMSE+M+  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKA 91
          G NFG + TH    FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Sed0004448 vs. ExPASy Swiss-Prot
Match: P63169 (Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus OX=9986 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-14
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          M + KA +K  DMSE+M+  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKA 91
          G NFG + TH    FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Sed0004448 vs. ExPASy TrEMBL
Match: A0A6J1I806 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111471695 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 85/93 (91.40%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKATVK+TDMSEKM++HA ASASHALDLFDVSDCLSLA+HIKKEFDR+YGSGWQCVV
Sbjct: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH 94
          GSNFGCFFTHSKG+FIYFSLETLNFLIFKAAS+
Sbjct: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN 93

[Close]

BLAST of Sed0004448 vs. ExPASy TrEMBL
Match: A0A6J1EZZ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111441083 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 85/93 (91.40%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKATVK+TDMSEKM++HA ASASHALDLFDVSDCLSLA+HIKKEFDR+YGSGWQCVV
Sbjct: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAASH 94
          GSNFGCFFTHSKG+FIYFSLETLNFLIFKAAS+
Sbjct: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN 93

[Close]

BLAST of Sed0004448 vs. ExPASy TrEMBL
Match: A0A1S3CJ38 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500988 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.4e-38
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKATVKETDMSEKM++HAMASASHALDLFDVSD LSLAS+IKK+FD TYGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQMHAMASASHALDLFDVSDFLSLASYIKKDFDGTYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS 93
          GSNFGCFFTHS G+FIYFSLETLNFLIFK+ S
Sbjct: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92

[Close]

BLAST of Sed0004448 vs. ExPASy TrEMBL
Match: A0A6J1CTX2 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111014529 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGK  VKETDMSEKM++HAMASASHALDLFDVSDCLSLA+HIKKEFDRTYG GWQCVV
Sbjct: 1  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFK 90
          GSNFG FFTHS  +FIYF+LETLNFLIFK
Sbjct: 61 GSNFGSFFTHSTATFIYFALETLNFLIFK 89

[Close]

BLAST of Sed0004448 vs. ExPASy TrEMBL
Match: A0A1S3UQ79 (Dynein light chain OS=Vigna radiata var. radiata OX=3916 GN=LOC106767782 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.1e-36
Identity = 74/92 (80.43%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKA VKETDMS KM++HAMA+ASHALDL+DVSDC+S+A+HIKKEFD  YG+GWQCVV
Sbjct: 1  MLEGKALVKETDMSPKMQIHAMAAASHALDLYDVSDCISVAAHIKKEFDSVYGNGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS 93
          GSNFGC+FTHS G+FIYF+LETLNFLIFK +S
Sbjct: 61 GSNFGCYFTHSSGTFIYFALETLNFLIFKGSS 92

[Close]

BLAST of Sed0004448 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-35
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKA V+++DM  KM++ AMA AS ALDLFDV DC S+A HIKKEFD  YGSGWQCVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS 93
          GSNFGCFFTHSKG+FIYF LETL FLIFK AS
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAS 92

[Close]

BLAST of Sed0004448 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 141.0 bits (354), Expect = 4.9e-34
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKA V+ETDM  KM++ AM  AS +LDLFDV D +S+A+HIKKEFD  YGSGWQCVV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAAS 93
          G+NFGCFFTHSKG+FIYF L TLNFLIFK A+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGAT 92

[Close]

BLAST of Sed0004448 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-23
Identity = 51/91 (56.04%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVV 60
          MLEGKA + +TDM + MK  A++ AS ALD FDV++   +A  IKKEFDR+YGSGWQC+V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKAA 92
          G++FG F TH  G FI+FS+ +L  L+FK +
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGS 91

[Close]

BLAST of Sed0004448 vs. TAIR 10
Match: AT1G52240.1 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-18
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCV 60
          MLEGKA V+++DM  KM++ AMA AS ALDLFDV DC S+A HIKKEFD  YGSGWQCV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59

[Close]

BLAST of Sed0004448 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-14
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 12  DMSEKMKLHAMASASHALDLFDVSDCLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHS 71
           DM   M+ HA   A   LD  +      +A ++KKEFD+ YG  W C+VGS+FG F THS
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  KGSFIYFSLETLNFLIFK 90
            G FIYFS++ L  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

The following BLAST results are available for this feature:

BLAST of Sed0004448 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933771.1	6.7e-41	91.40	dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_022973196.1 dyne...	[more]
XP_038878771.1	2.8e-39	90.32	dynein light chain 1, cytoplasmic-like [Benincasa hispida]	[more]
XP_008462685.1	9.0e-38	89.13	PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]	[more]
XP_004150050.1	1.2e-37	89.13	dynein light chain 1, cytoplasmic [Cucumis sativus] >KAE8652965.1 hypothetical p...	[more]
XP_022144999.1	2.9e-36	87.64	dynein light chain 1, cytoplasmic-like [Momordica charantia]	[more]

BLAST of Sed0004448 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P61285	4.2e-14	42.22	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
P63167	4.2e-14	42.22	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]
P61273	4.2e-14	42.22	Dynein light chain 1, cytoplasmic OS=Macaca fascicularis OX=9541 GN=DYNLL1 PE=3 ...	[more]
P63168	4.2e-14	42.22	Dynein light chain 1, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll1 PE=1 SV=1	[more]
P63169	4.2e-14	42.22	Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus OX=9986 GN=DYNLL1 PE=...	[more]

BLAST of Sed0004448 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I806	3.2e-41	91.40	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111471695 PE=3 SV=1	[more]
A0A6J1EZZ1	3.2e-41	91.40	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111441083 PE=3 SV=1	[more]
A0A1S3CJ38	4.4e-38	89.13	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500988 PE=3 SV=1	[more]
A0A6J1CTX2	1.4e-36	87.64	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111014529 PE=3 SV=1	[more]
A0A1S3UQ79	4.1e-36	80.43	Dynein light chain OS=Vigna radiata var. radiata OX=3916 GN=LOC106767782 PE=3 SV...	[more]

BLAST of Sed0004448 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	1.2e-35	77.17	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	4.9e-34	73.91	Dynein light chain type 1 family protein	[more]
AT4G27360.1	1.0e-23	56.04	Dynein light chain type 1 family protein	[more]
AT1G52240.1	2.9e-18	71.19	RHO guanyl-nucleotide exchange factor 11	[more]
AT5G20110.1	2.0e-14	47.44	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 1.9E-42 score: 157.0
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 e-value: 5.1E-31 score: 106.9
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..92
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 5.5E-31 score: 108.4
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..89
None	No IPR available	PANTHER	PTHR11886:SF71	DYNEIN LIGHT CHAIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004448.1	Sed0004448.1	mRNA
Sed0004448.2	Sed0004448.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding