Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAACAAAAAACAAAACCCCCCCCTTTTTTTTTCTCTTCACTTTTCTTTAAAAAAATCATGTGGCGGCTGATAGCAGCAATCCGCCCCGGCCTCACCGACCGCCACCGCGTCGCCGATGAAACCATGTTCACAACAACCACCTACGCCGCCGCCGATAATCACCACCGCCGTGCCGTCCGCCGCAGCTTCTCCGCCGTCTTCCGCATCATTCGTGCTCCTTTCTCTAATATTCTCTCTTGCTTCGCTCCTCCTCCCTCCCACGGCGGCGCCAACGGCGTTTGGCTCTCCGGCCACCGCTATTTTTCCGATACCAACCACCTTATGGTAAGCGATGGCATGCGCTATGCCATATTCGTGTAAATGACCCTACAAAAATTGTTAAAAATCTTAACTTTAGCTTTTTGTATATTTCATTTCTAG
mRNA sequence
AAAAAACAAAAAACAAAACCCCCCCCTTTTTTTTTCTCTTCACTTTTCTTTAAAAAAATCATGTGGCGGCTGATAGCAGCAATCCGCCCCGGCCTCACCGACCGCCACCGCGTCGCCGATGAAACCATGTTCACAACAACCACCTACGCCGCCGCCGATAATCACCACCGCCGTGCCGTCCGCCGCAGCTTCTCCGCCGTCTTCCGCATCATTCGTGCTCCTTTCTCTAATATTCTCTCTTGCTTCGCTCCTCCTCCCTCCCACGGCGGCGCCAACGGCGTTTGGCTCTCCGGCCACCGCTATTTTTCCGATACCAACCACCTTATGGTAAGCGATGGCATGCGCTATGCCATATTCGTGTAAATGACCCTACAAAAATTGTTAAAAATCTTAACTTTAGCTTTTTGTATATTTCATTTCTAG
Coding sequence (CDS)
ATGTGGCGGCTGATAGCAGCAATCCGCCCCGGCCTCACCGACCGCCACCGCGTCGCCGATGAAACCATGTTCACAACAACCACCTACGCCGCCGCCGATAATCACCACCGCCGTGCCGTCCGCCGCAGCTTCTCCGCCGTCTTCCGCATCATTCGTGCTCCTTTCTCTAATATTCTCTCTTGCTTCGCTCCTCCTCCCTCCCACGGCGGCGCCAACGGCGTTTGGCTCTCCGGCCACCGCTATTTTTCCGATACCAACCACCTTATGGTAAGCGATGGCATGCGCTATGCCATATTCGTGTAA
Protein sequence
MWRLIAAIRPGLTDRHRVADETMFTTTTYAAADNHHRRAVRRSFSAVFRIIRAPFSNILSCFAPPPSHGGANGVWLSGHRYFSDTNHLMVSDGMRYAIFV
Homology
BLAST of Sed0002977 vs. NCBI nr
Match:
XP_022985817.1 (uncharacterized protein LOC111483748 [Cucurbita maxima])
HSP 1 Score: 127.1 bits (318), Expect = 8.5e-26
Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 0
Query: 1 MWRLIAAIRPGL---TDRHRVADETMFTTT---TYAAADNHHRR--AVRRSFSAVFRIIR 60
MWRLIAA+RP L T+ HRVADE+MFTTT YA A++HH R A R+FSAVF IIR
Sbjct: 1 MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHHRRPAAHRTFSAVFSIIR 60
Query: 61 APFSNILSCFAPPPSHGGANGVWLSGHRYF----SDTNHLMVSDGMRYAIFV 101
APFS ILSCFAPPP H A+ WLS YF S+TNHLMVSDGMRYA+ +
Sbjct: 61 APFS-ILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111
BLAST of Sed0002977 vs. NCBI nr
Match:
XP_023513038.1 (uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 72/113 (63.72%), Postives = 82/113 (72.57%), Query Frame = 0
Query: 1 MWRLIAAIRPGL---TDRHRVADETMFTTT---TYAAADNHHRR---AVRRSFSAVFRII 60
MWRLIAA+RP L T+ HRVADE+MFTTT YA A++HH R A R+FSAVF II
Sbjct: 1 MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHHRRRPAAHRTFSAVFSII 60
Query: 61 RAPFSNILSCFAPPPSHGGANGVWLSGHRYF----SDTNHLMVSDGMRYAIFV 101
RAPFS ILSCFAPPP H A+ WLS YF S+TNHLMVSDGMRYA+ +
Sbjct: 61 RAPFS-ILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 112
BLAST of Sed0002977 vs. NCBI nr
Match:
XP_022944204.1 (uncharacterized protein LOC111448722 [Cucurbita moschata])
HSP 1 Score: 125.6 bits (314), Expect = 2.5e-25
Identity = 71/112 (63.39%), Postives = 82/112 (73.21%), Query Frame = 0
Query: 1 MWRLIAAIRPGL---TDRHRVADETMFTTT---TYAAADNHHRR--AVRRSFSAVFRIIR 60
MWRLIAA+RP L T+ HRVADE+MFTTT YA A++HHRR A R+ +AVF IIR
Sbjct: 1 MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHRRRPAAHRTIAAVFSIIR 60
Query: 61 APFSNILSCFAPPPSHGGANGVWLSGHRYF----SDTNHLMVSDGMRYAIFV 101
APFS ILSCFAPPP H A+ WLS YF S+TNHLMVSDGMRYA+ +
Sbjct: 61 APFS-ILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111
BLAST of Sed0002977 vs. NCBI nr
Match:
KAA0053319.1 (uncharacterized protein E6C27_scaffold102G001420 [Cucumis melo var. makuwa])
HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 0
Query: 1 MWRLIAAIRPGL---TDRHRVADETMFTTT----TYAAADNHHRRAVRRSFS-AVFRIIR 60
MWR+ A IRP L T+ HR+ADE+MFTTT TYAAA N+ RR+FS A+F IIR
Sbjct: 1 MWRVFAVIRPTLHNFTNSHRIADESMFTTTDQFPTYAAAANN-----RRTFSTAIFNIIR 60
Query: 61 APFSNILSCFAPPPSHGGANGVWLSGHRYFSDT----NHLMVSDGMRYAIFV 101
APFS ILSCFAPP H + WLSG YF+ T NHLMVSDGMRYAI +
Sbjct: 61 APFS-ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
BLAST of Sed0002977 vs. NCBI nr
Match:
XP_008455967.1 (PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo] >TYK11891.1 uncharacterized protein E5676_scaffold177G00520 [Cucumis melo var. makuwa])
HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 0
Query: 1 MWRLIAAIRPGL---TDRHRVADETMFTTT----TYAAADNHHRRAVRRSFS-AVFRIIR 60
MWR+ A IRP L T+ HR+ADE+MFTTT TYAAA N+ RR+FS A+F IIR
Sbjct: 1 MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANN-----RRTFSTAIFNIIR 60
Query: 61 APFSNILSCFAPPPSHGGANGVWLSGHRYFSDT----NHLMVSDGMRYAIFV 101
APFS ILSCFAPP H + WLSG YF+ T NHLMVSDGMRYAI +
Sbjct: 61 APFS-ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
BLAST of Sed0002977 vs. ExPASy TrEMBL
Match:
A0A6J1J5Y3 (uncharacterized protein LOC111483748 OS=Cucurbita maxima OX=3661 GN=LOC111483748 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 4.1e-26
Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 0
Query: 1 MWRLIAAIRPGL---TDRHRVADETMFTTT---TYAAADNHHRR--AVRRSFSAVFRIIR 60
MWRLIAA+RP L T+ HRVADE+MFTTT YA A++HH R A R+FSAVF IIR
Sbjct: 1 MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHHRRPAAHRTFSAVFSIIR 60
Query: 61 APFSNILSCFAPPPSHGGANGVWLSGHRYF----SDTNHLMVSDGMRYAIFV 101
APFS ILSCFAPPP H A+ WLS YF S+TNHLMVSDGMRYA+ +
Sbjct: 61 APFS-ILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111
BLAST of Sed0002977 vs. ExPASy TrEMBL
Match:
A0A6J1FWB0 (uncharacterized protein LOC111448722 OS=Cucurbita moschata OX=3662 GN=LOC111448722 PE=4 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 71/112 (63.39%), Postives = 82/112 (73.21%), Query Frame = 0
Query: 1 MWRLIAAIRPGL---TDRHRVADETMFTTT---TYAAADNHHRR--AVRRSFSAVFRIIR 60
MWRLIAA+RP L T+ HRVADE+MFTTT YA A++HHRR A R+ +AVF IIR
Sbjct: 1 MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHRRRPAAHRTIAAVFSIIR 60
Query: 61 APFSNILSCFAPPPSHGGANGVWLSGHRYF----SDTNHLMVSDGMRYAIFV 101
APFS ILSCFAPPP H A+ WLS YF S+TNHLMVSDGMRYA+ +
Sbjct: 61 APFS-ILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111
BLAST of Sed0002977 vs. ExPASy TrEMBL
Match:
A0A5D3CJA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00520 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 0
Query: 1 MWRLIAAIRPGL---TDRHRVADETMFTTT----TYAAADNHHRRAVRRSFS-AVFRIIR 60
MWR+ A IRP L T+ HR+ADE+MFTTT TYAAA N+ RR+FS A+F IIR
Sbjct: 1 MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANN-----RRTFSTAIFNIIR 60
Query: 61 APFSNILSCFAPPPSHGGANGVWLSGHRYFSDT----NHLMVSDGMRYAIFV 101
APFS ILSCFAPP H + WLSG YF+ T NHLMVSDGMRYAI +
Sbjct: 61 APFS-ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
BLAST of Sed0002977 vs. ExPASy TrEMBL
Match:
A0A5A7UIL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001420 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 0
Query: 1 MWRLIAAIRPGL---TDRHRVADETMFTTT----TYAAADNHHRRAVRRSFS-AVFRIIR 60
MWR+ A IRP L T+ HR+ADE+MFTTT TYAAA N+ RR+FS A+F IIR
Sbjct: 1 MWRVFAVIRPTLHNFTNSHRIADESMFTTTDQFPTYAAAANN-----RRTFSTAIFNIIR 60
Query: 61 APFSNILSCFAPPPSHGGANGVWLSGHRYFSDT----NHLMVSDGMRYAIFV 101
APFS ILSCFAPP H + WLSG YF+ T NHLMVSDGMRYAI +
Sbjct: 61 APFS-ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
BLAST of Sed0002977 vs. ExPASy TrEMBL
Match:
A0A1S3C290 (uncharacterized protein LOC103496030 OS=Cucumis melo OX=3656 GN=LOC103496030 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 0
Query: 1 MWRLIAAIRPGL---TDRHRVADETMFTTT----TYAAADNHHRRAVRRSFS-AVFRIIR 60
MWR+ A IRP L T+ HR+ADE+MFTTT TYAAA N+ RR+FS A+F IIR
Sbjct: 1 MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANN-----RRTFSTAIFNIIR 60
Query: 61 APFSNILSCFAPPPSHGGANGVWLSGHRYFSDT----NHLMVSDGMRYAIFV 101
APFS ILSCFAPP H + WLSG YF+ T NHLMVSDGMRYAI +
Sbjct: 61 APFS-ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106
BLAST of Sed0002977 vs. TAIR 10
Match:
AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 60.8 bits (146), Expect = 7.0e-10
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 0
Query: 1 MWRLIAAIRPGLTDRH---RVADETMFTTTTYAAADNHHRRAVRRSFSAVFRIIRAPFSN 60
M ++++ +R L + RVAD+T ++T A R F++V I+R PFS
Sbjct: 1 MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSV--IMRFPFS- 60
Query: 61 ILSCFAPPPSHGGANGVWLSG-HRYFSDTNHLMVSDGMRYAIFV 101
I+SCFA P G +G+W+SG + S+ NHLMVSD MRYAI +
Sbjct: 61 IISCFA-VPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100
BLAST of Sed0002977 vs. TAIR 10
Match:
AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 0
Query: 1 MWRLIAAIRPGLTDRH---RVADETMFTTTTYAAADNHHRRAVRRSFSAVFRIIRAPFSN 60
M ++++ +R L + RVADE+ +TT N S I++ P S
Sbjct: 1 MLKMLSILRRNLQNLRKSPRVADESALPSTTV----NGDHGGGNGSNGG---IMKFPLS- 60
Query: 61 ILSCFAPPPSHGGANGVWLSG-HRYFSDTNHLMVSDGMRYAIFV 101
I+SCF+ P A+GVW+SG + S+ NHLMV DGMRYA+ +
Sbjct: 61 IMSCFS-VPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022985817.1 | 8.5e-26 | 64.29 | uncharacterized protein LOC111483748 [Cucurbita maxima] | [more] |
| XP_023513038.1 | 1.1e-25 | 63.72 | uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022944204.1 | 2.5e-25 | 63.39 | uncharacterized protein LOC111448722 [Cucurbita moschata] | [more] |
| KAA0053319.1 | 2.8e-21 | 59.82 | uncharacterized protein E6C27_scaffold102G001420 [Cucumis melo var. makuwa] | [more] |
| XP_008455967.1 | 2.8e-21 | 59.82 | PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo] >TYK11891.1 uncha... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1J5Y3 | 4.1e-26 | 64.29 | uncharacterized protein LOC111483748 OS=Cucurbita maxima OX=3661 GN=LOC111483748... | [more] |
| A0A6J1FWB0 | 1.2e-25 | 63.39 | uncharacterized protein LOC111448722 OS=Cucurbita moschata OX=3662 GN=LOC1114487... | [more] |
| A0A5D3CJA9 | 1.4e-21 | 59.82 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UIL8 | 1.4e-21 | 59.82 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A1S3C290 | 1.4e-21 | 59.82 | uncharacterized protein LOC103496030 OS=Cucumis melo OX=3656 GN=LOC103496030 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G35732.1 | 7.0e-10 | 40.38 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
| AT2G04795.1 | 1.4e-05 | 36.54 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
