Sed0002977 (gene) Chayote v1

Overview


Name	Sed0002977
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protochlorophyllide reductase
Location	LG01: 4089567 .. 4089989 (+)
RNA-Seq Expression	Sed0002977
Synteny	Sed0002977

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAACAAAAAACAAAACCCCCCCCTTTTTTTTTCTCTTCACTTTTCTTTAAAAAAATCATGTGGCGGCTGATAGCAGCAATCCGCCCCGGCCTCACCGACCGCCACCGCGTCGCCGATGAAACCATGTTCACAACAACCACCTACGCCGCCGCCGATAATCACCACCGCCGTGCCGTCCGCCGCAGCTTCTCCGCCGTCTTCCGCATCATTCGTGCTCCTTTCTCTAATATTCTCTCTTGCTTCGCTCCTCCTCCCTCCCACGGCGGCGCCAACGGCGTTTGGCTCTCCGGCCACCGCTATTTTTCCGATACCAACCACCTTATGGTAAGCGATGGCATGCGCTATGCCATATTCGTGTAAATGACCCTACAAAAATTGTTAAAAATCTTAACTTTAGCTTTTTGTATATTTCATTTCTAG

mRNA sequence

AAAAAACAAAAAACAAAACCCCCCCCTTTTTTTTTCTCTTCACTTTTCTTTAAAAAAATCATGTGGCGGCTGATAGCAGCAATCCGCCCCGGCCTCACCGACCGCCACCGCGTCGCCGATGAAACCATGTTCACAACAACCACCTACGCCGCCGCCGATAATCACCACCGCCGTGCCGTCCGCCGCAGCTTCTCCGCCGTCTTCCGCATCATTCGTGCTCCTTTCTCTAATATTCTCTCTTGCTTCGCTCCTCCTCCCTCCCACGGCGGCGCCAACGGCGTTTGGCTCTCCGGCCACCGCTATTTTTCCGATACCAACCACCTTATGGTAAGCGATGGCATGCGCTATGCCATATTCGTGTAAATGACCCTACAAAAATTGTTAAAAATCTTAACTTTAGCTTTTTGTATATTTCATTTCTAG

Coding sequence (CDS)

ATGTGGCGGCTGATAGCAGCAATCCGCCCCGGCCTCACCGACCGCCACCGCGTCGCCGATGAAACCATGTTCACAACAACCACCTACGCCGCCGCCGATAATCACCACCGCCGTGCCGTCCGCCGCAGCTTCTCCGCCGTCTTCCGCATCATTCGTGCTCCTTTCTCTAATATTCTCTCTTGCTTCGCTCCTCCTCCCTCCCACGGCGGCGCCAACGGCGTTTGGCTCTCCGGCCACCGCTATTTTTCCGATACCAACCACCTTATGGTAAGCGATGGCATGCGCTATGCCATATTCGTGTAA

Protein sequence

MWRLIAAIRPGLTDRHRVADETMFTTTTYAAADNHHRRAVRRSFSAVFRIIRAPFSNILSCFAPPPSHGGANGVWLSGHRYFSDTNHLMVSDGMRYAIFV

Homology

[Close]

BLAST of Sed0002977 vs. NCBI nr
Match: XP_022985817.1 (uncharacterized protein LOC111483748 [Cucurbita maxima])

HSP 1 Score: 127.1 bits (318), Expect = 8.5e-26
Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MWRLIAAIRPGL---TDRHRVADETMFTTT---TYAAADNHHRR--AVRRSFSAVFRIIR 60
           MWRLIAA+RP L   T+ HRVADE+MFTTT    YA A++HH R  A  R+FSAVF IIR
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHHRRPAAHRTFSAVFSIIR 60

Query: 61  APFSNILSCFAPPPSHGGANGVWLSGHRYF----SDTNHLMVSDGMRYAIFV 101
           APFS ILSCFAPPP H  A+  WLS   YF    S+TNHLMVSDGMRYA+ +
Sbjct: 61  APFS-ILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Sed0002977 vs. NCBI nr
Match: XP_023513038.1 (uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 72/113 (63.72%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MWRLIAAIRPGL---TDRHRVADETMFTTT---TYAAADNHHRR---AVRRSFSAVFRII 60
           MWRLIAA+RP L   T+ HRVADE+MFTTT    YA A++HH R   A  R+FSAVF II
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHHRRRPAAHRTFSAVFSII 60

Query: 61  RAPFSNILSCFAPPPSHGGANGVWLSGHRYF----SDTNHLMVSDGMRYAIFV 101
           RAPFS ILSCFAPPP H  A+  WLS   YF    S+TNHLMVSDGMRYA+ +
Sbjct: 61  RAPFS-ILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 112

[Close]

BLAST of Sed0002977 vs. NCBI nr
Match: XP_022944204.1 (uncharacterized protein LOC111448722 [Cucurbita moschata])

HSP 1 Score: 125.6 bits (314), Expect = 2.5e-25
Identity = 71/112 (63.39%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MWRLIAAIRPGL---TDRHRVADETMFTTT---TYAAADNHHRR--AVRRSFSAVFRIIR 60
           MWRLIAA+RP L   T+ HRVADE+MFTTT    YA A++HHRR  A  R+ +AVF IIR
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHRRRPAAHRTIAAVFSIIR 60

Query: 61  APFSNILSCFAPPPSHGGANGVWLSGHRYF----SDTNHLMVSDGMRYAIFV 101
           APFS ILSCFAPPP H  A+  WLS   YF    S+TNHLMVSDGMRYA+ +
Sbjct: 61  APFS-ILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Sed0002977 vs. NCBI nr
Match: KAA0053319.1 (uncharacterized protein E6C27_scaffold102G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 1   MWRLIAAIRPGL---TDRHRVADETMFTTT----TYAAADNHHRRAVRRSFS-AVFRIIR 60
           MWR+ A IRP L   T+ HR+ADE+MFTTT    TYAAA N+     RR+FS A+F IIR
Sbjct: 1   MWRVFAVIRPTLHNFTNSHRIADESMFTTTDQFPTYAAAANN-----RRTFSTAIFNIIR 60

Query: 61  APFSNILSCFAPPPSHGGANGVWLSGHRYFSDT----NHLMVSDGMRYAIFV 101
           APFS ILSCFAPP  H   +  WLSG  YF+ T    NHLMVSDGMRYAI +
Sbjct: 61  APFS-ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Sed0002977 vs. NCBI nr
Match: XP_008455967.1 (PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo] >TYK11891.1 uncharacterized protein E5676_scaffold177G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 1   MWRLIAAIRPGL---TDRHRVADETMFTTT----TYAAADNHHRRAVRRSFS-AVFRIIR 60
           MWR+ A IRP L   T+ HR+ADE+MFTTT    TYAAA N+     RR+FS A+F IIR
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANN-----RRTFSTAIFNIIR 60

Query: 61  APFSNILSCFAPPPSHGGANGVWLSGHRYFSDT----NHLMVSDGMRYAIFV 101
           APFS ILSCFAPP  H   +  WLSG  YF+ T    NHLMVSDGMRYAI +
Sbjct: 61  APFS-ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Sed0002977 vs. ExPASy TrEMBL
Match: A0A6J1J5Y3 (uncharacterized protein LOC111483748 OS=Cucurbita maxima OX=3661 GN=LOC111483748 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.1e-26
Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MWRLIAAIRPGL---TDRHRVADETMFTTT---TYAAADNHHRR--AVRRSFSAVFRIIR 60
           MWRLIAA+RP L   T+ HRVADE+MFTTT    YA A++HH R  A  R+FSAVF IIR
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHHRRPAAHRTFSAVFSIIR 60

Query: 61  APFSNILSCFAPPPSHGGANGVWLSGHRYF----SDTNHLMVSDGMRYAIFV 101
           APFS ILSCFAPPP H  A+  WLS   YF    S+TNHLMVSDGMRYA+ +
Sbjct: 61  APFS-ILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Sed0002977 vs. ExPASy TrEMBL
Match: A0A6J1FWB0 (uncharacterized protein LOC111448722 OS=Cucurbita moschata OX=3662 GN=LOC111448722 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 71/112 (63.39%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MWRLIAAIRPGL---TDRHRVADETMFTTT---TYAAADNHHRR--AVRRSFSAVFRIIR 60
           MWRLIAA+RP L   T+ HRVADE+MFTTT    YA A++HHRR  A  R+ +AVF IIR
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTEFPIYAVANHHHRRRPAAHRTIAAVFSIIR 60

Query: 61  APFSNILSCFAPPPSHGGANGVWLSGHRYF----SDTNHLMVSDGMRYAIFV 101
           APFS ILSCFAPPP H  A+  WLS   YF    S+TNHLMVSDGMRYA+ +
Sbjct: 61  APFS-ILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Sed0002977 vs. ExPASy TrEMBL
Match: A0A5D3CJA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00520 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 1   MWRLIAAIRPGL---TDRHRVADETMFTTT----TYAAADNHHRRAVRRSFS-AVFRIIR 60
           MWR+ A IRP L   T+ HR+ADE+MFTTT    TYAAA N+     RR+FS A+F IIR
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANN-----RRTFSTAIFNIIR 60

Query: 61  APFSNILSCFAPPPSHGGANGVWLSGHRYFSDT----NHLMVSDGMRYAIFV 101
           APFS ILSCFAPP  H   +  WLSG  YF+ T    NHLMVSDGMRYAI +
Sbjct: 61  APFS-ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Sed0002977 vs. ExPASy TrEMBL
Match: A0A5A7UIL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001420 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 1   MWRLIAAIRPGL---TDRHRVADETMFTTT----TYAAADNHHRRAVRRSFS-AVFRIIR 60
           MWR+ A IRP L   T+ HR+ADE+MFTTT    TYAAA N+     RR+FS A+F IIR
Sbjct: 1   MWRVFAVIRPTLHNFTNSHRIADESMFTTTDQFPTYAAAANN-----RRTFSTAIFNIIR 60

Query: 61  APFSNILSCFAPPPSHGGANGVWLSGHRYFSDT----NHLMVSDGMRYAIFV 101
           APFS ILSCFAPP  H   +  WLSG  YF+ T    NHLMVSDGMRYAI +
Sbjct: 61  APFS-ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Sed0002977 vs. ExPASy TrEMBL
Match: A0A1S3C290 (uncharacterized protein LOC103496030 OS=Cucumis melo OX=3656 GN=LOC103496030 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 1   MWRLIAAIRPGL---TDRHRVADETMFTTT----TYAAADNHHRRAVRRSFS-AVFRIIR 60
           MWR+ A IRP L   T+ HR+ADE+MFTTT    TYAAA N+     RR+FS A+F IIR
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANN-----RRTFSTAIFNIIR 60

Query: 61  APFSNILSCFAPPPSHGGANGVWLSGHRYFSDT----NHLMVSDGMRYAIFV 101
           APFS ILSCFAPP  H   +  WLSG  YF+ T    NHLMVSDGMRYAI +
Sbjct: 61  APFS-ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Sed0002977 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 7.0e-10
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 1   MWRLIAAIRPGLTDRH---RVADETMFTTTTYAAADNHHRRAVRRSFSAVFRIIRAPFSN 60
           M ++++ +R  L +     RVAD+T   ++T  A         R  F++V  I+R PFS 
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSV--IMRFPFS- 60

Query: 61  ILSCFAPPPSHGGANGVWLSG-HRYFSDTNHLMVSDGMRYAIFV 101
           I+SCFA  P   G +G+W+SG +   S+ NHLMVSD MRYAI +
Sbjct: 61  IISCFA-VPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of Sed0002977 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 1   MWRLIAAIRPGLTDRH---RVADETMFTTTTYAAADNHHRRAVRRSFSAVFRIIRAPFSN 60
           M ++++ +R  L +     RVADE+   +TT     N        S      I++ P S 
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTTV----NGDHGGGNGSNGG---IMKFPLS- 60

Query: 61  ILSCFAPPPSHGGANGVWLSG-HRYFSDTNHLMVSDGMRYAIFV 101
           I+SCF+  P    A+GVW+SG +   S+ NHLMV DGMRYA+ +
Sbjct: 61  IMSCFS-VPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:

BLAST of Sed0002977 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985817.1	8.5e-26	64.29	uncharacterized protein LOC111483748 [Cucurbita maxima]	[more]
XP_023513038.1	1.1e-25	63.72	uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo]	[more]
XP_022944204.1	2.5e-25	63.39	uncharacterized protein LOC111448722 [Cucurbita moschata]	[more]
KAA0053319.1	2.8e-21	59.82	uncharacterized protein E6C27_scaffold102G001420 [Cucumis melo var. makuwa]	[more]
XP_008455967.1	2.8e-21	59.82	PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo] >TYK11891.1 uncha...	[more]

BLAST of Sed0002977 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002977 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J5Y3	4.1e-26	64.29	uncharacterized protein LOC111483748 OS=Cucurbita maxima OX=3661 GN=LOC111483748...	[more]
A0A6J1FWB0	1.2e-25	63.39	uncharacterized protein LOC111448722 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A5D3CJA9	1.4e-21	59.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UIL8	1.4e-21	59.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3C290	1.4e-21	59.82	uncharacterized protein LOC103496030 OS=Cucumis melo OX=3656 GN=LOC103496030 PE=...	[more]

BLAST of Sed0002977 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35732.1	7.0e-10	40.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G04795.1	1.4e-05	36.54	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48165	BNAC03G44900D PROTEIN	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002977.1	Sed0002977.1	mRNA