Sed0002761 (gene) Chayote v1

Overview


Name	Sed0002761
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG12: 30237562 .. 30239778 (-)
RNA-Seq Expression	Sed0002761
Synteny	Sed0002761

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTATTTTCTTTTCTAGTCTGTGTAAAATAGCGAGCGAAGCAGAAGAGTTTCCGTTATCTAATTCTCTCTCTCTCTCTCTCTCTCCCTCGAAGATTTCTCTCTCAAAAAAAAAATATCCACACAAATTAGGGTTTCTTCGCGACCTTCGATCCTTCATTTCGATTTCAACTCTTCCATCATGGTTACTGATCCGATCACCAATGCTTCAATTTCTTTGGCTCCAAACGCTCGGGATTTGCCCTTGACCAAGAAGAAGAGGGTGAGCAATCTCTCTCTCTCTTTCTTTCTGTTCAGATGTAAATCTTCTCATTTTTTGTCTTTTGATTTTGATTTTGATTTTGTTTGATTGTTGATTTATTTATTTATTTCTCTCTCGTTTGGTATGGATTTCAGGTTAGGTATTCCAAATTGAAGCAGTCAAAGCTTGATGTTCGTCGGGAACAATGGCTTTCTCGAGGTATTTTTTGTAATTTTTTTGATTTTATGTGTTTATGAGACGGGATTTATGCATGTGATGTGAGAATTGTTTTTGATTGATTGGGGTTTACGAGTAATAGGTGCTGTGAAGGACAAAAAATGGAACGAAGAAGATAATCGCCTTGATTCAGTGGTTGTTAAAACGGGGGAAGGTGTTAATCTTTCCTCTAAGGAAATAAATTTGAGGGAAATTGGAGAAGAGAACGGCAGATCGGTCCATGGACATAGCGATTTTTCGGAGTCGCCGTCGAATAGCCCCCCTAGTCTTGGCAGTAGTATCTTGGGTGGCAATGATTCGGTTCCTCATTTTACTGGGAGTAGCAGTAGTAGTAGCTGCCATAGCAGTTCTAGTGGGTGTCGGTCAGGGAGTGTTACGGAGGAGGAGGAGGAAGAAGAAGAAAGAAATGATGACTGCTTGGATGATTGGGAAGCTTTTGCGGATGCGCTAGCCGCCACGGACAAGCAACATGACCAATGTTCTGAGTCCTCCCCTCGGGATAATGTCGTTTCTCAGTTGGATTCTGGTGGAGACAGCAGAAATGAGCTCGGCGAAGGAAATGGCGACTCGAGTATTGAGCAAGGAATCGTGCAGAGGGCTTTTATGAATTGCCATGCATGGAGGCCAGATGATGCCTTCCGTCCGCAGAGCTTGCCCACGTTATCGAAGCAGCTTAGTTTTCCGAATGCAGACCGGCGTTTTGGATGTGGAGGCATCTCTTGGGCCTGTGGTGCAGTTATGCCTGTGCCTACATCTTGCCCAATTTGCTTTGAAGACTTGGACCTTACGGACTCTAGTTTTTTACCTTGTTTTTGTGGATTCCGGCTTTGCCTTTTCTGTCATAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCCATATGATCGTGATCCTGCTGATAGTAAGACAAATGTACATGATGGCAGCCCAAAGTTCCCAATGGCTCGTTCTCGTAGCATGATTTCGAGGTCTTAGGCAGTGTTCAGTCTCTGTGAGTTAATGTACCTCTGGTCTCAATTTTTAATTTTGTTTGGGTATTATGTCAGTCTTGGGCTCTGCTTTTCATAGTAATAGACTTGGCATTTGGGTGTTGAAGTATGGTTATGAGATTGAGAACCTTTAAACTTATCTGCTTCGTTCATGAGTGTGGTTCTTATCTTATGGTACATCTGCCAATGTAGAGGACTTATTTCCTACCTTATATGTGAATAGACAAGGTGGTATAGTAATGAATACATGAAATAATGATACACATTTGTTTTATTTTCCACATTTTAAATAATTTTCTCCTTAGTCTACTGGTTTTATGGGATATAGTGTTGTAATTGGCTACTTGTTTTGTTTTGTCCCCAAGGGATGGTGCAGTGGTTGAAGATTTGGGCTTTGAGGATATACTCCCTTCAAGGTCCTAGGTTCGAGACTCACCTATGACATTACTCTTTAGATGTTTCTAGTGCCTGACCTAGAGACGGACGTGGTTATCCTTGTTTATAAATAAAATTGGCTACTTGTTTTATAGCATGTGACAAGACTTCCAGGAGTATATATTCACGCACGTTAAAATGAAATTTGTAAATATTTGTAGTAACTTGTACGTCACAGAACTAATGTTTTTGCCGTTCATAGCCAGCACCATCAGTTGAATTTCTGAGATCAGTCAGAGGTAAAGCTTAACGCTTGTTTTGCTTTTTTTTTTATTTTTTTTATTTTGACATCTGTAAGTATCTG

mRNA sequence

GTTTATTTTCTTTTCTAGTCTGTGTAAAATAGCGAGCGAAGCAGAAGAGTTTCCGTTATCTAATTCTCTCTCTCTCTCTCTCTCTCCCTCGAAGATTTCTCTCTCAAAAAAAAAATATCCACACAAATTAGGGTTTCTTCGCGACCTTCGATCCTTCATTTCGATTTCAACTCTTCCATCATGGTTACTGATCCGATCACCAATGCTTCAATTTCTTTGGCTCCAAACGCTCGGGATTTGCCCTTGACCAAGAAGAAGAGGGTTAGGTATTCCAAATTGAAGCAGTCAAAGCTTGATGTTCGTCGGGAACAATGGCTTTCTCGAGGTGCTGTGAAGGACAAAAAATGGAACGAAGAAGATAATCGCCTTGATTCAGTGGTTGTTAAAACGGGGGAAGGTGTTAATCTTTCCTCTAAGGAAATAAATTTGAGGGAAATTGGAGAAGAGAACGGCAGATCGGTCCATGGACATAGCGATTTTTCGGAGTCGCCGTCGAATAGCCCCCCTAGTCTTGGCAGTAGTATCTTGGGTGGCAATGATTCGGTTCCTCATTTTACTGGGAGTAGCAGTAGTAGTAGCTGCCATAGCAGTTCTAGTGGGTGTCGGTCAGGGAGTGTTACGGAGGAGGAGGAGGAAGAAGAAGAAAGAAATGATGACTGCTTGGATGATTGGGAAGCTTTTGCGGATGCGCTAGCCGCCACGGACAAGCAACATGACCAATGTTCTGAGTCCTCCCCTCGGGATAATGTCGTTTCTCAGTTGGATTCTGGTGGAGACAGCAGAAATGAGCTCGGCGAAGGAAATGGCGACTCGAGTATTGAGCAAGGAATCGTGCAGAGGGCTTTTATGAATTGCCATGCATGGAGGCCAGATGATGCCTTCCGTCCGCAGAGCTTGCCCACGTTATCGAAGCAGCTTAGTTTTCCGAATGCAGACCGGCGTTTTGGATGTGGAGGCATCTCTTGGGCCTGTGGTGCAGTTATGCCTGTGCCTACATCTTGCCCAATTTGCTTTGAAGACTTGGACCTTACGGACTCTAGTTTTTTACCTTGTTTTTGTGGATTCCGGCTTTGCCTTTTCTGTCATAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCCATATGATCGTGATCCTGCTGATAGTAAGACAAATGTACATGATGGCAGCCCAAAGTTCCCAATGGCTCGTTCTCGTAGCATGATTTCGAGGTCTTAGGCAGTGTTCAGTCTCTGTGAGTTAATGTACCTCTGGTCTCAATTTTTAATTTTGTTTGGGTATTATGTCAGTCTTGGGCTCTGCTTTTCATAGTAATAGACTTGGCATTTGGGTGTTGAAGTATGGTTATGAGATTGAGAACCTTTAAACTTATCTGCTTCGTTCATGAGTGTGGTTCTTATCTTATGGTACATCTGCCAATGTAGAGGACTTATTTCCTACCTTATATGTGAATAGACAAGGTGGTATAGTAATGAATACATGAAATAATGATACACATTTGTTTTATTTTCCACATTTTAAATAATTTTCTCCTTAGTCTACTGGTTTTATGGGATATAGTGTTGTAATTGGCTACTTGTTTTGTTTTGTCCCCAAGGGATGGTGCAGTGGTTGAAGATTTGGGCTTTGAGGATATACTCCCTTCAAGGTCCTAGGTTCGAGACTCACCTATGACATTACTCTTTAGATGTTTCTAGTGCCTGACCTAGAGACGGACGTGGTTATCCTTGTTTATAAATAAAATTGGCTACTTGTTTTATAGCATGTGACAAGACTTCCAGGAGTATATATTCACGCACGTTAAAATGAAATTTGTAAATATTTGTAGTAACTTGTACGTCACAGAACTAATGTTTTTGCCGTTCATAGCCAGCACCATCAGTTGAATTTCTGAGATCAGTCAGAGGTAAAGCTTAACGCTTGTTTTGCTTTTTTTTTTATTTTTTTTATTTTGACATCTGTAAGTATCTG

Coding sequence (CDS)

ATGGTTACTGATCCGATCACCAATGCTTCAATTTCTTTGGCTCCAAACGCTCGGGATTTGCCCTTGACCAAGAAGAAGAGGGTTAGGTATTCCAAATTGAAGCAGTCAAAGCTTGATGTTCGTCGGGAACAATGGCTTTCTCGAGGTGCTGTGAAGGACAAAAAATGGAACGAAGAAGATAATCGCCTTGATTCAGTGGTTGTTAAAACGGGGGAAGGTGTTAATCTTTCCTCTAAGGAAATAAATTTGAGGGAAATTGGAGAAGAGAACGGCAGATCGGTCCATGGACATAGCGATTTTTCGGAGTCGCCGTCGAATAGCCCCCCTAGTCTTGGCAGTAGTATCTTGGGTGGCAATGATTCGGTTCCTCATTTTACTGGGAGTAGCAGTAGTAGTAGCTGCCATAGCAGTTCTAGTGGGTGTCGGTCAGGGAGTGTTACGGAGGAGGAGGAGGAAGAAGAAGAAAGAAATGATGACTGCTTGGATGATTGGGAAGCTTTTGCGGATGCGCTAGCCGCCACGGACAAGCAACATGACCAATGTTCTGAGTCCTCCCCTCGGGATAATGTCGTTTCTCAGTTGGATTCTGGTGGAGACAGCAGAAATGAGCTCGGCGAAGGAAATGGCGACTCGAGTATTGAGCAAGGAATCGTGCAGAGGGCTTTTATGAATTGCCATGCATGGAGGCCAGATGATGCCTTCCGTCCGCAGAGCTTGCCCACGTTATCGAAGCAGCTTAGTTTTCCGAATGCAGACCGGCGTTTTGGATGTGGAGGCATCTCTTGGGCCTGTGGTGCAGTTATGCCTGTGCCTACATCTTGCCCAATTTGCTTTGAAGACTTGGACCTTACGGACTCTAGTTTTTTACCTTGTTTTTGTGGATTCCGGCTTTGCCTTTTCTGTCATAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCCATATGATCGTGATCCTGCTGATAGTAAGACAAATGTACATGATGGCAGCCCAAAGTTCCCAATGGCTCGTTCTCGTAGCATGATTTCGAGGTCTTAG

Protein sequence

MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEEDNRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGNDSVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQCSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQGIVQRAFMNCHAWRPDDAFRPQSLPTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISRS

Homology

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BLAST of Sed0002761 vs. NCBI nr
Match: XP_004138290.2 (uncharacterized protein LOC101211244 [Cucumis sativus] >KAE8652409.1 hypothetical protein Csa_013954 [Cucumis sativus])

HSP 1 Score: 589.0 bits (1517), Expect = 2.8e-164
Identity = 300/350 (85.71%), Postives = 320/350 (91.43%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           MVTD I NASISLAPNARDLPL KKKRVR SKLKQSKLDVRREQWLSRGAVK+KKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           NRLDSVV+KT +  +LSS++IN+REIGEEN RSVH HSD+S+SPSNSPPSLGSSILGGND
Sbjct: 61  NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S PHFTGSSSSSSC SSSSGCRSGS+T EEEEEEE +DDCLDDWEA ADALAATDKQHDQ
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSIT-EEEEEEEGDDDCLDDWEAIADALAATDKQHDQ 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG-IVQRAFMNCHAWRPDDAFRPQSL 240
           CSESSPR NV+SQLDS GD RNELG G+GDSS+E+G IVQRA MNC AWRPDDAFRPQSL
Sbjct: 181 CSESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           PTLSKQLS P  DRRFGCGG+SWACG V+PVPTSCPICFEDLDLTDSSFLPCFCGFRLCL
Sbjct: 241 PTLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISRS 350
           FCHKRILEEDGRCPGCRKPYDRDPAD++TNV  GSP  P+ARS SMISRS
Sbjct: 301 FCHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 349

[Close]

BLAST of Sed0002761 vs. NCBI nr
Match: XP_008453149.1 (PREDICTED: uncharacterized protein LOC103493947 [Cucumis melo])

HSP 1 Score: 587.0 bits (1512), Expect = 1.0e-163
Identity = 299/350 (85.43%), Postives = 319/350 (91.14%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           MVTD I NASISLAPNARDLPL KKKRVR SKLKQSKLDVRREQWLSRGAVK+KKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           NRLDSVV+KT +  NLSS++IN+REIGEEN RSVH HSD+S+SPSNSPPSLGSSILGGND
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S PHFTGSSSSSSC SSSSGCRSGS+T EEEEEEE +DDCLDDWEA ADALAATDKQ DQ
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSIT-EEEEEEEGDDDCLDDWEAIADALAATDKQRDQ 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG-IVQRAFMNCHAWRPDDAFRPQSL 240
           CSESSPR NVVSQLDS GD RNELG G+GDS++E+G IVQRA MNC AWRPDDAFRPQSL
Sbjct: 181 CSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           PTLSKQLS PN DRRFGCGG+ WACG V+PVPTSCPICFEDLDLTDSSFLPCFCGFRLCL
Sbjct: 241 PTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISRS 350
           FCHKRILEEDGRCPGCRKPYDRDPAD++TN+  GSP  P+ARS SMISRS
Sbjct: 301 FCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISRS 349

[Close]

BLAST of Sed0002761 vs. NCBI nr
Match: XP_038878939.1 (uncharacterized protein LOC120071026 [Benincasa hispida])

HSP 1 Score: 586.3 bits (1510), Expect = 1.8e-163
Identity = 301/351 (85.75%), Postives = 318/351 (90.60%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           MVTD I NASISLAPNARDLPL KKKRV+ SKLKQSKLDVRREQWLSRGAVK+KKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVKNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           NRLDSVV+KT E  NLSSK+IN+R+IGEEN RSVH HSDFS+SPSNSPPSLGSSILGGND
Sbjct: 61  NRLDSVVIKTREDDNLSSKKINMRDIGEENDRSVHRHSDFSDSPSNSPPSLGSSILGGND 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S PHFTGSSSSSSC SSSSGCRSGS+T EEEEEEE +DDCLDDWEA ADALAATDKQHDQ
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSIT-EEEEEEEGDDDCLDDWEAIADALAATDKQHDQ 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG-IVQRAFMNCHAWRPDDAFRPQSL 240
           CSESSPR NVVSQLDS GDSRNELG G+GDS +++G IVQRA MNC AWRPDDAFRPQSL
Sbjct: 181 CSESSPRGNVVSQLDSCGDSRNELGVGDGDSGVDRGRIVQRASMNCRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSFPNADRRFGC-GGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLC 300
           P LSKQLS PN DRRFGC GGI W CG V+PVPTSCPICFEDLDLTDSSFLPCFCGFRLC
Sbjct: 241 PMLSKQLSLPNTDRRFGCGGGIPWGCGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLC 300

Query: 301 LFCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISRS 350
           LFCHKRI+EEDGRCPGCRKPYDRDPADS+TNV  GSP F +ARS SMISRS
Sbjct: 301 LFCHKRIIEEDGRCPGCRKPYDRDPADSETNVQGGSPMFALARSCSMISRS 350

[Close]

BLAST of Sed0002761 vs. NCBI nr
Match: KAA0057903.1 (suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 585.9 bits (1509), Expect = 2.3e-163
Identity = 298/349 (85.39%), Postives = 318/349 (91.12%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           MVTD I NASISLAPNARDLPL KKKRVR SKLKQSKLDVRREQWLSRGAVK+KKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           NRLDSVV+KT +  NLSS++IN+REIGEEN RSVH HSD+S+SPSNSPPSLGSSILGGND
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S PHFTGSSSSSSC SSSSGCRSGS+T EEEEEEE +DDCLDDWEA ADALAATDKQ DQ
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSIT-EEEEEEEGDDDCLDDWEAIADALAATDKQRDQ 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG-IVQRAFMNCHAWRPDDAFRPQSL 240
           CSESSPR NVVSQLDS GD RNELG G+GDS++E+G IVQRA MNC AWRPDDAFRPQSL
Sbjct: 181 CSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           PTLSKQLS PN DRRFGCGG+ WACG V+PVPTSCPICFEDLDLTDSSFLPCFCGFRLCL
Sbjct: 241 PTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISR 349
           FCHKRILEEDGRCPGCRKPYDRDPAD++TN+  GSP  P+ARS SMISR
Sbjct: 301 FCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISR 348

[Close]

BLAST of Sed0002761 vs. NCBI nr
Match: TYJ98591.1 (suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 583.9 bits (1504), Expect = 8.9e-163
Identity = 297/348 (85.34%), Postives = 317/348 (91.09%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           MVTD I NASISLAPNARDLPL KKKRVR SKLKQSKLDVRREQWLSRGAVK+KKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           NRLDSVV+KT +  NLSS++IN+REIGEEN RSVH HSD+S+SPSNSPPSLGSSILGGND
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S PHFTGSSSSSSC SSSSGCRSGS+T EEEEEEE +DDCLDDWEA ADALAATDKQ DQ
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSIT-EEEEEEEGDDDCLDDWEAIADALAATDKQRDQ 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG-IVQRAFMNCHAWRPDDAFRPQSL 240
           CSESSPR NVVSQLDS GD RNELG G+GDS++E+G IVQRA MNC AWRPDDAFRPQSL
Sbjct: 181 CSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           PTLSKQLS PN DRRFGCGG+ WACG V+PVPTSCPICFEDLDLTDSSFLPCFCGFRLCL
Sbjct: 241 PTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMIS 348
           FCHKRILEEDGRCPGCRKPYDRDPAD++TN+  GSP  P+ARS SMIS
Sbjct: 301 FCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMIS 347

[Close]

BLAST of Sed0002761 vs. ExPASy Swiss-Prot
Match: O95628 (CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3)

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-12
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 271 PTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRI-LEEDGRCPGCRKPYDRDPA 325
           P  CP+C E L++ D +F PC CG+++C FC  RI  +E+G CP CRKPY  DPA
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

[Close]

BLAST of Sed0002761 vs. ExPASy Swiss-Prot
Match: Q8BT14 (CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-12
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 271 PTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRI-LEEDGRCPGCRKPYDRDPA 325
           P  CP+C E L++ D +F PC CG+++C FC  RI  +E+G CP CRKPY  DPA
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

[Close]

BLAST of Sed0002761 vs. ExPASy Swiss-Prot
Match: P34909 (General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MOT2 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.8e-10
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 274 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRIL---EEDGRCPGCRKPYD 321
           CP+C E +D+TD +F PC CG+++C FC+  I    E +GRCP CR+ YD
Sbjct: 33  CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYD 82

[Close]

BLAST of Sed0002761 vs. ExPASy Swiss-Prot
Match: Q09818 (Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-09
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 274 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEE-DGRCPGCRKPYDRD 323
           CP+C E++D++D +F PC CG+R+C FC   I E+ +GRCP CR+ Y  +
Sbjct: 18  CPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLYTEE 67

[Close]

BLAST of Sed0002761 vs. ExPASy TrEMBL
Match: A0A1S3BVJ1 (uncharacterized protein LOC103493947 OS=Cucumis melo OX=3656 GN=LOC103493947 PE=4 SV=1)

HSP 1 Score: 587.0 bits (1512), Expect = 5.1e-164
Identity = 299/350 (85.43%), Postives = 319/350 (91.14%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           MVTD I NASISLAPNARDLPL KKKRVR SKLKQSKLDVRREQWLSRGAVK+KKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           NRLDSVV+KT +  NLSS++IN+REIGEEN RSVH HSD+S+SPSNSPPSLGSSILGGND
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S PHFTGSSSSSSC SSSSGCRSGS+T EEEEEEE +DDCLDDWEA ADALAATDKQ DQ
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSIT-EEEEEEEGDDDCLDDWEAIADALAATDKQRDQ 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG-IVQRAFMNCHAWRPDDAFRPQSL 240
           CSESSPR NVVSQLDS GD RNELG G+GDS++E+G IVQRA MNC AWRPDDAFRPQSL
Sbjct: 181 CSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           PTLSKQLS PN DRRFGCGG+ WACG V+PVPTSCPICFEDLDLTDSSFLPCFCGFRLCL
Sbjct: 241 PTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISRS 350
           FCHKRILEEDGRCPGCRKPYDRDPAD++TN+  GSP  P+ARS SMISRS
Sbjct: 301 FCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISRS 349

[Close]

BLAST of Sed0002761 vs. ExPASy TrEMBL
Match: A0A5A7UPV5 (Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002030 PE=4 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 1.1e-163
Identity = 298/349 (85.39%), Postives = 318/349 (91.12%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           MVTD I NASISLAPNARDLPL KKKRVR SKLKQSKLDVRREQWLSRGAVK+KKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           NRLDSVV+KT +  NLSS++IN+REIGEEN RSVH HSD+S+SPSNSPPSLGSSILGGND
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S PHFTGSSSSSSC SSSSGCRSGS+T EEEEEEE +DDCLDDWEA ADALAATDKQ DQ
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSIT-EEEEEEEGDDDCLDDWEAIADALAATDKQRDQ 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG-IVQRAFMNCHAWRPDDAFRPQSL 240
           CSESSPR NVVSQLDS GD RNELG G+GDS++E+G IVQRA MNC AWRPDDAFRPQSL
Sbjct: 181 CSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           PTLSKQLS PN DRRFGCGG+ WACG V+PVPTSCPICFEDLDLTDSSFLPCFCGFRLCL
Sbjct: 241 PTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISR 349
           FCHKRILEEDGRCPGCRKPYDRDPAD++TN+  GSP  P+ARS SMISR
Sbjct: 301 FCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISR 348

[Close]

BLAST of Sed0002761 vs. ExPASy TrEMBL
Match: A0A5D3BIS7 (Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002110 PE=4 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 4.3e-163
Identity = 297/348 (85.34%), Postives = 317/348 (91.09%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           MVTD I NASISLAPNARDLPL KKKRVR SKLKQSKLDVRREQWLSRGAVK+KKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           NRLDSVV+KT +  NLSS++IN+REIGEEN RSVH HSD+S+SPSNSPPSLGSSILGGND
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S PHFTGSSSSSSC SSSSGCRSGS+T EEEEEEE +DDCLDDWEA ADALAATDKQ DQ
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSIT-EEEEEEEGDDDCLDDWEAIADALAATDKQRDQ 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG-IVQRAFMNCHAWRPDDAFRPQSL 240
           CSESSPR NVVSQLDS GD RNELG G+GDS++E+G IVQRA MNC AWRPDDAFRPQSL
Sbjct: 181 CSESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           PTLSKQLS PN DRRFGCGG+ WACG V+PVPTSCPICFEDLDLTDSSFLPCFCGFRLCL
Sbjct: 241 PTLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMIS 348
           FCHKRILEEDGRCPGCRKPYDRDPAD++TN+  GSP  P+ARS SMIS
Sbjct: 301 FCHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMIS 347

[Close]

BLAST of Sed0002761 vs. ExPASy TrEMBL
Match: A0A6J1C357 (uncharacterized protein LOC111007016 OS=Momordica charantia OX=3673 GN=LOC111007016 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 1.0e-156
Identity = 291/350 (83.14%), Postives = 309/350 (88.29%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           MVTD ITNASISLAP+ARDLPL KKKRV+ SKLKQSKLDVRREQWLSRGAVK+KKWNEED
Sbjct: 1   MVTDSITNASISLAPSARDLPLPKKKRVKNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           NRLDSVV+KT +  NLSSK+IN+REIG +NG SVH  SDFSESPSNSPPSL SSILGGND
Sbjct: 61  NRLDSVVIKTSKDDNLSSKKINMREIGGDNGGSVHHDSDFSESPSNSPPSLASSILGGND 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S PHFTGSSSSSSC SSSSGCRSGS+TEEE +     DD LDDWEA ADALAATDKQHDQ
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEGD-----DDGLDDWEAIADALAATDKQHDQ 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG-IVQRAFMNCHAWRPDDAFRPQSL 240
           CSESSPR + VSQLDS GDSRNELG G+GDS +E G I QRA M+C AWRPDDAFRPQSL
Sbjct: 181 CSESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECGRIAQRAPMSCRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           PTLSKQLS PN DRR+GCGGI WACG VM VPTSCPICFEDLDLTDSSFLPCFCGFRLCL
Sbjct: 241 PTLSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISRS 350
           FCHKRILEEDGRCPGCRKPY+ DPADS+TNVH GSP  P+ARS SMISRS
Sbjct: 301 FCHKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPLARSCSMISRS 345

[Close]

BLAST of Sed0002761 vs. ExPASy TrEMBL
Match: A0A6J1F4L8 (uncharacterized protein LOC111440610 OS=Cucurbita moschata OX=3662 GN=LOC111440610 PE=4 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 1.3e-156
Identity = 296/350 (84.57%), Postives = 310/350 (88.57%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           MVTD ITNAS+SLAPNA DLPL KKKRVRYSKLKQSKLDVRREQWLSRGAVK+KKWN ED
Sbjct: 1   MVTDSITNASVSLAPNAGDLPLPKKKRVRYSKLKQSKLDVRREQWLSRGAVKNKKWN-ED 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           NRLDSVVVKT +  +LSS +IN REIGE+N RSVH HSDFSESPSNSPPSLGSSIL GND
Sbjct: 61  NRLDSVVVKTRKDDDLSSNKINSREIGEQNNRSVHHHSDFSESPSNSPPSLGSSILCGND 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           SVPHFTGSSSSSSC SSSSGC+SGS+TEEEE +    DDCLDDWEA ADALAATDKQHDQ
Sbjct: 121 SVPHFTGSSSSSSCRSSSSGCQSGSITEEEEGD----DDCLDDWEAIADALAATDKQHDQ 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG-IVQRAFMNCHAWRPDDAFRPQSL 240
           CSESSP  NVVSQLDS GDSRNELG G+GDSSIE G IVQRA MNC AWRPDDAFRPQSL
Sbjct: 181 CSESSPSGNVVSQLDSCGDSRNELGVGDGDSSIELGKIVQRASMNCRAWRPDDAFRPQSL 240

Query: 241 PTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           PTLSKQLS PNADR FG GGIS ACG VMPVPTSCPICFEDLD TDSSFLPCFCGFRLCL
Sbjct: 241 PTLSKQLSLPNADRHFGYGGISLACGGVMPVPTSCPICFEDLDFTDSSFLPCFCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISRS 350
           FCHKRILEEDGRCPGCRKPYDR+  D++TNV  GSP F +ARS SMISRS
Sbjct: 301 FCHKRILEEDGRCPGCRKPYDREHVDNETNVDGGSPTFLLARSYSMISRS 345

[Close]

BLAST of Sed0002761 vs. TAIR 10
Match: AT3G48070.1 (RING/U-box superfamily protein )

HSP 1 Score: 239.6 bits (610), Expect = 3.8e-63
Identity = 160/351 (45.58%), Postives = 206/351 (58.69%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           M++D ITNAS + AP ARD    KK+  R +KLKQSKL +RREQWLS+ A+ +K   EE 
Sbjct: 1   MISDSITNASATSAPTARDFG-KKKRTNRSAKLKQSKLGLRREQWLSQVAMINKGDKEEM 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
                +  +  +  +L     NL    +E+    H H  F ES SNSP    +SIL G +
Sbjct: 61  ESNRRIGSEKPDQRDLPRPVENL----DEDNNGTHRHESFIESLSNSP----NSILSGMN 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S+P+F+ SSS     S S G  SG++TEEE+ ++   D CLDDWEA ADALAA D++H++
Sbjct: 121 SIPNFSSSSS-----SGSGGSCSGNITEEEDADD---DGCLDDWEAIADALAADDEKHEK 180

Query: 181 CS--ESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQGIVQRAFMNCHAWRPDDAFRPQS 240
            +  ES      + Q    G +   L +   DS       +R   +  AWRPDD  RPQ 
Sbjct: 181 ENPPESCQEHEDIKQSALIGGADVVLRDAKADSQ------RRKQKSNQAWRPDDKLRPQG 240

Query: 241 LPTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLC 300
           LP L KQ SFP  +  F          +V  VP+SCPIC+EDLDLTDS+FLPC CGFRLC
Sbjct: 241 LPNLEKQRSFPVMNLHF---------SSVTVVPSSCPICYEDLDLTDSNFLPCPCGFRLC 300

Query: 301 LFCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISRS 350
           LFCHK I + DGRCPGCRKPY+R+    + +V  G     +ARS SM  RS
Sbjct: 301 LFCHKTICDGDGRCPGCRKPYERNTIKFEASVQGGGLTIRLARSSSMFCRS 319

[Close]

BLAST of Sed0002761 vs. TAIR 10
Match: AT3G48070.2 (RING/U-box superfamily protein )

HSP 1 Score: 238.4 bits (607), Expect = 8.5e-63
Identity = 159/350 (45.43%), Postives = 205/350 (58.57%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           M++D ITNAS + AP ARD    KK+  R +KLKQSKL +RREQWLS+ A+ +K   EE 
Sbjct: 1   MISDSITNASATSAPTARDFG-KKKRTNRSAKLKQSKLGLRREQWLSQVAMINKGDKEEM 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
                +  +  +  +L     NL    +E+    H H  F ES SNSP    +SIL G +
Sbjct: 61  ESNRRIGSEKPDQRDLPRPVENL----DEDNNGTHRHESFIESLSNSP----NSILSGMN 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S+P+F+ SSS     S S G  SG++TEEE+ ++   D CLDDWEA ADALAA D++H++
Sbjct: 121 SIPNFSSSSS-----SGSGGSCSGNITEEEDADD---DGCLDDWEAIADALAADDEKHEK 180

Query: 181 CS--ESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQGIVQRAFMNCHAWRPDDAFRPQS 240
            +  ES      + Q    G +   L +   DS       +R   +  AWRPDD  RPQ 
Sbjct: 181 ENPPESCQEHEDIKQSALIGGADVVLRDAKADSQ------RRKQKSNQAWRPDDKLRPQG 240

Query: 241 LPTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLC 300
           LP L KQ SFP  +  F          +V  VP+SCPIC+EDLDLTDS+FLPC CGFRLC
Sbjct: 241 LPNLEKQRSFPVMNLHF---------SSVTVVPSSCPICYEDLDLTDSNFLPCPCGFRLC 300

Query: 301 LFCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISR 349
           LFCHK I + DGRCPGCRKPY+R+    + +V  G     +ARS SM  R
Sbjct: 301 LFCHKTICDGDGRCPGCRKPYERNTIKFEASVQGGGLTIRLARSSSMFCR 318

[Close]

BLAST of Sed0002761 vs. TAIR 10
Match: AT5G62910.1 (RING/U-box superfamily protein )

HSP 1 Score: 233.8 bits (595), Expect = 2.1e-61
Identity = 156/358 (43.58%), Postives = 210/358 (58.66%), Query Frame = 0


Query: 1   MVTDPITNASISLAPNARDLPLTKKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEED 60
           M+TD ITNAS + AP  RD    KK+  + +K+KQ+KL +RREQWLS+ AV +K+  EE 
Sbjct: 1   MITDSITNASATSAP--RDSG-KKKRNNKSAKMKQNKLGLRREQWLSQVAVSNKEVKEER 60

Query: 61  NRLDSVVVKTGEGVNLSSKEINLREIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGND 120
           +      V   +  +  S +   RE     G ++  H  F ESPSNS        +GG  
Sbjct: 61  S------VNRSQKPHHESSDKVRREEDNNGGNNLLHHESFMESPSNSS-------VGGTY 120

Query: 121 SVPHFTGSSSSSSCHSSSSGCRSGSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQ 180
           S  +F+G SS SS  SSSSG  SG++TEEE  +++ +D C+DDWEA ADALAA ++    
Sbjct: 121 SSTNFSGRSSRSS--SSSSGFCSGNITEEENVDDD-DDGCVDDWEAVADALAAEEEIE-- 180

Query: 181 CSESSPRDNVVSQLDSGGDSRNELGEGNGDSSIEQG----------IVQRAFMNCHAWRP 240
             +S P ++V  Q+  G  + N       D+S   G          +  R   +  AWR 
Sbjct: 181 -KKSRPLESVKEQVSVGQSASNVCDSSISDASDVVGVEDPKQECLRVSSRKQTSNRAWRL 240

Query: 241 DDAFRPQSLPTLSKQLSFPNADRRFGCGGISWACGAVMPVPTSCPICFEDLDLTDSSFLP 300
           DD  RPQ LP L+KQLSFP  D+RF          + + +P+SCPIC+EDLDLTDS+FLP
Sbjct: 241 DDDLRPQGLPNLAKQLSFPELDKRF----------SSVAIPSSCPICYEDLDLTDSNFLP 300

Query: 301 CFCGFRLCLFCHKRILEEDGRCPGCRKPYDRDPADSKTNVHDGSPKFPMARSRSMISR 349
           C CGFRLCLFCHK I + DGRCPGCRKPY+R+   ++T++  G     +ARS SM  +
Sbjct: 301 CPCGFRLCLFCHKTICDGDGRCPGCRKPYERNMVKAETSIQGGGLTIRLARSSSMFCK 326

[Close]

BLAST of Sed0002761 vs. TAIR 10
Match: AT1G74870.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-17
Identity = 86/301 (28.57%), Postives = 132/301 (43.85%), Query Frame = 0


Query: 24  KKKRVRYSKLKQSKLDVRREQWLSRGAVKDKKWNEEDNRLDSVVVKTGEGVNLSSKEINL 83
           K+K   + KLKQ K+D RR+QW+S+    +    E   RL S++ K     +  +  I+ 
Sbjct: 22  KRKANWFCKLKQWKIDARRKQWISQWKKANVDEEEIGRRLRSLLEKL---TDQKAWRIDY 81

Query: 84  REIGEENGRSVHGHSDFSESPSNSPPSLGSSILGGNDSVPHFTGSSSSSSCHSSSSGCRS 143
            +  E++   +   S F+ SP        +S+L   DSV        S  C      C S
Sbjct: 82  DD-DEDDEIDLERTSSFASSP--------TSVLKRKDSV--------SGDCF-----CCS 141

Query: 144 GSVTEEEEEEEERNDDCLDDWEAFADALAATDKQHDQCSESSPRDNVVSQLDSGGDSRNE 203
             +TEEEEE     DD  D+W+ F DAL + +  +++ S     D    + D   D+   
Sbjct: 142 KQMTEEEEEV---FDDAYDNWDGFKDALNSFENDNNESSRLVTEDFEQEEEDLIPDTSQR 201

Query: 204 LGEGNGDSSIEQGIVQRAFMNCHAWRPDDAFRPQSLPTL---SKQLSFPNADRRFGCGGI 263
           + +   +++                       P +  T+   S +    N++++ G G  
Sbjct: 202 MNKCKQEAA-----------------------PGNQTTIHRNSNKKKRSNSEKQRGDG-- 259

Query: 264 SWACGAVMPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYD 322
                        CPIC E +D TD  F PC CGFR+CLFCH +I E + RCP CRK Y 
Sbjct: 262 ----------DEECPICSELMDATDLEFEPCTCGFRICLFCHNKISENEARCPACRKDYK 259

[Close]

BLAST of Sed0002761 vs. TAIR 10
Match: AT3G45630.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-11
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 273 SCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRIL------EEDGRCPGCRKPYDRD 323
           +CP+C E++DLTD    PC CG+++C++C   I+      + +GRCP CR PYD++
Sbjct: 8   TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPYDKE 63

The following BLAST results are available for this feature:

BLAST of Sed0002761 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138290.2	2.8e-164	85.71	uncharacterized protein LOC101211244 [Cucumis sativus] >KAE8652409.1 hypothetica...	[more]
XP_008453149.1	1.0e-163	85.43	PREDICTED: uncharacterized protein LOC103493947 [Cucumis melo]	[more]
XP_038878939.1	1.8e-163	85.75	uncharacterized protein LOC120071026 [Benincasa hispida]	[more]
KAA0057903.1	2.3e-163	85.39	suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa]	[more]
TYJ98591.1	8.9e-163	85.34	suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0002761 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O95628	1.8e-12	52.73	CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 S...	[more]
Q8BT14	1.8e-12	52.73	CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 ...	[more]
P34909	4.8e-10	50.00	General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisia...	[more]
Q09818	1.4e-09	48.00	Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharo...	[more]

BLAST of Sed0002761 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BVJ1	5.1e-164	85.43	uncharacterized protein LOC103493947 OS=Cucumis melo OX=3656 GN=LOC103493947 PE=...	[more]
A0A5A7UPV5	1.1e-163	85.39	Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3BIS7	4.3e-163	85.34	Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1C357	1.0e-156	83.14	uncharacterized protein LOC111007016 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1F4L8	1.3e-156	84.57	uncharacterized protein LOC111440610 OS=Cucurbita moschata OX=3662 GN=LOC1114406...	[more]

BLAST of Sed0002761 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48070.1	3.8e-63	45.58	RING/U-box superfamily protein	[more]
AT3G48070.2	8.5e-63	45.43	RING/U-box superfamily protein	[more]
AT5G62910.1	2.1e-61	43.58	RING/U-box superfamily protein	[more]
AT1G74870.1	2.4e-17	28.57	RING/U-box superfamily protein	[more]
AT3G45630.1	3.4e-11	42.86	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 270..333 e-value: 7.2E-19 score: 68.9
None	No IPR available	PFAM	PF14570	zf-RING_4	coord: 274..320 e-value: 2.2E-18 score: 65.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..349
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..159
None	No IPR available	PANTHER	PTHR12603:SF7	RING/U-BOX SUPERFAMILY PROTEIN	coord: 8..347
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 272..325
IPR039780	CCR4-NOT transcription complex subunit 4	PANTHER	PTHR12603	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	coord: 8..347
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 274..316 score: 9.169853
IPR039515	NOT4, modified RING finger, HC subclass (C4C4-type)	CDD	cd16618	mRING-HC-C4C4_CNOT4	coord: 274..317 e-value: 1.10257E-18 score: 76.4992

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002761.1	Sed0002761.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0004842	ubiquitin-protein transferase activity