Sed0002168 (gene) Chayote v1

Overview


Name	Sed0002168
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Gag/pol protein
Location	LG02: 35140748 .. 35141467 (+)
RNA-Seq Expression	Sed0002168
Synteny	Sed0002168

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTTATTATCGATGAGAAAAAGTTTGTTCTGACGGAAGAATGTCCTCTGATACCAACACCTAATGTACCACAAAATGTTTGTGAGGCGCATGACCGTTTGCTGAATGCTAATGAAAAGGAAAGGGTCTATATCTTGGCAAGTGTCTCGGACATTCTGGCCAAGAAACTAAAGAACATGGTAAATGTTTTAGAGATGATGAGAGCCCTCCATAAGATGTTTGGGAAACCATCGTCTCAGGTAAAACATGATGTTATCCAAGCCCTTCGTGGAGTTAAGATGAAGCATGTGCTCTAGATGATGATGTACTTCAACACGGCTAAAATGAATGGGGTCGTTATAGACGAAGCTAGTCAGGTGAACTTTATTCTTAAGAAGCTACCGAGTAGCTTCTTATAATTTAAAAGCAATGTTGTTATGAACAAGATTGATTTTAACCCCACTACACTTCTTGATGAACTTCAAACCTTCGAGTCCATGATGAAAGTCAAGGACAAAAAAGGGGAGGAAAATGTTGTCACCAAGAATCAGAGTTCTAGAACCACGAGTTCAGGAACCAAGCCTAAAGGTTGGACCTTCATGGCAAAGTTTTCAAAGAAGAACAATACTGATTGGAGCAAGAATAAGCGCAGATCTCTAAGGAAGGTCGAGGCCGATAAGGATGGAAAATGTTTATATTGTCAAAAGCTTAGTCATTGGAAAAAGAATTGTCTTTGA

mRNA sequence

ATGATTCTTATTATCGATGAGAAAAAGTTTGTTCTGACGGAAGAATGTCCTCTGATACCAACACCTAATGTACCACAAAATGTTTGTGAGGCGCATGACCGTTTGCTGAATGCTAATGAAAAGGAAAGGGTCTATATCTTGGCAAGTGTCTCGGACATTCTGGCCAAGAAACTAAAGAACATGGTAAATGTTTTAGAGATGATGAGAGCCCTCCATAAGATGTTTGGGAAACCATCGTCTCAGATTGATTTTAACCCCACTACACTTCTTGATGAACTTCAAACCTTCGAGTCCATGATGAAAGTCAAGGACAAAAAAGGGGAGGAAAATGTTGTCACCAAGAATCAGAGTTCTAGAACCACGAGTTCAGGAACCAAGCCTAAAGGTTGGACCTTCATGGCAAAGTTTTCAAAGAAGAACAATACTGATTGGAGCAAGAATAAGCGCAGATCTCTAAGGAAGGTCGAGGCCGATAAGGATGGAAAATGTTTATATTGTCAAAAGCTTAGTCATTGGAAAAAGAATTGTCTTTGA

Coding sequence (CDS)

ATGATTCTTATTATCGATGAGAAAAAGTTTGTTCTGACGGAAGAATGTCCTCTGATACCAACACCTAATGTACCACAAAATGTTTGTGAGGCGCATGACCGTTTGCTGAATGCTAATGAAAAGGAAAGGGTCTATATCTTGGCAAGTGTCTCGGACATTCTGGCCAAGAAACTAAAGAACATGGTAAATGTTTTAGAGATGATGAGAGCCCTCCATAAGATGTTTGGGAAACCATCGTCTCAGATTGATTTTAACCCCACTACACTTCTTGATGAACTTCAAACCTTCGAGTCCATGATGAAAGTCAAGGACAAAAAAGGGGAGGAAAATGTTGTCACCAAGAATCAGAGTTCTAGAACCACGAGTTCAGGAACCAAGCCTAAAGGTTGGACCTTCATGGCAAAGTTTTCAAAGAAGAACAATACTGATTGGAGCAAGAATAAGCGCAGATCTCTAAGGAAGGTCGAGGCCGATAAGGATGGAAAATGTTTATATTGTCAAAAGCTTAGTCATTGGAAAAAGAATTGTCTTTGA

Protein sequence

MILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQIDFNPTTLLDELQTFESMMKVKDKKGEENVVTKNQSSRTTSSGTKPKGWTFMAKFSKKNNTDWSKNKRRSLRKVEADKDGKCLYCQKLSHWKKNCL

Homology

[Close]

BLAST of Sed0002168 vs. NCBI nr
Match: KAA0055498.1 (gag-pol fusion protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-22
Identity = 78/209 (37.32%), Postives = 115/209 (55.02%), Query Frame = 0


Query: 2   ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNM 61
           +LIID+ +FVL EECP +PT N  + + E ++R   ANEK R YIL S+S++LAKK +++
Sbjct: 29  VLIIDDLRFVLVEECPQVPTANATRTIREPYERWAKANEKARAYILTSLSEVLAKKHESI 88

Query: 62  VNVLEMMRALHKMFGKPSSQID-----------------------------FNPTTLLDE 121
           +   E+M +L +MF    + ID                             +  TTLL+E
Sbjct: 89  LTAREIMDSLQEMFEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNE 148

Query: 122 LQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKP-KGWTFMAKFSKKNNTDWSKNK-- 177
           LQTFES+MK+K +KGE NV T  +   R ++SGTK     +   K+ KKN    +K    
Sbjct: 149 LQTFESLMKIKGQKGETNVATSTRKFHRRSTSGTKSMPSSSGNKKWKKKNGGQGNKANLA 208

[Close]

BLAST of Sed0002168 vs. NCBI nr
Match: KAA0037371.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 5.5e-20
Identity = 79/225 (35.11%), Postives = 105/225 (46.67%), Query Frame = 0


Query: 9   KFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMM 68
           +FVL EECP +   N  + V EA++R   ANEK R YILAS+S++LAKK ++M+   E+M
Sbjct: 2   RFVLVEECPQVSAANATRTVREAYERWAKANEKARAYILASLSEVLAKKHESMLTAREIM 61

Query: 69  RALHKMFGKPS----------------------------------------------SQI 128
            +L +MFG+ S                                              SQI
Sbjct: 62  DSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEAVIDEASQI 121

Query: 129 DFNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWTFMAKFSKKNN 177
            +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SG K     FM   S   N
Sbjct: 122 AYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNK-----FMP--SSSGN 181

[Close]

BLAST of Sed0002168 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-19
Identity = 82/256 (32.03%), Postives = 115/256 (44.92%), Query Frame = 0


Query: 2   ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNM 61
           +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VNVLEMMRALHKMFGKPSSQID-------------------------------------- 121
           +   E+M +L +MFG+ S QI                                       
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 -------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVV 177
                                          +  TTLL+ELQTFES+MK+K +KGE NV 
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVA 208

[Close]

BLAST of Sed0002168 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-19
Identity = 82/256 (32.03%), Postives = 115/256 (44.92%), Query Frame = 0


Query: 2   ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNM 61
           +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M
Sbjct: 28  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 87

Query: 62  VNVLEMMRALHKMFGKPSSQID-------------------------------------- 121
           +   E+M +L +MFG+ S QI                                       
Sbjct: 88  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 147

Query: 122 -------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVV 177
                                          +  TTLL+ELQTFES+MK+K +KGE NV 
Sbjct: 148 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVA 207

[Close]

BLAST of Sed0002168 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-19
Identity = 82/256 (32.03%), Postives = 115/256 (44.92%), Query Frame = 0


Query: 2   ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNM 61
           +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VNVLEMMRALHKMFGKPSSQID-------------------------------------- 121
           +   E+M +L +MFG+ S QI                                       
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 -------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVV 177
                                          +  TTLL+ELQTFES+MK+K +KGE NV 
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVA 208

[Close]

BLAST of Sed0002168 vs. ExPASy TrEMBL
Match: A0A5A7UKD1 (Gag-pol fusion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00770 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.6e-23
Identity = 78/209 (37.32%), Postives = 115/209 (55.02%), Query Frame = 0


Query: 2   ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNM 61
           +LIID+ +FVL EECP +PT N  + + E ++R   ANEK R YIL S+S++LAKK +++
Sbjct: 29  VLIIDDLRFVLVEECPQVPTANATRTIREPYERWAKANEKARAYILTSLSEVLAKKHESI 88

Query: 62  VNVLEMMRALHKMFGKPSSQID-----------------------------FNPTTLLDE 121
           +   E+M +L +MF    + ID                             +  TTLL+E
Sbjct: 89  LTAREIMDSLQEMFEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNE 148

Query: 122 LQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKP-KGWTFMAKFSKKNNTDWSKNK-- 177
           LQTFES+MK+K +KGE NV T  +   R ++SGTK     +   K+ KKN    +K    
Sbjct: 149 LQTFESLMKIKGQKGETNVATSTRKFHRRSTSGTKSMPSSSGNKKWKKKNGGQGNKANLA 208

[Close]

BLAST of Sed0002168 vs. ExPASy TrEMBL
Match: A0A5A7T706 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00760 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-20
Identity = 79/225 (35.11%), Postives = 105/225 (46.67%), Query Frame = 0


Query: 9   KFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMM 68
           +FVL EECP +   N  + V EA++R   ANEK R YILAS+S++LAKK ++M+   E+M
Sbjct: 2   RFVLVEECPQVSAANATRTVREAYERWAKANEKARAYILASLSEVLAKKHESMLTAREIM 61

Query: 69  RALHKMFGKPS----------------------------------------------SQI 128
            +L +MFG+ S                                              SQI
Sbjct: 62  DSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEAVIDEASQI 121

Query: 129 DFNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWTFMAKFSKKNN 177
            +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SG K     FM   S   N
Sbjct: 122 AYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNK-----FMP--SSSGN 181

[Close]

BLAST of Sed0002168 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-20
Identity = 82/256 (32.03%), Postives = 115/256 (44.92%), Query Frame = 0


Query: 2   ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNM 61
           +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VNVLEMMRALHKMFGKPSSQID-------------------------------------- 121
           +   E+M +L +MFG+ S QI                                       
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 -------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVV 177
                                          +  TTLL+ELQTFES+MK+K +KGE NV 
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVA 208

[Close]

BLAST of Sed0002168 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-20
Identity = 82/256 (32.03%), Postives = 115/256 (44.92%), Query Frame = 0


Query: 2   ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNM 61
           +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VNVLEMMRALHKMFGKPSSQID-------------------------------------- 121
           +   E+M +L +MFG+ S QI                                       
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 -------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVV 177
                                          +  TTLL+ELQTFES+MK+K +KGE NV 
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVA 208

[Close]

BLAST of Sed0002168 vs. ExPASy TrEMBL
Match: A0A5D3DS88 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G001000 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-20
Identity = 82/256 (32.03%), Postives = 115/256 (44.92%), Query Frame = 0


Query: 2   ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNM 61
           +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VNVLEMMRALHKMFGKPSSQID-------------------------------------- 121
           +   E+M +L +MFG+ S QI                                       
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNKEASVREHVLYMMVHFNVEKMNGAV 148

Query: 122 -------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVV 177
                                          +  TTLL+ELQTFES+MK+K +KGE NV 
Sbjct: 149 IDEASQVSFILESLPESLLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVA 208

The following BLAST results are available for this feature:

BLAST of Sed0002168 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055498.1	1.6e-22	37.32	gag-pol fusion protein [Cucumis melo var. makuwa]	[more]
KAA0037371.1	5.5e-20	35.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	1.2e-19	32.03	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.2e-19	32.03	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.2e-19	32.03	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0002168 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002168 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKD1	7.6e-23	37.32	Gag-pol fusion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2...	[more]
A0A5A7T706	2.7e-20	35.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G0076...	[more]
A0A5A7SMH8	6.0e-20	32.03	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	6.0e-20	32.03	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5D3DS88	6.0e-20	32.03	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00100...	[more]

BLAST of Sed0002168 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002168.1	Sed0002168.1	mRNA