Sed0001913 (gene) Chayote v1

Overview


Name	Sed0001913
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RGG repeats nuclear RNA binding protein A-like
Location	LG05: 8820105 .. 8823533 (+)
RNA-Seq Expression	Sed0001913
Synteny	Sed0001913

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAATCCCATTAGGGTTTTTTAAGTTGAGATTTATTCCCAACCTCATATCTGCCGCCTTAGGGTTTTCCTTTCTTCCGAATTGTCAAATTCCTCTGAGTTTCTACTCTTCTTCTCCAACTCATCGTTATTCATCTTCAATCGCCTCTGTTCTTCATGGATTCCAATCATTTCTGAGATTTTTTGTTTGTGGGGTTGATTTTGCCTTTCCAGTTCGTGCGTTGCAGTTCAAGGTTGAACGGATATGGCGACCATGAACCCTTTTGATCTCTTGGTCGATGACGACAACGAGGACCCCAATCAGCTTGCCGCTTCTGCTCAACGCTCCGCCCCGTCGCCGCCGTCGAAGAAGGAACCGCCTCCGGCTCAGCCTCCCAAGCCGGCGAAGCTTCCTTCCAAGCCGCTCCCCCCTGCTCAGGCTGGTGGGTTTTCTTTCTTCTACTCTTGCTTCTTTGCGTTTCCTGTTTTTGTGATTTGTTTCGATGTGGGTTATGTTTTTTTGTCGTCGTTATCATGTTTAGCCTTTTTTGGAATTTGATATTGTTAGTTGTAGTTTAAGGTGAGTTTTATTTTTTTGCAATGCTGTGTATTGATGATTAAATGAATGTATTGTATGGTTATTGTTTGTCATTTGTTCCTTTTGGATTGAGCTTGTTTGTTTAAAGTATCGTTCCTTTCGGCTCTGCGATTGATTGGTAAAGCTAAGTTTTGTTCTTCTTTCTGTGGTTATAAGTATTTGAAACGTTTTTCTTAATGTAAATATTTGTGTTTGTTTTAATTATGAGTTTAATGAGTATGTGTCGAAATCGTTATTGGTTTGATTAATATAGATAGTTCGTTTCGTTCTCCTTCAATTATTGCTTTTTGAATACCAAGATTCATTTAGAAATCTAGAATGAAAAGATTCAATTAAGCGACTGGGATATTAAAAACAACTTATCACGAGGATTAAACTCCTTAAAATGTCATATATGAGGTAAGTATGAAGGTGTCAGTGTCTCATAGATAGCAGGCTTTTTTATGTGTTTAACTTAATTTTTTTATGCCAATTAACTGAATGTGTAGGGGCTTGTTCATCTAACGAGCTACTCATATAGATGTTGAAATTATTGTTGTTATTTGTGAAAAGTTAATAGTTTCATTGTTCATTTTAATTCTGTTACAGAGCTTAGATTGTAAGAAGTACATGGCTGTAATCTTGTTGAACTTTTTTTATTACTTGTCTTTTAGAATATTGCTTATAAACCTAGACATTATATTGATTTTAATTTTATTATTGTCCAGTAAGGGAGTCAAGGAATGAGAATAGCCGTGGTCGTGGAGGTGGTCGCGGCTATGGGCGAGGACGTGGTGGTGGAGGATTCAATAGAGATCAAGCCAATAATGAAAACGGGGGCAGGAACGGATACTCTGATCGTTATCAGCCAACTGAGGAAGGTGAAAAGGGGGATGAAAAGCGTGGTTATGGTGCTCCCCGTGGCCCTTTCCTTGGTCCTCGTCGTGGTGGCTTCAGCAATGGAGAAGCAGTAGAAGGGGAACAACCCCGAAGATTTTATGAACGCCGCAGTGGCACTGGACGCGGGTTAGTATGTTCTTTCTGAGCGTACTTGTTTCTCTTTTTAATCAATTTTCCAGAAATTTGGTTTTGTATTTATCTTACACTAGATGTTTTGATTTAGCAATGAGTTCAAGCGAGATGGGGCGGGTCGCCGAAACTGGGGATCTCCTGTTGATGAAGTTTCCCCGTAAGTTTGCTTATCTAAATGTGACAAACATATTTGATATAGTTCTGTTAGTTACTTAACCTGTGAATTTCAAGGGATGTGGAAGAGCCGGTTGCTGAAAATGAAAAGAATGTTGTTCCGGAGAAACAATTGGGAGAGGATGTTGTCTTTGATGACAACAACAAAGAGGAGGCTGTGAAGGAGCCCGAAGAGAAGGAACCCGAGGACAAGGTACGGGTTATTATTTGAAGTATTAATCTATCTATTAGTATTTCATATCAATTGGCTTAATCTGTTATTGTTCTATATTTTCAGGAAATGACTCTCAAAGAGTATGAGAAGCTCCGTGAAGAGAATAGGAAACTGCTGGCTAAGACTGAGCTGAGGAAGGCTGAGGTGGATGAGGAATTGGAAAACATGCAGCAGCTTTCCTGCAAGAAAAGCAATGATGAAATATTTGCTAAATTGGTAACAATTCCTCTCATGTTACTCTCACAATTCCATTTTTATCTTTGCTTTTGTAGTTAAATATACAGATCTTTATTGTCAGGGTGCTGATAAGGATAAACGCAAAGATATTGCTGACAAGGACGAGAAGGCGAAGAAGGTAGTTAATCTTTTGTTCCTCAGCAGCTTATTAATGTCTGGTCTTTATGATATTCTGAACTCAACTTGATTGGCTTCGCAGTTTTGAATTAAATTCTGTAGGTGTTTTGTCGCATATGTTCGTTGTGGATGAATTGTCCAAATACTGGTTTTTGAGTTTAGGGTTGGCTTAGTGGTCAAAGAGGGTGTCTTAAGAATCTAGAGGGTTATGTGTTCAATCTATGGTGTTGGTGATGATGACTAGACTACCTAGTTAAGAATTAATTTTTTACGAGTTTTTTGGACTGTTGGGCTGACACTCACGGATATAGAAAAAATGAGGCTGGTTTTGGATACTCCACGGATATTAAAAAATGTTGGTTTTGGATTTATTTGGCAGTTTCTCTTTGTTTTGCTTATTAGAATATACAATTGTTGAACTATCGTTTTCTTCATTAGTATTTAAAGTAGTGCATAGTCGGGCATGTCTAAGATTCAATCCAGGCCAATCATACTGAGAAATATCTTCTACCGTTTCCTTTGTTTACATTAACTTGTATTTATCTGAACTAATTCAATAAATTGTTTTTGGTTGTAGTCTGTGACCATTACCGAGTTCCTGAAGCCTGCGGAAGGCGAGAGGTACTATAATCCAGGTGGTCGTGGTAGGGGCCGTGGGCGAGGGTCAAGAGGCGGTTTCAATAGCGGAAGCAACAGAATGATGAATAATGTGGCAGCCCCCTCCATTGAAGACCCAGGGCAGTTCCCTTCATTGAGTGCTAAGTGAGAATTTACCCCACTTGATAATCTATTTGGTCACAACATTTTAAAGTTTCTAGAGATATCATATCGGGATTTTTGAGTTACAACTACCAACAGGATTCTGAATACTCCCTCTTCTAATGCTGCTAAGTAGTAGTGTAGATCTTGGATGTTATGTCTCGAATGTCATCGTAAGTTATGCATCAATTTTGATTTCGTTGTCGGATAGTTTATTATTATTATTATTATTTAGGTCTCAAATTTTGCCTCTGGTTCTTTCACCAACTTTTTTCATTAAGCTCTTGTTTTGCTGATCTCTGTGTCTGGCTTCAAAGTGTGTTTTGCTTTGTTAGTCTCC

mRNA sequence

ATTAAATCCCATTAGGGTTTTTTAAGTTGAGATTTATTCCCAACCTCATATCTGCCGCCTTAGGGTTTTCCTTTCTTCCGAATTGTCAAATTCCTCTGAGTTTCTACTCTTCTTCTCCAACTCATCGTTATTCATCTTCAATCGCCTCTGTTCTTCATGGATTCCAATCATTTCTGAGATTTTTTGTTTGTGGGGTTGATTTTGCCTTTCCAGTTCGTGCGTTGCAGTTCAAGGTTGAACGGATATGGCGACCATGAACCCTTTTGATCTCTTGGTCGATGACGACAACGAGGACCCCAATCAGCTTGCCGCTTCTGCTCAACGCTCCGCCCCGTCGCCGCCGTCGAAGAAGGAACCGCCTCCGGCTCAGCCTCCCAAGCCGGCGAAGCTTCCTTCCAAGCCGCTCCCCCCTGCTCAGGCTGTAAGGGAGTCAAGGAATGAGAATAGCCGTGGTCGTGGAGGTGGTCGCGGCTATGGGCGAGGACGTGGTGGTGGAGGATTCAATAGAGATCAAGCCAATAATGAAAACGGGGGCAGGAACGGATACTCTGATCGTTATCAGCCAACTGAGGAAGGTGAAAAGGGGGATGAAAAGCGTGGTTATGGTGCTCCCCGTGGCCCTTTCCTTGGTCCTCGTCGTGGTGGCTTCAGCAATGGAGAAGCAGTAGAAGGGGAACAACCCCGAAGATTTTATGAACGCCGCAGTGGCACTGGACGCGGCAATGAGTTCAAGCGAGATGGGGCGGGTCGCCGAAACTGGGGATCTCCTGTTGATGAAGTTTCCCCGGATGTGGAAGAGCCGGTTGCTGAAAATGAAAAGAATGTTGTTCCGGAGAAACAATTGGGAGAGGATGTTGTCTTTGATGACAACAACAAAGAGGAGGCTGTGAAGGAGCCCGAAGAGAAGGAACCCGAGGACAAGGAAATGACTCTCAAAGAGTATGAGAAGCTCCGTGAAGAGAATAGGAAACTGCTGGCTAAGACTGAGCTGAGGAAGGCTGAGGTGGATGAGGAATTGGAAAACATGCAGCAGCTTTCCTGCAAGAAAAGCAATGATGAAATATTTGCTAAATTGGGTGCTGATAAGGATAAACGCAAAGATATTGCTGACAAGGACGAGAAGGCGAAGAAGTCTGTGACCATTACCGAGTTCCTGAAGCCTGCGGAAGGCGAGAGGTACTATAATCCAGGTGGTCGTGGTAGGGGCCGTGGGCGAGGGTCAAGAGGCGGTTTCAATAGCGGAAGCAACAGAATGATGAATAATGTGGCAGCCCCCTCCATTGAAGACCCAGGGCAGTTCCCTTCATTGAGTGCTAAGTGAGAATTTACCCCACTTGATAATCTATTTGGTCACAACATTTTAAAGTTTCTAGAGATATCATATCGGGATTTTTGAGTTACAACTACCAACAGGATTCTGAATACTCCCTCTTCTAATGCTGCTAAGTAGTAGTGTAGATCTTGGATGTTATGTCTCGAATGTCATCGTAAGTTATGCATCAATTTTGATTTCGTTGTCGGATAGTTTATTATTATTATTATTATTTAGGTCTCAAATTTTGCCTCTGGTTCTTTCACCAACTTTTTTCATTAAGCTCTTGTTTTGCTGATCTCTGTGTCTGGCTTCAAAGTGTGTTTTGCTTTGTTAGTCTCC

Coding sequence (CDS)

ATGGCGACCATGAACCCTTTTGATCTCTTGGTCGATGACGACAACGAGGACCCCAATCAGCTTGCCGCTTCTGCTCAACGCTCCGCCCCGTCGCCGCCGTCGAAGAAGGAACCGCCTCCGGCTCAGCCTCCCAAGCCGGCGAAGCTTCCTTCCAAGCCGCTCCCCCCTGCTCAGGCTGTAAGGGAGTCAAGGAATGAGAATAGCCGTGGTCGTGGAGGTGGTCGCGGCTATGGGCGAGGACGTGGTGGTGGAGGATTCAATAGAGATCAAGCCAATAATGAAAACGGGGGCAGGAACGGATACTCTGATCGTTATCAGCCAACTGAGGAAGGTGAAAAGGGGGATGAAAAGCGTGGTTATGGTGCTCCCCGTGGCCCTTTCCTTGGTCCTCGTCGTGGTGGCTTCAGCAATGGAGAAGCAGTAGAAGGGGAACAACCCCGAAGATTTTATGAACGCCGCAGTGGCACTGGACGCGGCAATGAGTTCAAGCGAGATGGGGCGGGTCGCCGAAACTGGGGATCTCCTGTTGATGAAGTTTCCCCGGATGTGGAAGAGCCGGTTGCTGAAAATGAAAAGAATGTTGTTCCGGAGAAACAATTGGGAGAGGATGTTGTCTTTGATGACAACAACAAAGAGGAGGCTGTGAAGGAGCCCGAAGAGAAGGAACCCGAGGACAAGGAAATGACTCTCAAAGAGTATGAGAAGCTCCGTGAAGAGAATAGGAAACTGCTGGCTAAGACTGAGCTGAGGAAGGCTGAGGTGGATGAGGAATTGGAAAACATGCAGCAGCTTTCCTGCAAGAAAAGCAATGATGAAATATTTGCTAAATTGGGTGCTGATAAGGATAAACGCAAAGATATTGCTGACAAGGACGAGAAGGCGAAGAAGTCTGTGACCATTACCGAGTTCCTGAAGCCTGCGGAAGGCGAGAGGTACTATAATCCAGGTGGTCGTGGTAGGGGCCGTGGGCGAGGGTCAAGAGGCGGTTTCAATAGCGGAAGCAACAGAATGATGAATAATGTGGCAGCCCCCTCCATTGAAGACCCAGGGCAGTTCCCTTCATTGAGTGCTAAGTGA

Protein sequence

MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAVRESRNENSRGRGGGRGYGRGRGGGGFNRDQANNENGGRNGYSDRYQPTEEGEKGDEKRGYGAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVDEVSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLREENRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNSGSNRMMNNVAAPSIEDPGQFPSLSAK

Homology

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BLAST of Sed0001913 vs. NCBI nr
Match: XP_008465866.1 (PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cucumis melo])

HSP 1 Score: 556.6 bits (1433), Expect = 1.6e-154
Identity = 314/361 (86.98%), Postives = 332/361 (91.97%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL ASAQRSAP+ PSKK P PAQP KPAKLPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQL-ASAQRSAPALPSKKAPAPAQPAKPAKLPSKPLPPAQAV 60

Query: 61  RESRNENSR-GRGGGRGYGRGR--GGGGFNRDQANNENGGRNGYSDRYQPTEEGEKGDEK 120
           RES+NENSR GRGGGRG+GRGR  GGGGFNRD ANNEN GRNG+SDRYQ  E+GEK  E+
Sbjct: 61  RESKNENSRGGRGGGRGFGRGRGGGGGGFNRDSANNENSGRNGFSDRYQTPEDGEKAAER 120

Query: 121 RGYGAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVD 180
           RGYGAPRG F GPRRGGFSNGEA EGE+PRR YERRSGTGRGNEFKRDGAGRRNWG+P D
Sbjct: 121 RGYGAPRGSFRGPRRGGFSNGEAEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGD 180

Query: 181 EVSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLR 240
           E +PDVEEPVAENEKNV PE+QLGED V D+N  EEAVKEPEEKEPEDKEMTLKEYEKLR
Sbjct: 181 ENAPDVEEPVAENEKNVAPEQQLGEDGVDDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLR 240

Query: 241 EENRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKS 300
           EE+RKLLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG DKDKRKD+ADK+E+AKKS
Sbjct: 241 EESRKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDVADKEERAKKS 300

Query: 301 VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNSGSNRMMNNVAAPSIEDPGQFPSLSA 359
           VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFN+GSNRM  NVAAPSIEDPGQFPSLSA
Sbjct: 301 VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRM--NVAAPSIEDPGQFPSLSA 358

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BLAST of Sed0001913 vs. NCBI nr
Match: XP_022931786.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata])

HSP 1 Score: 556.2 bits (1432), Expect = 2.0e-154
Identity = 314/362 (86.74%), Postives = 329/362 (90.88%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL  SAQRSAP+ PSKK P  AQP KPA LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQL-VSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAV 60

Query: 61  RESRNENSRGRGGGRGYGRGRGGGGFNRDQANNENGGRNGYSDRYQPTEEGEKGDEKRGY 120
           RES+NENSRGRGGGRG+GRGRGGGGFNRD ANNENGG+NG+SDRYQ  E+GEK  E+RGY
Sbjct: 61  RESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGY 120

Query: 121 GAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVDEVS 180
           G PRG F GPRRGGFSNGE  EGEQPRR YERRSGTGRGNEFKRDGAGRRNWG+P DE++
Sbjct: 121 GGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIA 180

Query: 181 PDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLREEN 240
           PDVEEPVAENEKNV PE+QLGED V DDNNKEEAVKE EEKEPEDKEMTLKEYEKLREE+
Sbjct: 181 PDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREES 240

Query: 241 RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKSVTI 300
           RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLG+DKDKRKDIADK+EKAKKSVTI
Sbjct: 241 RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTI 300

Query: 301 TEFLKPAEGERYYNPGGRGRGRGR-GSRGGFNSGSNRM--MNNVAAPSIEDPGQFPSL-S 359
           TEFLKPAEGERYYNPGGRGRGRGR GSRGGFN+GSNRM      AAPSIED GQFPSL S
Sbjct: 301 TEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMS 360

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BLAST of Sed0001913 vs. NCBI nr
Match: KAG6571794.1 (RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 555.8 bits (1431), Expect = 2.7e-154
Identity = 314/363 (86.50%), Postives = 329/363 (90.63%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL  SAQRSAP+ PSKK P  AQP KPA LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQL-VSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAV 60

Query: 61  RESRNENSRGRGGGRGYGRGRGGGGFNRDQANNENGGRNGYSDRYQPTEEGEKGDEKRGY 120
           RES+NENSRGRGGGRG+GRGRGGGGFNRD ANNENGG+NG+SDRYQ  E+GEK  E+RGY
Sbjct: 61  RESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGY 120

Query: 121 GAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVDEVS 180
           G PRG F GPRRGGFSNGE  EGEQPRR YERRSGTGRGNEFKRDGAGRRNWG+P DE++
Sbjct: 121 GGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIA 180

Query: 181 PDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLREEN 240
           PDVEEPVAENEKNV PE+QLGED V DDNNKEEAVKE EEKEPEDKEMTLKEYEKLREE+
Sbjct: 181 PDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREES 240

Query: 241 RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKSVTI 300
           RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLG+DKDKRKDIADK+EKAKKSVTI
Sbjct: 241 RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTI 300

Query: 301 TEFLKPAEGERYYNPGGRGRGRGR-GSRGGFNSGSNRM---MNNVAAPSIEDPGQFPSL- 359
           TEFLKPAEGERYYNPGGRGRGRGR GSRGGFN+GSNRM       AAPSIED GQFPSL 
Sbjct: 301 TEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAAPSIEDQGQFPSLM 360

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BLAST of Sed0001913 vs. NCBI nr
Match: XP_023554179.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 552.7 bits (1423), Expect = 2.2e-153
Identity = 312/362 (86.19%), Postives = 327/362 (90.33%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL  SAQRSAP+ PSKK P  AQP KPA LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQL-VSAQRSAPAVPSKKAPSLAQPAKPANLPSKPLPPAQAV 60

Query: 61  RESRNENSRGRGGGRGYGRGRGGGGFNRDQANNENGGRNGYSDRYQPTEEGEKGDEKRGY 120
           RES+NENSRGRGGGRG+GRGRGGGGFNRD ANNENGG+NG+SDRYQ  E+GEK  E+RGY
Sbjct: 61  RESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGY 120

Query: 121 GAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVDEVS 180
           G PRG F GPRRGGFSNGE  EGEQPRR YERRSGTGRGNEFKRDGAGRRNWG+P DE++
Sbjct: 121 GGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIA 180

Query: 181 PDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLREEN 240
           PDVEEPVAENEKNV PE+QLGED   DDNNKEEA KE EEKEPEDKEMTLKEYEKLREE+
Sbjct: 181 PDVEEPVAENEKNVAPEQQLGEDGAVDDNNKEEAAKEAEEKEPEDKEMTLKEYEKLREES 240

Query: 241 RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKSVTI 300
           RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLG+DKDKRKDIADK+EKAKKSVTI
Sbjct: 241 RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTI 300

Query: 301 TEFLKPAEGERYYNPGGRGRGRGR-GSRGGFNSGSNRM--MNNVAAPSIEDPGQFPSL-S 359
           TEFLKPAEGERYYNPGGRGRGRGR GSRGGFN+GSNRM      AAPSIED GQFPSL S
Sbjct: 301 TEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMTVAAAAAAPSIEDQGQFPSLMS 360

[Close]

BLAST of Sed0001913 vs. NCBI nr
Match: XP_004148350.1 (RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN60476.1 hypothetical protein Csa_001243 [Cucumis sativus])

HSP 1 Score: 550.8 bits (1418), Expect = 8.5e-153
Identity = 313/361 (86.70%), Postives = 330/361 (91.41%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL ASA RSAP  PSKK P PAQP KPAKLPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQL-ASAHRSAPVLPSKKAPAPAQPAKPAKLPSKPLPPAQAV 60

Query: 61  RESRNENSR-GRGGGRGYGRGR-GGGGFNRDQANNENGGRNGYSDRYQPTEEGEKGDEKR 120
           RES+N+N R GRGGGRG+GRGR GGGGFNRD ANNENGGRNG+SDRYQ  E+GEK  E+R
Sbjct: 61  RESKNDNGRGGRGGGRGFGRGRGGGGGFNRDSANNENGGRNGFSDRYQTPEDGEKAAERR 120

Query: 121 GYGAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVDE 180
           GYGAPRG F GPRR GFSNGEA EGE+PRR YERRSGTGRGNEFKR+GAGRRNWG+P DE
Sbjct: 121 GYGAPRGSFRGPRRAGFSNGEAEEGERPRRVYERRSGTGRGNEFKREGAGRRNWGAPGDE 180

Query: 181 VSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNK-EEAVKEPEEKEPEDKEMTLKEYEKLR 240
            +PDVEEPVAENEKNV PE+QLGED V DDNNK EEAVKEPEEKEPEDKEMTLKEYEKLR
Sbjct: 181 NAPDVEEPVAENEKNVAPEQQLGEDGVVDDNNKTEEAVKEPEEKEPEDKEMTLKEYEKLR 240

Query: 241 EENRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKS 300
           EE+RKLLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG DKDKRKD ADK+E+AKKS
Sbjct: 241 EESRKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDAADKEERAKKS 300

Query: 301 VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNSGSNRMMNNVAAPSIEDPGQFPSLSA 359
           VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFN+GSNRM  NVAAPSIEDPGQFPSLSA
Sbjct: 301 VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRM--NVAAPSIEDPGQFPSLSA 358

[Close]

BLAST of Sed0001913 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.0e-72
Identity = 200/372 (53.76%), Postives = 245/372 (65.86%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPA-KLPSKPLPPAQA 60
           MAT+NPFDLL DDD EDP+QLA + ++   S   K     + P K A KLPSKPLPPAQA
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKIDKS--KKSGQVSSLPAKSAPKLPSKPLPPAQA 60

Query: 61  VRESRNENSRGRGGGRGYGRGRGGGGFNRDQANNENGGRNGYSDRY-QPTEEGEKG---- 120
           VRE+R++  RG GG  G+ RGR  GG+NRD       G NGYS  Y +P+ EG+      
Sbjct: 61  VREARSDAPRGGGGRGGFNRGR--GGYNRDD------GNNGYSGGYTKPSGEGDVSKSSY 120

Query: 121 DEKRGYGAPRGPFLGP-------RRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGA 180
           + + G GAPRG F G        RRGGFSN E  +GE+PRR +ERRSGTGRG++FKRDG+
Sbjct: 121 ERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGS 180

Query: 181 GRRNWGSPVDEVSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKE 240
           GR NWG+P +E++ + E       +  V EK   +DV  D N ++  V   EEKEPEDKE
Sbjct: 181 GRGNWGTPGEEIAAETEAVAGVETEKDVGEKPAVDDVAADANKEDTVV---EEKEPEDKE 240

Query: 241 MTLKEYEKLREENRKLLAKTELRKAEVDEEL-ENMQQLSCKKSNDEIFAKLGADKDKRKD 300
           MTL EYEK+ EE +K L      + +VD ++ E+MQQLS KKSNDEIF KLG+DKDKRKD
Sbjct: 241 MTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD 300

Query: 301 IADKDEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNSGSNRMMNNVAAPSI 359
             DK+EKAKK+V+I EFLKPAEG  YY  G  GRGRG   RGG +SG +    N AAP+I
Sbjct: 301 --DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGYRNEAAPAI 355

[Close]

BLAST of Sed0001913 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.3e-68
Identity = 173/302 (57.28%), Postives = 217/302 (71.85%), Query Frame = 0


Query: 70  GRGGGRGYGRGRG---GGGFNRDQANNEN--GGRNGYSDRYQPTEEGEKG---DEKRGYG 129
           GRGG RG GRGRG   G GFN++ A++EN  G  NG+S RY+  E+GE G   + + GYG
Sbjct: 4   GRGGPRGGGRGRGPGRGRGFNQESADDENAFGSNNGFSGRYRVQEDGESGKLSERRGGYG 63

Query: 130 APRGPFLGPRRGGFSNGEAV--EGEQPRRFYERRSGTGRGNEF-KRDGAGRRNWGSPVDE 189
            PRG F G RRGGF+NG+A   EGE+PRR ++RRSGTGRGNE+ KR+G+GR NWG+P D+
Sbjct: 64  GPRGGFHGGRRGGFNNGDAAEGEGERPRRVFDRRSGTGRGNEYIKREGSGRGNWGTPADD 123

Query: 190 VSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLRE 249
           ++ + E PV + EK V  EK+ G++   +D NK+    EPEEKEPE+KEMTL+EYEKL E
Sbjct: 124 IAQETEVPVNDGEKIVEAEKEAGQEEA-EDTNKDSTAAEPEEKEPEEKEMTLEEYEKLME 183

Query: 250 ENRK--LLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKK 309
           E RK  L  K E RK  +D+ELE+MQ LS KK++DEIF KLG++K+KRK+     EKA+K
Sbjct: 184 EKRKALLALKPEERKVNLDKELESMQLLSNKKNDDEIFIKLGSEKEKRKEAV---EKARK 243

Query: 310 SVTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNSGSNRMMNNVAAPSIEDPGQFPSLS 359
           + +I EFLKPAEGE Y   GGRGRG GRG RGGF  G      + +APSIED GQFPSL 
Sbjct: 244 TQSINEFLKPAEGENYSRRGGRGRGPGRG-RGGFGGGVGG-NKSFSAPSIEDVGQFPSLV 299

[Close]

BLAST of Sed0001913 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.1e-61
Identity = 187/368 (50.82%), Postives = 235/368 (63.86%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MA++NPFDLL  DD EDP+QLA      A S   +K     QPPK AK P+KP PP+QAV
Sbjct: 1   MASLNPFDLL-GDDAEDPSQLAV-----ALSQKVEKAAAAVQPPKAAKFPTKPAPPSQAV 60

Query: 61  RESRNENSRGRG--GGR-GYGRGRGGGGFNRDQANNE-NGGRNGYSDRY-QPTEEGEKGD 120
           RESRN    GRG  GGR G+ RGRG GG+NRD  NN+  G  NG+S  Y +P+E+ +   
Sbjct: 61  RESRNAPQGGRGGTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGFSGGYRRPSEDADGAS 120

Query: 121 EKRGYGAPR--GPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWG 180
                G  R  G   GPRRGG +NGE+ + E+P R Y+R S TG G   KR+G GR NWG
Sbjct: 121 RGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNGGGRGNWG 180

Query: 181 SPVDEVSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPED---KEMTL 240
           +  D++ P  EEP  E EK+ V EKQ GED    +  KE   +E  +KE E+   +EMTL
Sbjct: 181 TTEDDIPPTSEEPTTEVEKSPVAEKQGGEDET-PEAKKELTAEEKAQKEAEEAEAREMTL 240

Query: 241 KEYEKLREENRKLLAKTELRKAEVDEEL-ENMQQLSCKKSND-EIFAKLGADKDKRKDIA 300
           +EYEK+ EE +K L  T++ + +VD ++ E+MQQLS KK+ D EIF KLG+DK+KRKD  
Sbjct: 241 EEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRKDAT 300

Query: 301 DKDEKAKKSVTITEFLKPAEGERYYNPGGRGRGR-GRGSRGGFNSGSNRMMNNVAAPSIE 356
              EKAKKS++I EFLKPA+G+RY   GG  RGR GRG RG    G+ R     AAP+I 
Sbjct: 301 ---EKAKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRG--EGGNQRYAKEAAAPAIG 356

[Close]

BLAST of Sed0001913 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 8.3e-58
Identity = 180/375 (48.00%), Postives = 231/375 (61.60%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MA++NPFDLL DDD EDP+Q+ AS           K   P Q  K  K+P+KP PP+QAV
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVAS--------KPLKVVAPVQTAKSGKMPTKPPPPSQAV 60

Query: 61  RESRNENSRGRGGGRGYGRGRGG-GGFNRDQANNEN-GGRNGYSDRYQPTEEGEKGDEKR 120
           RE+RN    GRG GRG   GRGG GG NRD  NN+     NGY   Y+ +EEG+      
Sbjct: 61  REARNAPGGGRGAGRGGSYGRGGRGGNNRDSRNNDGPANENGYGGGYRRSEEGDGARR-- 120

Query: 121 GYGAPRGPFLGPRRGGFSN-GEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVD 180
             G P G + G RRG +SN G++ + E+PR+ Y+R S T  GNE KRDGAGR NWG+  D
Sbjct: 121 --GGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRANWGTTQD 180

Query: 181 EVSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLR 240
           +++P  EE  A  +KN+  EKQ GE    D  N+  A  E  E++PEDKEMTL+EYEK+ 
Sbjct: 181 DITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPA--EKAEEKPEDKEMTLEEYEKVL 240

Query: 241 EENRKLLAKTELRKAEVD-EELENMQQLSCKKS-NDEIFAKLGADKDKRKDIADKDEKAK 300
           EE +K L  T++ + +VD +  E MQQLS KKS NDE+F KLG +KDKR  I +++EK +
Sbjct: 241 EEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITEREEKTR 300

Query: 301 KSVTITEFLKPAEGERYYNPGG--RGRGRGRGSR------GGFN---SGSNRMMNNVAA- 356
           KS++I EFLKPA+G+ YY P G  +G   GRG R      GG N    G N+     AA 
Sbjct: 301 KSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGGAAAQ 358

[Close]

BLAST of Sed0001913 vs. ExPASy TrEMBL
Match: A0A1S3CPW2 (plasminogen activator inhibitor 1 RNA-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103503456 PE=4 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 7.5e-155
Identity = 314/361 (86.98%), Postives = 332/361 (91.97%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL ASAQRSAP+ PSKK P PAQP KPAKLPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQL-ASAQRSAPALPSKKAPAPAQPAKPAKLPSKPLPPAQAV 60

Query: 61  RESRNENSR-GRGGGRGYGRGR--GGGGFNRDQANNENGGRNGYSDRYQPTEEGEKGDEK 120
           RES+NENSR GRGGGRG+GRGR  GGGGFNRD ANNEN GRNG+SDRYQ  E+GEK  E+
Sbjct: 61  RESKNENSRGGRGGGRGFGRGRGGGGGGFNRDSANNENSGRNGFSDRYQTPEDGEKAAER 120

Query: 121 RGYGAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVD 180
           RGYGAPRG F GPRRGGFSNGEA EGE+PRR YERRSGTGRGNEFKRDGAGRRNWG+P D
Sbjct: 121 RGYGAPRGSFRGPRRGGFSNGEAEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGD 180

Query: 181 EVSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLR 240
           E +PDVEEPVAENEKNV PE+QLGED V D+N  EEAVKEPEEKEPEDKEMTLKEYEKLR
Sbjct: 181 ENAPDVEEPVAENEKNVAPEQQLGEDGVDDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLR 240

Query: 241 EENRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKS 300
           EE+RKLLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG DKDKRKD+ADK+E+AKKS
Sbjct: 241 EESRKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDVADKEERAKKS 300

Query: 301 VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNSGSNRMMNNVAAPSIEDPGQFPSLSA 359
           VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFN+GSNRM  NVAAPSIEDPGQFPSLSA
Sbjct: 301 VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRM--NVAAPSIEDPGQFPSLSA 358

[Close]

BLAST of Sed0001913 vs. ExPASy TrEMBL
Match: A0A6J1EUM3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111438060 PE=4 SV=1)

HSP 1 Score: 556.2 bits (1432), Expect = 9.8e-155
Identity = 314/362 (86.74%), Postives = 329/362 (90.88%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL  SAQRSAP+ PSKK P  AQP KPA LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQL-VSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAV 60

Query: 61  RESRNENSRGRGGGRGYGRGRGGGGFNRDQANNENGGRNGYSDRYQPTEEGEKGDEKRGY 120
           RES+NENSRGRGGGRG+GRGRGGGGFNRD ANNENGG+NG+SDRYQ  E+GEK  E+RGY
Sbjct: 61  RESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGY 120

Query: 121 GAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVDEVS 180
           G PRG F GPRRGGFSNGE  EGEQPRR YERRSGTGRGNEFKRDGAGRRNWG+P DE++
Sbjct: 121 GGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIA 180

Query: 181 PDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLREEN 240
           PDVEEPVAENEKNV PE+QLGED V DDNNKEEAVKE EEKEPEDKEMTLKEYEKLREE+
Sbjct: 181 PDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREES 240

Query: 241 RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKSVTI 300
           RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLG+DKDKRKDIADK+EKAKKSVTI
Sbjct: 241 RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTI 300

Query: 301 TEFLKPAEGERYYNPGGRGRGRGR-GSRGGFNSGSNRM--MNNVAAPSIEDPGQFPSL-S 359
           TEFLKPAEGERYYNPGGRGRGRGR GSRGGFN+GSNRM      AAPSIED GQFPSL S
Sbjct: 301 TEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMS 360

[Close]

BLAST of Sed0001913 vs. ExPASy TrEMBL
Match: A0A0A0LKF6 (HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G914560 PE=4 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 4.1e-153
Identity = 313/361 (86.70%), Postives = 330/361 (91.41%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL ASA RSAP  PSKK P PAQP KPAKLPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQL-ASAHRSAPVLPSKKAPAPAQPAKPAKLPSKPLPPAQAV 60

Query: 61  RESRNENSR-GRGGGRGYGRGR-GGGGFNRDQANNENGGRNGYSDRYQPTEEGEKGDEKR 120
           RES+N+N R GRGGGRG+GRGR GGGGFNRD ANNENGGRNG+SDRYQ  E+GEK  E+R
Sbjct: 61  RESKNDNGRGGRGGGRGFGRGRGGGGGFNRDSANNENGGRNGFSDRYQTPEDGEKAAERR 120

Query: 121 GYGAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVDE 180
           GYGAPRG F GPRR GFSNGEA EGE+PRR YERRSGTGRGNEFKR+GAGRRNWG+P DE
Sbjct: 121 GYGAPRGSFRGPRRAGFSNGEAEEGERPRRVYERRSGTGRGNEFKREGAGRRNWGAPGDE 180

Query: 181 VSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNK-EEAVKEPEEKEPEDKEMTLKEYEKLR 240
            +PDVEEPVAENEKNV PE+QLGED V DDNNK EEAVKEPEEKEPEDKEMTLKEYEKLR
Sbjct: 181 NAPDVEEPVAENEKNVAPEQQLGEDGVVDDNNKTEEAVKEPEEKEPEDKEMTLKEYEKLR 240

Query: 241 EENRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKS 300
           EE+RKLLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG DKDKRKD ADK+E+AKKS
Sbjct: 241 EESRKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDAADKEERAKKS 300

Query: 301 VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNSGSNRMMNNVAAPSIEDPGQFPSLSA 359
           VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFN+GSNRM  NVAAPSIEDPGQFPSLSA
Sbjct: 301 VTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNNGSNRM--NVAAPSIEDPGQFPSLSA 358

[Close]

BLAST of Sed0001913 vs. ExPASy TrEMBL
Match: A0A6J1H1U3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111459594 PE=4 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 7.1e-153
Identity = 311/364 (85.44%), Postives = 331/364 (90.93%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL ASAQRSAP+PPSKK P PAQP K AKLPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQL-ASAQRSAPAPPSKKAPAPAQPAKAAKLPSKPLPPAQAV 60

Query: 61  RESRNENSRGRGGGRGYGRGRGGGG-FNRDQANNENGGRNGYSDRYQPTEEGEKGDEKRG 120
           RE++NENSRGRGGGRGYGRGRGGGG FNRD ANNENGG+NG+SDRYQPTEEGEK  EKRG
Sbjct: 61  REAKNENSRGRGGGRGYGRGRGGGGVFNRDSANNENGGKNGFSDRYQPTEEGEKEAEKRG 120

Query: 121 YGAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVDEV 180
           YGA  G F GPRRGGFSNGE  EGE+PRR YERRSGTGRGNE+KRDGAGRRNWG+P +E+
Sbjct: 121 YGASYGSFRGPRRGGFSNGETEEGERPRRLYERRSGTGRGNEYKRDGAGRRNWGAPGEEI 180

Query: 181 SPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLREE 240
           SPDVEEPVAENEK +  E+QLGED   +DNNKEEAVKEPEEKEPEDKEMTLKEYEKLREE
Sbjct: 181 SPDVEEPVAENEKIIASEQQLGEDGDVNDNNKEEAVKEPEEKEPEDKEMTLKEYEKLREE 240

Query: 241 NRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKSVT 300
           +RKLLAKTELRKAE+DEELENMQQ+S KKSNDEIFAKLGADKDKRKD ADK+EKAKKSVT
Sbjct: 241 SRKLLAKTELRKAEIDEELENMQQISSKKSNDEIFAKLGADKDKRKDNADKEEKAKKSVT 300

Query: 301 ITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNSG-----SNRMMNNVAAPSIEDPGQFPS 359
           ITEFLKPA+GERYY+PGGRGRGRGRGSRGG N+G     SNRM  NVAAPSIEDPGQFPS
Sbjct: 301 ITEFLKPAKGERYYSPGGRGRGRGRGSRGGLNNGNGGSVSNRM--NVAAPSIEDPGQFPS 360

[Close]

BLAST of Sed0001913 vs. ExPASy TrEMBL
Match: A0A6J1I4B3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111470534 PE=4 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 1.2e-152
Identity = 310/361 (85.87%), Postives = 326/361 (90.30%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL  SAQRSAP+ PSKK P  AQP KPA LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQL-VSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAV 60

Query: 61  RESRNENSRGRGGGRGYGRGRGGGGFNRDQANNENGGRNGYSDRYQPTEEGEKGDEKRGY 120
           RES+NENSRGRGGGRG+GRGRGGGGFNRD ANNENGG+NG+SDRYQ  E+GEK  E+RGY
Sbjct: 61  RESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGY 120

Query: 121 GAPRGPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVDEVS 180
           G PRG F GPRRGGFSNGE  E EQPRR YERRSGTGRGNEFKRDGAGRRNWG+P DE++
Sbjct: 121 GGPRGSFRGPRRGGFSNGETEEAEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIA 180

Query: 181 PDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLREEN 240
           PDVE PVAENEKNV PE+QLGED V DDNNKEEAVKE EEKEPEDKEMTLKEYEKLREE+
Sbjct: 181 PDVEAPVAENEKNVAPEQQLGEDGVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREES 240

Query: 241 RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKSVTI 300
           RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLG+DKDKRKDI DK+EKAKKSVTI
Sbjct: 241 RKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIVDKEEKAKKSVTI 300

Query: 301 TEFLKPAEGERYYNPGGRGRGRGR-GSRGGFNSGSNRM-MNNVAAPSIEDPGQFPSL-SA 359
           TEFLKP EGERYYNPGGRGRGRGR GSRGGFN+GSNRM +   AAPSIED GQFPSL SA
Sbjct: 301 TEFLKPTEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAPSIEDQGQFPSLMSA 360

[Close]

BLAST of Sed0001913 vs. TAIR 10
Match: AT4G16830.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 274.2 bits (700), Expect = 1.4e-73
Identity = 200/372 (53.76%), Postives = 245/372 (65.86%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPA-KLPSKPLPPAQA 60
           MAT+NPFDLL DDD EDP+QLA + ++   S   K     + P K A KLPSKPLPPAQA
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKIDKS--KKSGQVSSLPAKSAPKLPSKPLPPAQA 60

Query: 61  VRESRNENSRGRGGGRGYGRGRGGGGFNRDQANNENGGRNGYSDRY-QPTEEGEKG---- 120
           VRE+R++  RG GG  G+ RGR  GG+NRD       G NGYS  Y +P+ EG+      
Sbjct: 61  VREARSDAPRGGGGRGGFNRGR--GGYNRDD------GNNGYSGGYTKPSGEGDVSKSSY 120

Query: 121 DEKRGYGAPRGPFLGP-------RRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGA 180
           + + G GAPRG F G        RRGGFSN E  +GE+PRR +ERRSGTGRG++FKRDG+
Sbjct: 121 ERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGS 180

Query: 181 GRRNWGSPVDEVSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKE 240
           GR NWG+P +E++ + E       +  V EK   +DV  D N ++  V   EEKEPEDKE
Sbjct: 181 GRGNWGTPGEEIAAETEAVAGVETEKDVGEKPAVDDVAADANKEDTVV---EEKEPEDKE 240

Query: 241 MTLKEYEKLREENRKLLAKTELRKAEVDEEL-ENMQQLSCKKSNDEIFAKLGADKDKRKD 300
           MTL EYEK+ EE +K L      + +VD ++ E+MQQLS KKSNDEIF KLG+DKDKRKD
Sbjct: 241 MTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD 300

Query: 301 IADKDEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNSGSNRMMNNVAAPSI 359
             DK+EKAKK+V+I EFLKPAEG  YY  G  GRGRG   RGG +SG +    N AAP+I
Sbjct: 301 --DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGYRNEAAPAI 355

[Close]

BLAST of Sed0001913 vs. TAIR 10
Match: AT5G47210.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 237.7 bits (605), Expect = 1.5e-62
Identity = 187/368 (50.82%), Postives = 235/368 (63.86%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MA++NPFDLL  DD EDP+QLA      A S   +K     QPPK AK P+KP PP+QAV
Sbjct: 1   MASLNPFDLL-GDDAEDPSQLAV-----ALSQKVEKAAAAVQPPKAAKFPTKPAPPSQAV 60

Query: 61  RESRNENSRGRG--GGR-GYGRGRGGGGFNRDQANNE-NGGRNGYSDRY-QPTEEGEKGD 120
           RESRN    GRG  GGR G+ RGRG GG+NRD  NN+  G  NG+S  Y +P+E+ +   
Sbjct: 61  RESRNAPQGGRGGTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGFSGGYRRPSEDADGAS 120

Query: 121 EKRGYGAPR--GPFLGPRRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWG 180
                G  R  G   GPRRGG +NGE+ + E+P R Y+R S TG G   KR+G GR NWG
Sbjct: 121 RGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNGGGRGNWG 180

Query: 181 SPVDEVSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPED---KEMTL 240
           +  D++ P  EEP  E EK+ V EKQ GED    +  KE   +E  +KE E+   +EMTL
Sbjct: 181 TTEDDIPPTSEEPTTEVEKSPVAEKQGGEDET-PEAKKELTAEEKAQKEAEEAEAREMTL 240

Query: 241 KEYEKLREENRKLLAKTELRKAEVDEEL-ENMQQLSCKKSND-EIFAKLGADKDKRKDIA 300
           +EYEK+ EE +K L  T++ + +VD ++ E+MQQLS KK+ D EIF KLG+DK+KRKD  
Sbjct: 241 EEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRKDAT 300

Query: 301 DKDEKAKKSVTITEFLKPAEGERYYNPGGRGRGR-GRGSRGGFNSGSNRMMNNVAAPSIE 356
              EKAKKS++I EFLKPA+G+RY   GG  RGR GRG RG    G+ R     AAP+I 
Sbjct: 301 ---EKAKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRG--EGGNQRYAKEAAAPAIG 356

[Close]

BLAST of Sed0001913 vs. TAIR 10
Match: AT4G16830.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-61
Identity = 165/312 (52.88%), Postives = 204/312 (65.38%), Query Frame = 0


Query: 60  VRESRNENSRGRGGGRGYGRGRGGGGFNRDQANNENGGRNGYSDRY-QPTEEGEKG---- 119
           VRE+R++  RG GG  G+ RGR  GG+NRD       G NGYS  Y +P+ EG+      
Sbjct: 48  VREARSDAPRGGGGRGGFNRGR--GGYNRDD------GNNGYSGGYTKPSGEGDVSKSSY 107

Query: 120 DEKRGYGAPRGPFLGP-------RRGGFSNGEAVEGEQPRRFYERRSGTGRGNEFKRDGA 179
           + + G GAPRG F G        RRGGFSN E  +GE+PRR +ERRSGTGRG++FKRDG+
Sbjct: 108 ERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGS 167

Query: 180 GRRNWGSPVDEVSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKE 239
           GR NWG+P +E++ + E       +  V EK   +DV  D N ++  V   EEKEPEDKE
Sbjct: 168 GRGNWGTPGEEIAAETEAVAGVETEKDVGEKPAVDDVAADANKEDTVV---EEKEPEDKE 227

Query: 240 MTLKEYEKLREENRKLLAKTELRKAEVDEEL-ENMQQLSCKKSNDEIFAKLGADKDKRKD 299
           MTL EYEK+ EE +K L      + +VD ++ E+MQQLS KKSNDEIF KLG+DKDKRKD
Sbjct: 228 MTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD 287

Query: 300 IADKDEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGSRGGFNSGSNRMMNNVAAPSI 359
             DK+EKAKK+V+I EFLKPAEG  YY  G  GRGRG   RGG +SG +    N AAP+I
Sbjct: 288 --DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGYRNEAAPAI 345

[Close]

BLAST of Sed0001913 vs. TAIR 10
Match: AT4G17520.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 225.7 bits (574), Expect = 5.9e-59
Identity = 180/375 (48.00%), Postives = 231/375 (61.60%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLAASAQRSAPSPPSKKEPPPAQPPKPAKLPSKPLPPAQAV 60
           MA++NPFDLL DDD EDP+Q+ AS           K   P Q  K  K+P+KP PP+QAV
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVAS--------KPLKVVAPVQTAKSGKMPTKPPPPSQAV 60

Query: 61  RESRNENSRGRGGGRGYGRGRGG-GGFNRDQANNEN-GGRNGYSDRYQPTEEGEKGDEKR 120
           RE+RN    GRG GRG   GRGG GG NRD  NN+     NGY   Y+ +EEG+      
Sbjct: 61  REARNAPGGGRGAGRGGSYGRGGRGGNNRDSRNNDGPANENGYGGGYRRSEEGDGARR-- 120

Query: 121 GYGAPRGPFLGPRRGGFSN-GEAVEGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVD 180
             G P G + G RRG +SN G++ + E+PR+ Y+R S T  GNE KRDGAGR NWG+  D
Sbjct: 121 --GGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRANWGTTQD 180

Query: 181 EVSPDVEEPVAENEKNVVPEKQLGEDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLR 240
           +++P  EE  A  +KN+  EKQ GE    D  N+  A  E  E++PEDKEMTL+EYEK+ 
Sbjct: 181 DITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPA--EKAEEKPEDKEMTLEEYEKVL 240

Query: 241 EENRKLLAKTELRKAEVD-EELENMQQLSCKKS-NDEIFAKLGADKDKRKDIADKDEKAK 300
           EE +K L  T++ + +VD +  E MQQLS KKS NDE+F KLG +KDKR  I +++EK +
Sbjct: 241 EEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITEREEKTR 300

Query: 301 KSVTITEFLKPAEGERYYNPGG--RGRGRGRGSR------GGFN---SGSNRMMNNVAA- 356
           KS++I EFLKPA+G+ YY P G  +G   GRG R      GG N    G N+     AA 
Sbjct: 301 KSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGGAAAQ 358

[Close]

BLAST of Sed0001913 vs. TAIR 10
Match: AT4G16830.2 (Hyaluronan / mRNA binding family )

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-50
Identity = 123/218 (56.42%), Postives = 152/218 (69.72%), Query Frame = 0


Query: 142 EGEQPRRFYERRSGTGRGNEFKRDGAGRRNWGSPVDEVSPDVEEPVAENEKNVVPEKQLG 201
           +GE+PRR +ERRSGTGRG++FKRDG+GR NWG+P +E++ + E       +  V EK   
Sbjct: 53  DGERPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVGEKPAV 112

Query: 202 EDVVFDDNNKEEAVKEPEEKEPEDKEMTLKEYEKLREENRKLLAKTELRKAEVDEEL-EN 261
           +DV  D N ++  V   EEKEPEDKEMTL EYEK+ EE +K L      + +VD ++ E+
Sbjct: 113 DDVAADANKEDTVV---EEKEPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFES 172

Query: 262 MQQLSCKKSNDEIFAKLGADKDKRKDIADKDEKAKKSVTITEFLKPAEGERYYNPGGRGR 321
           MQQLS KKSNDEIF KLG+DKDKRKD  DK+EKAKK+V+I EFLKPAEG  YY  G  GR
Sbjct: 173 MQQLSNKKSNDEIFIKLGSDKDKRKD--DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGR 232

Query: 322 GRGRGSRGGFNSGSNRMMNNVAAPSIEDPGQFPSLSAK 359
           GRG   RGG +SG +    N AAP+I D  QFPSL  K
Sbjct: 233 GRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGGK 265

The following BLAST results are available for this feature:

BLAST of Sed0001913 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465866.1	1.6e-154	86.98	PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cucumis m...	[more]
XP_022931786.1	2.0e-154	86.74	RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata]	[more]
KAG6571794.1	2.7e-154	86.50	RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp...	[more]
XP_023554179.1	2.2e-153	86.19	RGG repeats nuclear RNA binding protein A-like [Cucurbita pepo subsp. pepo]	[more]
XP_004148350.1	8.5e-153	86.70	RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN60476.1 hypothet...	[more]

BLAST of Sed0001913 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23523	2.0e-72	53.76	RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9SQ56	2.3e-68	57.28	RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409...	[more]
Q9LVT8	2.1e-61	50.82	RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
O23593	8.3e-58	48.00	RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]

BLAST of Sed0001913 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPW2	7.5e-155	86.98	plasminogen activator inhibitor 1 RNA-binding protein-like OS=Cucumis melo OX=36...	[more]
A0A6J1EUM3	9.8e-155	86.74	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0LKF6	4.1e-153	86.70	HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G914...	[more]
A0A6J1H1U3	7.1e-153	85.44	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I4B3	1.2e-152	85.87	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Sed0001913 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16830.1	1.4e-73	53.76	Hyaluronan / mRNA binding family	[more]
AT5G47210.1	1.5e-62	50.82	Hyaluronan / mRNA binding family	[more]
AT4G16830.3	1.3e-61	52.88	Hyaluronan / mRNA binding family	[more]
AT4G17520.1	5.9e-59	48.00	Hyaluronan / mRNA binding family	[more]
AT4G16830.2	2.2e-50	56.42	Hyaluronan / mRNA binding family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 226..264
None	No IPR available	GENE3D	6.10.140.1040		coord: 144..256 e-value: 5.4E-8 score: 35.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 309..358
None	No IPR available	PANTHER	PTHR12299:SF64	PLASMINOGEN ACTIVATOR INHIBITOR 1 RNA-BINDING PROTEIN-LIKE	coord: 1..358
IPR006861	Hyaluronan/mRNA-binding protein	SMART	SM01233	HABP4_PAI_RBP1_2	coord: 146..255 e-value: 3.4E-33 score: 126.3
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 146..254 e-value: 8.6E-25 score: 87.8
IPR019084	Stm1-like, N-terminal	PFAM	PF09598	Stm1_N	coord: 1..74 e-value: 6.5E-21 score: 75.0
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 1..358

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001913.1	Sed0001913.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding