Sed0001835 (gene) Chayote v1

Overview


Name	Sed0001835
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S acidic ribosomal protein P3
Location	LG11: 6014873 .. 6017204 (+)
RNA-Seq Expression	Sed0001835
Synteny	Sed0001835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAAATCAACGAAAAGGAACGAGGGCAAAACAGTCAATTTGAATGGAATTAGGGTTTCTTCTCACAAAATAAAAACGAAACGCGAAGCCGCTGAAAAGAGAGCCTCTCATTTTTCTTCAACCATAATCCCAATTCTTAGATCCAACAATGGGAGTTTTCACCTTCGTTTGCCGGAGCGCCGGTGGAAAATGGACCGCCAAGCAGCATTCCGGCGACCTCGAAGGCTCCGCCGCCTCCACCTATGAGCTTCAGAGGGCACTCGTTCAGACAGCTCTCTCCGCCGATTCCTCCGGCGCCGTTCAGTCATCTTTCTCCTACATCACTCCCACCTCCGCCGTTTTTCAGGTATTCGTTCTTTTCTCTCAAATTTTCGATTTTTCTAGTGGGTTATTTGAATTCTTTTTGGTTTTGTTGCTTGTTTGTTCTCGATCTGATGTGATTGCTTATCAATGTTTGAATTCTTACTGTCTCTATTTAATTGATTGCATTTCTTTCTCCTTCAATGTTCGGTGATAGATTATCTTTGTCTTGCTTTCCCTTTTTGATGTGTGTGTCAGTTTTTGTTTGATCTGTAGGCTGATGTTGTACAATTGCGAGTATGGGGTTTTGATTATATAATCGATGATGAAGTTGGAACTTAGATTAATATTAGGTTTCTTTGACAGTTAAATGTAATAGGAAGATGTGTGCAAGCTGGCTTGGGAGTCATGGATGCAAAAAAAAAAAAAAAATCCATTAAGCAATCGTTAGAATTTTATTTAACCGTAGACCTCAATTCGTGCTAAATATATGAACTTACACCATGTTATATTCCATTTTTGGTAATCATATCTCTAATATGTTTATCGATGAGTTTCTTGATCGATTATAATTTATCTGCACTCACCCTAATTTTACATTGAATTTAGACTTCGAATTAGGCAAATCTTATATCGTGTGATTCCATGTTGTACAATTGCGAATACGGGTCTTGATTATGTAATTCGCTAAGCAATTATTGTTATTAGAAGTTTTTTAACTGATAAGCCTCCGATTTGTTGATTGGAAATCATATTTCTAGCAAGTTCATTGATGAGTCCCCAAGGGATGGCGCAGTGGTTGAAAACTTGGGCTTTGAGGGTATGCTCCCCTCAAGGTCCTGGGTTCAAGACTCATTTGTGACATTATTCCTTTGATGTTTCCGGTGCCTGACCTAAGGATGGATGTGGTTATTCTTGTTTCAAAAAGTAAGGTCATTGATGAGTGACTTGATTCTGCTATCACCCTAACTTTTACATATGACTTTAGACTTTGGACTTTGAATAAGAAAAATCTAATACTGTGGGTTTTTTTGAGTTAGCAAAGTATATAGAAGTTGGTTCATGTTTAGGGTGTTTCAAACTCTGTTCATGAGATCTCTAGTATCTGCTTATTGTTATGTGTGCCTATCCTAAACCTTATTAGTACAGGTGATCGTTGGCGGTGGTAGTGGTGGTGGTTTCATCGGTGGTGGTGCTGCTGCTTCTGCCCCTGCCGGAGGAGCTGCACCAGCAGCAGAAGCCCCAGTTGAGAAGAAGGAAGAAGTGAAGGAAGAGAGTGATGATGAAGATCTTGGTCTATCACTGTTTGATTAGTTGGTACAAGTACTTGTTATTTTTCATCAATCCCATGATATTAAGCACTCAACCTTTTTCTCTTCAGGGAATTATGTCTATGCATTTACTTGAATTTGCCAGATTAGTTACTGTCTTGTTAAGGACATGAAATTTTGCTTACTGACCTTTGTTAAATGATTGAGAATTAGATGTGTTCTTTTGGAAATTGTGTGTGAAATCTTCTTTCTGATTACCTTCATGGATCTATCTATTGTTTATTTAAGAGCTTTTTAGTTAGATAAGAAACAAAATAAAAAAGTAATATCAACTTCTAGGAATTAGAAGTTTGTGTATCATGAAATCTTCACAAAGAGATCTGACAAGGTACTTGCATTCTTTCTTTCCTCAATTGCCACAGGAGGACCCAAAATGCACTTGTACCCAGTGTTTTAAAAGGCGCGCCTAGGCTCAAGTCCCACCTTTTGCGCCTTAATTGTCCCAGGCCAGGCGCGTATAATAAGGCGCGCGCCTTATGGCGCCTTACGTGAAGCCCCAGGCGCCAAAAGGCACGCGCCTCGTGGGCTTTTTAATTTTCCTTTGCGCTTTTTGTATTTCAGATCCCCGTACTAGGTCATTCGAAGCGTGTGAAGGTTGATAGTTGAATATTATGTATGTTTTTATATATTATTCTTGGTTAAAACTTCATTTATGTCCATGCAAAATGTTTTTATTGTGTATACACACATATATATAAATT

mRNA sequence

TCGAAATCAACGAAAAGGAACGAGGGCAAAACAGTCAATTTGAATGGAATTAGGGTTTCTTCTCACAAAATAAAAACGAAACGCGAAGCCGCTGAAAAGAGAGCCTCTCATTTTTCTTCAACCATAATCCCAATTCTTAGATCCAACAATGGGAGTTTTCACCTTCGTTTGCCGGAGCGCCGGTGGAAAATGGACCGCCAAGCAGCATTCCGGCGACCTCGAAGGCTCCGCCGCCTCCACCTATGAGCTTCAGAGGGCACTCGTTCAGACAGCTCTCTCCGCCGATTCCTCCGGCGCCGTTCAGTCATCTTTCTCCTACATCACTCCCACCTCCGCCGTTTTTCAGGTGATCGTTGGCGGTGGTAGTGGTGGTGGTTTCATCGGTGGTGGTGCTGCTGCTTCTGCCCCTGCCGGAGGAGCTGCACCAGCAGCAGAAGCCCCAGTTGAGAAGAAGGAAGAAGTGAAGGAAGAGAGTGATGATGAAGATCTTGGTCTATCACTGTTTGATTAGTTGGTACAAGTACTTGTTATTTTTCATCAATCCCATGATATTAAGCACTCAACCTTTTTCTCTTCAGGGAATTATGTCTATGCATTTACTTGAATTTGCCAGATTAGTTACTGTCTTGTTAAGGACATGAAATTTTGCTTACTGACCTTTGTTAAATGATTGAGAATTAGATGTGTTCTTTTGGAAATTGTGTGTGAAATCTTCTTTCTGATTACCTTCATGGATCTATCTATTGTTTATTTAAGAGCTTTTTAGTTAGATAAGAAACAAAATAAAAAAGTAATATCAACTTCTAGGAATTAGAAGTTTGTGTATCATGAAATCTTCACAAAGAGATCTGACAAGGTACTTGCATTCTTTCTTTCCTCAATTGCCACAGGAGGACCCAAAATGCACTTGTACCCAGTGTTTTAAAAGGCGCGCCTAGGCTCAAGTCCCACCTTTTGCGCCTTAATTGTCCCAGGCCAGGCGCGTATAATAAGGCGCGCGCCTTATGGCGCCTTACGTGAAGCCCCAGGCGCCAAAAGGCACGCGCCTCGTGGGCTTTTTAATTTTCCTTTGCGCTTTTTGTATTTCAGATCCCCGTACTAGGTCATTCGAAGCGTGTGAAGGTTGATAGTTGAATATTATGTATGTTTTTATATATTATTCTTGGTTAAAACTTCATTTATGTCCATGCAAAATGTTTTTATTGTGTATACACACATATATATAAATT

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTTTGCCGGAGCGCCGGTGGAAAATGGACCGCCAAGCAGCATTCCGGCGACCTCGAAGGCTCCGCCGCCTCCACCTATGAGCTTCAGAGGGCACTCGTTCAGACAGCTCTCTCCGCCGATTCCTCCGGCGCCGTTCAGTCATCTTTCTCCTACATCACTCCCACCTCCGCCGTTTTTCAGGTGATCGTTGGCGGTGGTAGTGGTGGTGGTTTCATCGGTGGTGGTGCTGCTGCTTCTGCCCCTGCCGGAGGAGCTGCACCAGCAGCAGAAGCCCCAGTTGAGAAGAAGGAAGAAGTGAAGGAAGAGAGTGATGATGAAGATCTTGGTCTATCACTGTTTGATTAG

Protein sequence

MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITPTSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAPAAEAPVEKKEEVKEESDDEDLGLSLFD

Homology

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BLAST of Sed0001835 vs. NCBI nr
Match: XP_004148320.1 (60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_021210 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 3.7e-44
Identity = 105/121 (86.78%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTFVCRS+GGKWTA Q+SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAP-AAEAPVEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVIVGGGSGGGF  GG AA+APAGGAAP AAEAP EKKEEVKEESDDEDLGLSLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

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BLAST of Sed0001835 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa] >TYK01401.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 8.3e-44
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTFVCRS+GGKWTA Q+SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAP-AAEAPVEKKEEVKEESDDEDLGLSLF 120
           TSAVFQVIVGGG GGGFIGGGAAA APAGG AP AAEAP EKKEEVKEESDDEDLGLSLF
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGAAA-APAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Sed0001835 vs. NCBI nr
Match: XP_038889531.1 (60S acidic ribosomal protein P3-2 [Benincasa hispida])

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-43
Identity = 106/122 (86.89%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTFVCRS+GGKWTA Q+SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGSGGGFI-GGGAAASAPAGGAAP-AAEAPVEKKEEVKEESDDEDLGLSL 120
           TSAVFQVIVGGG GGGFI GGG AA+APAGG AP AAEAP EKKEEVKEESDDEDLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

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BLAST of Sed0001835 vs. NCBI nr
Match: XP_022153281.1 (60S acidic ribosomal protein P3-2 [Momordica charantia])

HSP 1 Score: 185.3 bits (469), Expect = 3.2e-43
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTFVCRS+G +WTAKQ+SGDLEGSAASTYELQR LVQTAL+ DSSG VQSSFSYI+P
Sbjct: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61  TSAVFQVIVGGGSGGGFI-GGGAAASAPAGGAAPAAEAPVEKKEEVKEESDDEDLGLSLF 120
           TSAVFQVI+GGG GGGFI GGGAAA+AP+GGAAPAAEAP EKKEE KEESDD DLGLSLF
Sbjct: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDD-DLGLSLF 120

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BLAST of Sed0001835 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >KAG6598882.1 60S acidic ribosomal protein P3-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029833.1 60S acidic ribosomal protein P3-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-42
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTF+CRS+GGKWTA Q+SGDLEGSA STY+LQR LVQ  LS D SG VQSSFSY+TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAP-AAEAPVEKKEEVKEESDDEDLGLSLF 120
           TSAVFQVI+GG SGGGFIGGG AA+APAGG AP AAEAP EKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

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BLAST of Sed0001835 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-32
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVF+FVC+S GG+WTAKQH GDLE SA+STY+LQR LVQTALSADSSG VQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAPAAEAPVEKKEEVKEESDDEDLGLSLF 120
           TSAVF V++GGG GGGF  GG AA+   GG   AA    E+K++ + E ++ D G  LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

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BLAST of Sed0001835 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-32
Identity = 83/121 (68.60%), Postives = 95/121 (78.51%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTFVC++ GG W+AKQH G+LE SA+STYELQR LVQ +LSADSSG VQSSFS ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAPAAEAPVEKKEEVKEESDDE--DLGLSL 120
           TSAVFQVIVGGG GGGF  GGAA+S   GGA  AA AP E  E+ KEES++E  D G  L
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASS--GGGAGEAAAAPKE-DEKKKEESEEEEGDFGFDL 118

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BLAST of Sed0001835 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-30
Identity = 79/120 (65.83%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGV+TFVCRS+G +WTAKQ  G+LE SAA+ YELQR LV  A +ADS+  VQSSFS ++P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAPAAEAPVEKKEEVKEESDDEDLGLSLFD 120
           +SAVFQVI+G   GG  IGGGAAA A +GGAA  A    EKKEE KEES+D DLG SLFD
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAASGGAAAEAPKAEEKKEEEKEESED-DLGFSLFD 119

[Close]

BLAST of Sed0001835 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 6.0e-29
Identity = 75/122 (61.48%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGV+TFVCR+ GG+WTAKQHSG++E SAA+ YELQR LV  A +ADS   VQSSFS +TP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  TSAVFQVIVGGGSGGGFI--GGGAAASAPAGGAAPAAEAPVEKKEEVKEESDDEDLGLSL 120
           +SAVFQVIVG   GG  +  GGG   +A +GGA  AAEAP E+K+E ++E  D+D+G SL
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGGA--AAEAPKEEKKEEEKEESDDDMGFSL 120

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BLAST of Sed0001835 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 105/121 (86.78%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTFVCRS+GGKWTA Q+SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAP-AAEAPVEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVIVGGGSGGGF  GG AA+APAGGAAP AAEAP EKKEEVKEESDDEDLGLSLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Sed0001835 vs. ExPASy TrEMBL
Match: A0A5D3BNN6 (60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00960 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.0e-44
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTFVCRS+GGKWTA Q+SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAP-AAEAPVEKKEEVKEESDDEDLGLSLF 120
           TSAVFQVIVGGG GGGFIGGGAAA APAGG AP AAEAP EKKEEVKEESDDEDLGLSLF
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGAAA-APAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Sed0001835 vs. ExPASy TrEMBL
Match: A0A1S3BRK9 (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.0e-44
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTFVCRS+GGKWTA Q+SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAP-AAEAPVEKKEEVKEESDDEDLGLSLF 120
           TSAVFQVIVGGG GGGFIGGGAAA APAGG AP AAEAP EKKEEVKEESDDEDLGLSLF
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGAAA-APAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Sed0001835 vs. ExPASy TrEMBL
Match: A0A6J1DK62 (60S acidic ribosomal protein P3-2 OS=Momordica charantia OX=3673 GN=LOC111020814 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTFVCRS+G +WTAKQ+SGDLEGSAASTYELQR LVQTAL+ DSSG VQSSFSYI+P
Sbjct: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61  TSAVFQVIVGGGSGGGFI-GGGAAASAPAGGAAPAAEAPVEKKEEVKEESDDEDLGLSLF 120
           TSAVFQVI+GGG GGGFI GGGAAA+AP+GGAAPAAEAP EKKEE KEESDD DLGLSLF
Sbjct: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAPAAEAPAEKKEEEKEESDD-DLGLSLF 120

[Close]

BLAST of Sed0001835 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.6e-43
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTF+CRS+GGKWTA Q+SGDLEGSA STY+LQR LVQ  LS D SG VQSSFSY+TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAP-AAEAPVEKKEEVKEESDDEDLGLSLF 120
           TSAVFQVI+GG SGGGFIGGG AA+APAGG AP AAEAP EKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of Sed0001835 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-33
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVF+FVC+S GG+WTAKQH GDLE SA+STY+LQR LVQTALSADSSG VQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAPAAEAPVEKKEEVKEESDDEDLGLSLF 120
           TSAVF V++GGG GGGF  GG AA+   GG   AA    E+K++ + E ++ D G  LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

[Close]

BLAST of Sed0001835 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-33
Identity = 83/121 (68.60%), Postives = 95/121 (78.51%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVFTFVC++ GG W+AKQH G+LE SA+STYELQR LVQ +LSADSSG VQSSFS ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAPAAEAPVEKKEEVKEESDDE--DLGLSL 120
           TSAVFQVIVGGG GGGF  GGAA+S   GGA  AA AP E  E+ KEES++E  D G  L
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASS--GGGAGEAAAAPKE-DEKKKEESEEEEGDFGFDL 118

[Close]

BLAST of Sed0001835 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-32
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 1   MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
           MGVF+FVC+S GG+WTAKQH GDLE SA+STY+LQR LVQTALSADSSG VQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGSGGGFIGGGAAASAPAGGAAPAAEAPVEKKEEVKEESDDEDLGLSLF 120
           TSAVF V++GGG GGGF  GG AA+   GG   AA    E+K++ + E ++ D G  LF
Sbjct: 61  TSAVF-VVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 118

[Close]

BLAST of Sed0001835 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 124.0 bits (310), Expect = 8.1e-29
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MGVFTFVCRSAGGKWTAKQHSGDLEGSAASTYELQRALVQTALSADSSGAVQSSFSYITP 60
          MGVF+FVC+S GG+WTAKQH GDLE SA+STY+LQR LVQTALSADSSG VQSSFS ++P
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 TSAVFQVIVGGGSGGGFIGGG 82
          TSAVF V++GGG GGGF  GG
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGG 81

The following BLAST results are available for this feature:

BLAST of Sed0001835 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148320.1	3.7e-44	86.78	60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical pro...	[more]
XP_008451467.1	8.3e-44	88.43	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S ac...	[more]
XP_038889531.1	1.9e-43	86.89	60S acidic ribosomal protein P3-2 [Benincasa hispida]	[more]
XP_022153281.1	3.2e-43	85.95	60S acidic ribosomal protein P3-2 [Momordica charantia]	[more]
XP_022929782.1	1.6e-42	81.82	60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S ...	[more]

BLAST of Sed0001835 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVC9	2.0e-32	63.03	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
Q9SVZ6	2.6e-32	68.60	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]
P56724	1.9e-30	65.83	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
O24413	6.0e-29	61.48	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]

BLAST of Sed0001835 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB2	1.8e-44	86.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]
A0A5D3BNN6	4.0e-44	88.43	60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BRK9	4.0e-44	88.43	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]
A0A6J1DK62	1.5e-43	85.95	60S acidic ribosomal protein P3-2 OS=Momordica charantia OX=3673 GN=LOC111020814...	[more]
A0A6J1KB28	7.6e-43	81.82	60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114922...	[more]

BLAST of Sed0001835 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.1	1.4e-33	63.03	60S acidic ribosomal protein family	[more]
AT4G25890.1	1.9e-33	68.60	60S acidic ribosomal protein family	[more]
AT5G57290.3	2.0e-32	63.03	60S acidic ribosomal protein family	[more]
AT5G57290.2	8.1e-29	76.54	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 67..119 e-value: 2.9E-8 score: 34.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..120
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001835.2	Sed0001835.2	mRNA
Sed0001835.1	Sed0001835.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome