Sed0000466 (gene) Chayote v1

Overview


Name	Sed0000466
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG06: 4948806 .. 4951974 (+)
RNA-Seq Expression	Sed0000466
Synteny	Sed0000466

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTTTCGGACTTTAAGAACTGTATTGATTCTAAAACCCTAAAACTCTCAAAGATCATTTTATTCACTTCTCTCGTTCATCGCTTCCCGATTGCTTATTTCTCCGGTCACTCTCCGTCGTGTTCTATCAATGCCCGATTCGATTCCGAATTCTTGAAGGTAATATCTCTGATTTTGTTCGTTTGATTTGATTTTTTCTTCTTTTTCTCCCTATTTATGGTTTTGTTTGATTTTGATGGGAACGTTTAGATGACAAATTGGTGATAGACGCTGTACCAAAGAACACATTTCCTCACATTCGCATTGCATTATTCAGAATCTCACCATTGTTGAATTGGTATGTACTTTCTCCCCTCATTTCTTCAATCTTTCCCTAGATTCTTGCATTTTTCAGTTTCTGTTTAATTGTATGAAGACTCTACGATTTTGTGTTCGGTATTCTAGTTTCAGCAATTGGTGTTTGTTTCGCCTTTTCTGTAATGCGGAAGCTTAAATTGTAGCGTTGGTGTTCTTAATTTCTTGAACTTGTGCATTCACTGCGGAAAAAGATTTAATGTTCTAATTGACTGCATGTTTGAGGATCTTATCTCTTTGATTGCTCCTTTTGGATTTGTTGTTCGTAATTAGCTTGAACTGTCTATTGTAAAATGGTGCAGAATCGAATCGGATGATTTGAGTTTGTTAATTGCGTGGTTGTATTTCTATATCATCAAGATTTGTGCGGATTTTCATCTATGGAATGTGTTGTTAGATCGTGGTGAAGAGAGGACGGATACCAATTCCTTTTTTGAAATTTTCTCATTAGTTTTCGGGTTCGTTTCGAGGAAAAAGCAGCGTCTATCTCCTTCCGCGCTGTTCTTTCCCGTCTTTCTTTGTATATTTTACTTAATTCTTTGGTACAAGAATTTTTCAGGTTCGCCTCAGCCCACGAGTAGCAAGAATTTTTCCCCTAGGCTTCCCGTTGATGATGATGGAAAATTAGTGGAAGATATGCATCCTCTAATCCATCTTCCCCAGAAAATGCTGAAACCTTTAGCTCTCAAATATGTCATCCAAAAAATCTCAATCGACTATGCCAAATGCTCTTTCAATGTCAAGTTTTAGGACCAAACCCTTCTTATGTCTTCTATCCCATTCATCAATAAGTTCATTTGCAATGAGGATCACATCAAGAATTTGTCTGTTACTCACAAAAGCAGATTGATAATGGGTAATAGTGTATGGTAGAACAAATTTAAGTCTTTCAGGGAGCACTCTAGCAATCACCTTGTAGATGCAAGTGGTTAAACTAATTGGCCTGTTTTGCTTCTTTTGGGGATAAGACAGATATAAGTTTCATTTAAGACTAGCATTAATCTTACTGTTTTCAAAAACATCATTGTACACAGTCAGAATATCTTTCTTAAGAGTGTTCCGTGTTTTTTTAAAAAATTATGCCGTGAACCCATCTGGCCTTGGTGTCTTGTTGGTACCCAATTCATTAACTGCTCTCAGGATCTCTGCTTCTATAAAAGGTGTCTCAAGTGGATTGCTTTGTTGATTAGAAATGGGATCTCATTCCTCAAGAATTGGAAAGGGGGCTCTCTTCTGGTTCTTAGTGTAAAGTTTCTTGTAGAAGGAAATAAATTAATTCTCGATATCATGGTTAGTGACCAAGCTGATGCCTTGTTGAGAAATAACTTCCATTATCGTACTCCTTTTTCTATTGGCAACAACACATCTATGAAAGAAGCTAGTGTTCTCCTTGCCAAGAGCAAGCCAATGTGCTTCACTTCTTTGAATCCATATGAATTCTTCCCTAGCTAATGTAAATGAGAAAGAAGCTACTGTTTTTTGCATCATTTGGTATTGCATTTTTTGGACTATACTTTATATTGTATTGTTCGCATTCTCATCCAGATTTAGATTAGGAAAGATTAGAAATTTGAATGAAACTTTATTGAATACGGTTTGATATAATTACATTTACTTTTGTAGGTAGTTTTTCATGGCAACGATCTTAGCATGTATTTTTCTTGAGGAAAAGGTCATCCTTCACCTAAAGAATGTGCTCGGTTGTTTGCTGGGGGTTTCAGATATATGTGAATGTAGATTTCAACCGGACAAATTATATCTCATTGTTTACCAATTTGAGTCTCAACCTTCTATCCATGTCCAATTACCTGCGATCTTTTTCAAGGAACATTATTTTTGTAATCAAACAACTTGTGGGCATTTTAATATGTTAAAATTATTCTGCAGTCTCATAGACCAAAAAACACCCATTTCTTTGCTTTTGGAACGATATGAAAATTCATCTTATTTGAGATTCGATCATGTGTTTGGTAAGTGATTATTATTATTATTATTATTTTTTGAGTTTTCATTTAATGTAATTTCTAAAATTATTAGTTATTTTCCACTACTTTCAGGCAGGACTACATTGTTCACGGAAGTTCCAATTCCTGCGCATGTAGACTTGGAAGCGAATTCGAATATCAACTCATTTGTTAGCATACATCCTAAAAAGTTCCGAGATATTTTGCTCCTACTCGGTCATGAGCTTGCTGTGGAAACAATTTCAAATGGTAAAATCCTAAACCCTAAACATTGTAACCTTGTTAGAAAGATTTGTGCTCACCATCTCATTTACAGTTCGGCTCACCATCACTCACGATTCAGTCACGTTCTCGACTCCCATAAATGAGTATACGATTGCTAATGAGGTAAGATCCGGAGTGTTTGTTTGAAATTAATGTTCCAAATTTCAAATTTGATAGCTTCTTTTAATCAAATGCTATTATTTATCTTATGCAGCCAGAATCTCTCACTGTATTCGGCGTGCAGACCAATGAAGTAAGGACATTGATACTAGATTTACAGCTCCGGAGGTTTCATGCTTTAGTGACCACTAATGATGGTCCTATGGTAAACATAGTAAATGGAAGTACCACTTGCAAGAAAGGTCGGATTGTTATGTCCTTTCTCAATGGGGTTGTAATTTCCACTCATCCTCCGTTGCCTTGAACATAGGAATGCTTTGCTCTTACATGGGAGTATTTTTTTGTAAGTTCCATTTAGACCTATTGCATGTTCTTTGTTTTTCTTTGAAATGCATTTGAAAGTCTCATGGGCACAAGTCTTTGTAATTATTTTATACAATGACTTCATTTTTGTTACTCTAAAAAC

mRNA sequence

CTTCTTTTCGGACTTTAAGAACTGTATTGATTCTAAAACCCTAAAACTCTCAAAGATCATTTTATTCACTTCTCTCGTTCATCGCTTCCCGATTGCTTATTTCTCCGGTCACTCTCCGTCGTGTTCTATCAATGCCCGATTCGATTCCGAATTCTTGAAGATGACAAATTGGTGATAGACGCTGTACCAAAGAACACATTTCCTCACATTCGCATTGCATTATTCAGAATCTCACCATTGTTGAATTGGTAGTTTTTCATGGCAACGATCTTAGCATGTATTTTTCTTGAGGAAAAGGTCATCCTTCACCTAAAGAATGTGCTCGGTTGTTTGCTGGGGGTTTCAGATATATGTGAATGTAGATTTCAACCGGACAAATTATATCTCATTGTTTACCAATTTGAGTCTCAACCTTCTATCCATGTCCAATTACCTGCGATCTTTTTCAAGGAACATTATTTTTGTAATCAAACAACTTGTGGGCATTTTAATATGTTAAAATTATTCTGCAGTCTCATAGACCAAAAAACACCCATTTCTTTGCTTTTGGAACGATATGAAAATTCATCTTATTTGAGATTCGATCATGTGTTTGGCAGGACTACATTGTTCACGGAAGTTCCAATTCCTGCGCATGTAGACTTGGAAGCGAATTCGAATATCAACTCATTTGTTAGCATACATCCTAAAAAGTTCCGAGATATTTTGCTCCTACTCGGTCATGAGCTTGCTGTGGAAACAATTTCAAATGTTCGGCTCACCATCACTCACGATTCAGTCACGTTCTCGACTCCCATAAATGAGTATACGATTGCTAATGAGCCAGAATCTCTCACTGTATTCGGCGTGCAGACCAATGAAGTAAGGACATTGATACTAGATTTACAGCTCCGGAGGTTTCATGCTTTAGTGACCACTAATGATGGTCCTATGGTAAACATAGTAAATGGAAGTACCACTTGCAAGAAAGGTCGGATTGTTATGTCCTTTCTCAATGGGGTTGTAATTTCCACTCATCCTCCGTTGCCTTGAACATAGGAATGCTTTGCTCTTACATGGGAGTATTTTTTTGTAAGTTCCATTTAGACCTATTGCATGTTCTTTGTTTTTCTTTGAAATGCATTTGAAAGTCTCATGGGCACAAGTCTTTGTAATTATTTTATACAATGACTTCATTTTTGTTACTCTAAAAAC

Coding sequence (CDS)

ATGGCAACGATCTTAGCATGTATTTTTCTTGAGGAAAAGGTCATCCTTCACCTAAAGAATGTGCTCGGTTGTTTGCTGGGGGTTTCAGATATATGTGAATGTAGATTTCAACCGGACAAATTATATCTCATTGTTTACCAATTTGAGTCTCAACCTTCTATCCATGTCCAATTACCTGCGATCTTTTTCAAGGAACATTATTTTTGTAATCAAACAACTTGTGGGCATTTTAATATGTTAAAATTATTCTGCAGTCTCATAGACCAAAAAACACCCATTTCTTTGCTTTTGGAACGATATGAAAATTCATCTTATTTGAGATTCGATCATGTGTTTGGCAGGACTACATTGTTCACGGAAGTTCCAATTCCTGCGCATGTAGACTTGGAAGCGAATTCGAATATCAACTCATTTGTTAGCATACATCCTAAAAAGTTCCGAGATATTTTGCTCCTACTCGGTCATGAGCTTGCTGTGGAAACAATTTCAAATGTTCGGCTCACCATCACTCACGATTCAGTCACGTTCTCGACTCCCATAAATGAGTATACGATTGCTAATGAGCCAGAATCTCTCACTGTATTCGGCGTGCAGACCAATGAAGTAAGGACATTGATACTAGATTTACAGCTCCGGAGGTTTCATGCTTTAGTGACCACTAATGATGGTCCTATGGTAAACATAGTAAATGGAAGTACCACTTGCAAGAAAGGTCGGATTGTTATGTCCTTTCTCAATGGGGTTGTAATTTCCACTCATCCTCCGTTGCCTTGA

Protein sequence

MATILACIFLEEKVILHLKNVLGCLLGVSDICECRFQPDKLYLIVYQFESQPSIHVQLPAIFFKEHYFCNQTTCGHFNMLKLFCSLIDQKTPISLLLERYENSSYLRFDHVFGRTTLFTEVPIPAHVDLEANSNINSFVSIHPKKFRDILLLLGHELAVETISNVRLTITHDSVTFSTPINEYTIANEPESLTVFGVQTNEVRTLILDLQLRRFHALVTTNDGPMVNIVNGSTTCKKGRIVMSFLNGVVISTHPPLP

Homology

The following BLAST results are available for this feature:

BLAST of Sed0000466 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0000466 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0000466 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0000466 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 11..211 e-value: 9.1E-6 score: 27.1
IPR006573	Neuralized homology repeat (NHR) domain	PROSITE	PS51065	NHR	coord: 211..257 score: 9.294677

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000466.1	Sed0000466.1	mRNA