Sed0000437 (gene) Chayote v1

Overview


Name	Sed0000437
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Glycine-rich RNA-binding protein 2
Location	LG12: 30951967 .. 30955822 (-)
RNA-Seq Expression	Sed0000437
Synteny	Sed0000437

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTCTCTCGCTTTGCTCCATATATTCTGATCATAAATCCGCTTCACTGATCATAAATCTTGCTAGGGTTTTAGGATCGCAACAAAAGTGAAGAAGAAGAAGAAGGTTCGTTCTCAAGCAAGCCTTCAACGCACTTCATCGTCTCTGTTTTGATTTCTCTATCTTTTACTATATGTATTTGCCTTACTGTTTGAATTACTTCAATAATCGTTGAAATTGTTCGTATTGACGCTGCTGGACCATTTGGTCCATGTTTCCTTACTATTATCGGAGTTGTTTATTTATTTTTAAATTTTTTTAAAAACTTTTTATGGTTTATGAGATTTGGTAACTGGAGGAAATTATGGCGGAAGATAGTCGCCGAGTCTAATAATCTTCCATTTTTTTGTGTTTGAACTGTTCATCATGGGTTGTTTATTGTTCTCGTGTTGTTTTGGTTATTGGGTTTCATTTTTTATGGCATATGAACTGGTATTGGTGGTTAAGGATCGTCTTGTTGAGTTTTGAATGTTCTTGTTAACCACCGAAACAGAGCTTATGCACGTTGGCGCATAAAGGGAAAATTATGAGCGTTTTAACGTATTTTCACCCCGTTGGTGCTAAATTTTTATGGTCTCTTGTATAGTTGTTTTAAGAATGTTCTGGCGATGAGTGTCCCCACGGGGCGGGCTCGTTGGTAGAAGTTTAAGTCTCTTAGAGGATGTTTGTGGGAAGGGGTATGGGGAGAATGAGAATGAGGGTCAGAATAGGAAGGGGAATGAACAAGGAGAGAATGATTACTTGTGTTTGAGATGAAAAAAATAATTATGCGGAAATGATTATTTGTGTTTAGGGTGAAGAAAATAATTATGGGGAAAATAAAATAATGAGTATGACGAGAGTAGTGTTGCAATGTATAAAAATTTGTTGTGGGGAGCATAAAATGTAGTTAGGAGGAGAATAAAAAGGTGGTTTTGGAAAAACGCCATTATGGGGTTACCGAGAATCGTCTCCATTCCCATCCTCCCTATTTATTCTTGGTGGCACAAACATACCCTAAGGCATTTTACTCGTTTTAAAACCACTAGTGAGCTTAATTAGAAAATTACTTTCTCGAATTCAGACCATGGGATGGGTGTGGATGCCCTGTATATTATAGTGTAGCAAAGCTTCAATTCCCGGTTATAATAAAAAGGAGGAAAAAAAGTTCTGGCTATGTGTATGTGAACCGAGCTGTAAAAGCTCCAAAGTTAACTGTATTTGGAGGCTAACCGAGCTGTTTTCATTATTGCCTATGAATCTATGATACCGTGGAAATATGTTTTTATTGAATCTTCGTTATTCACTTCTTTCAGGGGGCTTGAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGACGATTGGATCGGATTTGCAGGCTTCCCGTTTTTCTTTCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCCAAACTTTTTATTGGAGGTTCTCCAAGAACAGTTGTCTTTTTCATTAAGTATTACGAATTCTCACATTTCTTTTTCTTCATCTCGTGGCTGTACGCATGTTTCTGATGCAGGTATTTCATACGGCATTGATGATCAAAGTCTGAGGGAAGCATTTGCTAAATATGGGGAAGTAATTGAAGGTATCACCATTCACCAAACTAAGATTTATTCTTGGGCAATAGAAATGTAATATTGAATAAGATAACTTTTGCAACCTATATGATCGTATCTGCTTTATGAATTATGATTCTATGGGGGGTTGGTGCTGGATACAATCATTCTACTTAATTTGCCAGTGGATTGTATTTAGTTTTCGTTTCTTGTTAAAAATAAAAAATAAATGTTGGATTTCTTGTTTACCCTTTTTTTCGTTTTCCCCTGTGGCAGCTAGGGTCATTACTGACCGAGAAACTGGGAGATCCAGAGGTTTTGGATTTGTGACTTTTAACTCCAGTGAGGAGGCATCTAGTGCCATCCAGGCATTGGATGGGCAGGTAATGTTTCAATCCCCCTGTCGATTCAGTGTGATGATTATAAAGGATGAAGGATAGAAACTAGAAAGTGTGAAGATATTGAAGTTAATGGCAATAGTTATATCATCATACTTTGTTATACTTTTTTTGAAATAAGGTAACCACGTCCATTCCTAGGTCAGGTGCCGGAGACATCAAATAAGTAATATCACAGGTAAGTTTCGAACTTGGGATCTTGAGGGGAGCATACCCTCAAAACCCAAGTCTTCAACCACTGTGCCATCTTTGGGGACCGTCATACTTTGTTATACTAATATCATTAGTTATATACTGATGTGAAGTGTTTTTGGGAGTTCTAAGGCTATTACTTCTTTATATATATATAATGTGTTGTATATTGGAGGCTTGTCCTGATTTCTGTTGTTAATGTGGGCAGTCACTCCTCATTCATGTAAGCACAGCCGTTTCTCTTTTTTATTCCCAATTATTAGGTCTGGTATGTTATGGTGCAAAGTTGTCCACTGGCATTTTCTTTTACAAAACCTTAAAAACAAGGCCAGGGATTAACAGGATATTGAATTCGGGACTTGTTGGCCTTTTTTTAAAAATTTTAATTTTAGTGCAAGTTGGGGGAGGCCCCGAGGGGGACCACAAACCCAAAGAAGGTACTAGTGCTCTCAAATTAATAAGAGCCAAAGCCAACAAGAGCAGTAGCTCAGTTGCATTAGTGTACACCTAATGACTATGGGGTCTTAGGTTTGAGTGCCCCCCTACCCCCTACCCCCTACCCTCAATTGTGTTGTAATCTCAAAAGAAAAAATAATGAGAGCCAAATACCGATTATTGGGATCGAACTTGTGATCACGGTGTTGAACTAGATTACTACCAAACAATGAAACCATCAAGTTACCGTTCCTTTTCGGTACTTGTTTGGCCTTCGAACCTATGAGAAAGAAGCATATTTGAAATTAATTGACTAACTTATGGATGGAGATGCATTTTTTAGATGATTTTATTTTAGTTAAAATTATTTAAACTGAAATTGTCTAATGGTTTGGGTTTACGCTTCATTTTATCTGAAAACAGGATCTTCATGGTCGTCGGGTGCGTGTGGATTATGCTACTGGTGGAAGTCGTGGTGGGGGTGGTGGCTATGGTGGCGGTGGCTATGGTAGTGGAGCTGGAGGCTATGGTGGTGGCGGTTATGGTGGTAGCAGCTATGGTGGCGGCAGTTATGGCAGCGGTGGGAATGGTGGCTATGGTGATGCAAGTGGTGGATATAATTCTGGAGGTAACTACGCGAGCAATTTTGGTGGTGGCTCTGGTGGGAATGATTCTGGCTACAATGCTGCTAGCAATTTTGGTGCCGGAAACACTTACGGAAGTGGAACTAGTGCTGGTTTTGGTACCAGCAATGAAAACTTCAACAACAGTGGCAGTGGCAGTGGCGGCGACTATTTTGCCAACAATGGGCCTGATGCCAGCTCTGGTTTTGAGTATCAATCTCGCAACAACGATACAAATGCCATGAATGCATCTGGAGATCAAGGCCTAGGGGAGCTTATGGAAGCGAGCGGTTCGCACGAAGACGATGATGCAGATGACTTTGCTAAAAGAGCCTGATGATAGTATATACTTCTTCCAGCATTTTTGGTTATGGCCATGTAGATTTTCTTGCATTCTCTTCTACTGAACATCGACATTGTTGGACCTGCCTGCCTCAATTATCTGTGACTTTTCCTATTGTGGTTTCTCAAATGAAAAATAAGTTTTGTCCAAGCTCTATTATAAGGTAGCTGATCAATCATATTATCATCCATATTCACATTTATACTACACTTCTATGGCCAAATAATATAATATTCCAAC

mRNA sequence

GGTTTCTCTCGCTTTGCTCCATATATTCTGATCATAAATCCGCTTCACTGATCATAAATCTTGCTAGGGTTTTAGGATCGCAACAAAAGTGAAGAAGAAGAAGAAGGGGGCTTGAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGACGATTGGATCGGATTTGCAGGCTTCCCGTTTTTCTTTCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCCAAACTTTTTATTGGAGGTATTTCATACGGCATTGATGATCAAAGTCTGAGGGAAGCATTTGCTAAATATGGGGAAGTAATTGAAGCTAGGGTCATTACTGACCGAGAAACTGGGAGATCCAGAGGTTTTGGATTTGTGACTTTTAACTCCAGTGAGGAGGCATCTAGTGCCATCCAGGCATTGGATGGGCAGGATCTTCATGGTCGTCGGGTGCGTGTGGATTATGCTACTGGTGGAAGTCGTGGTGGGGGTGGTGGCTATGGTGGCGGTGGCTATGGTAGTGGAGCTGGAGGCTATGGTGGTGGCGGTTATGGTGGTAGCAGCTATGGTGGCGGCAGTTATGGCAGCGGTGGGAATGGTGGCTATGGTGATGCAAGTGGTGGATATAATTCTGGAGGTAACTACGCGAGCAATTTTGGTGGTGGCTCTGGTGGGAATGATTCTGGCTACAATGCTGCTAGCAATTTTGGTGCCGGAAACACTTACGGAAGTGGAACTAGTGCTGGTTTTGGTACCAGCAATGAAAACTTCAACAACAGTGGCAGTGGCAGTGGCGGCGACTATTTTGCCAACAATGGGCCTGATGCCAGCTCTGGTTTTGAGTATCAATCTCGCAACAACGATACAAATGCCATGAATGCATCTGGAGATCAAGGCCTAGGGGAGCTTATGGAAGCGAGCGGTTCGCACGAAGACGATGATGCAGATGACTTTGCTAAAAGAGCCTGATGATAGTATATACTTCTTCCAGCATTTTTGGTTATGGCCATGTAGATTTTCTTGCATTCTCTTCTACTGAACATCGACATTGTTGGACCTGCCTGCCTCAATTATCTGTGACTTTTCCTATTGTGGTTTCTCAAATGAAAAATAAGTTTTGTCCAAGCTCTATTATAAGGTAGCTGATCAATCATATTATCATCCATATTCACATTTATACTACACTTCTATGGCCAAATAATATAATATTCCAAC

Coding sequence (CDS)

ATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGACGATTGGATCGGATTTGCAGGCTTCCCGTTTTTCTTTCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCCAAACTTTTTATTGGAGGTATTTCATACGGCATTGATGATCAAAGTCTGAGGGAAGCATTTGCTAAATATGGGGAAGTAATTGAAGCTAGGGTCATTACTGACCGAGAAACTGGGAGATCCAGAGGTTTTGGATTTGTGACTTTTAACTCCAGTGAGGAGGCATCTAGTGCCATCCAGGCATTGGATGGGCAGGATCTTCATGGTCGTCGGGTGCGTGTGGATTATGCTACTGGTGGAAGTCGTGGTGGGGGTGGTGGCTATGGTGGCGGTGGCTATGGTAGTGGAGCTGGAGGCTATGGTGGTGGCGGTTATGGTGGTAGCAGCTATGGTGGCGGCAGTTATGGCAGCGGTGGGAATGGTGGCTATGGTGATGCAAGTGGTGGATATAATTCTGGAGGTAACTACGCGAGCAATTTTGGTGGTGGCTCTGGTGGGAATGATTCTGGCTACAATGCTGCTAGCAATTTTGGTGCCGGAAACACTTACGGAAGTGGAACTAGTGCTGGTTTTGGTACCAGCAATGAAAACTTCAACAACAGTGGCAGTGGCAGTGGCGGCGACTATTTTGCCAACAATGGGCCTGATGCCAGCTCTGGTTTTGAGTATCAATCTCGCAACAACGATACAAATGCCATGAATGCATCTGGAGATCAAGGCCTAGGGGAGCTTATGGAAGCGAGCGGTTCGCACGAAGACGATGATGCAGATGACTTTGCTAAAAGAGCCTGA

Protein sequence

MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLREAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYATGGSRGGGGGYGGGGYGSGAGGYGGGGYGGSSYGGGSYGSGGNGGYGDASGGYNSGGNYASNFGGGSGGNDSGYNAASNFGAGNTYGSGTSAGFGTSNENFNNSGSGSGGDYFANNGPDASSGFEYQSRNNDTNAMNASGDQGLGELMEASGSHEDDDADDFAKRA

Homology

[Close]

BLAST of Sed0000437 vs. NCBI nr
Match: KAG7023294.1 (Glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.7 bits (792), Expect = 2.6e-80
Identity = 214/322 (66.46%), Postives = 235/322 (72.98%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVGNILRQGANK  G +LQA   S  QAVRWMSSMQSSK+FIGGISY  DDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEVIEARVI DRETGRSRGFGFVT+ SSEEASSAIQALDGQDLHGRRVRV+YA 
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 --------GGSRGGGGGYGGGGYGSGAGGYGGGGYGGS--------SYGGGSYGSG--GN 180
                   GG  GGGGGYGGGGYG G GGYGGGGYGGS        SYGGG+YG G  G 
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGYGGSGSYGGGGGSYGGGAYGGGVSGG 180

Query: 181 GGYGDASG-----GYNSGGNYASNFGGGS---------GGNDSGYNAASNFGAGNTYGSG 240
           GGYG  SG     G+++G NY+S+FG GS         GGND+G NAASNF +GNT+GSG
Sbjct: 181 GGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGSG 240

Query: 241 TSAGFGTSNENFNNSGSGSGGDYFANNGPDASSGF-----EYQSRNNDTNAMNASGDQGL 286
           TSA F T+  N        GGDYFAN+G DASSGF       Q  +N+ N +NASGDQGL
Sbjct: 241 TSADFDTNVSN-------GGGDYFANSGSDASSGFGGYTGGDQLGSNEANTLNASGDQGL 300

[Close]

BLAST of Sed0000437 vs. NCBI nr
Match: XP_022921902.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 306.6 bits (784), Expect = 2.2e-79
Identity = 213/323 (65.94%), Postives = 234/323 (72.45%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVGNILRQGANK  G + QA   S  QAVRWMSSMQSSK+FIGGISY  DDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEVIEARVI DRETGRSRGFGFVT+ SSEEASSAIQALDGQDLHGRRVRV+YA 
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 --------GGSRGGGGGYGGGGYGSGAGGYGGG---------GYGGSSYGGGSYGSGGN- 180
                   GG  GGGGGYGGGGYG G GGYGGG         G GG SYGGGSYG GG+ 
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180

Query: 181 -GGYGDASG-----GYNSGGNYASNFGGGS---------GGNDSGYNAASNFGAGNTYGS 240
            GGYG  SG     G+++G NY+S+FG GS         GGND+G NAASNF +GNT+GS
Sbjct: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240

Query: 241 GTSAGFGTSNENFNNSGSGSGGDYFANNGPDASSGF-----EYQSRNNDTNAMNASGDQG 286
           GTSAGF T+  N        GGDYFAN+G DASSGF       Q  +N+ N +NASGDQG
Sbjct: 241 GTSAGFDTNVSN-------GGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQG 300

[Close]

BLAST of Sed0000437 vs. NCBI nr
Match: KAG6589603.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.8 bits (782), Expect = 3.8e-79
Identity = 213/328 (64.94%), Postives = 234/328 (71.34%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVGNILRQGANK  G +LQA   S  QAVRWMSSMQSSK+FIGGISY  DDQSLR
Sbjct: 15  MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 74

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEVIEARVI DRETGRSRGFGFVT+ SSEEASSAIQALDGQDLHGRRVRV+YA 
Sbjct: 75  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 134

Query: 121 --------GGSRGGGGGYGGGGYGSGAGGYGGGGY--------------GGSSYGGGSYG 180
                   GG  GGGGGYGGGGYG G GGYGGGGY              GG SYGGG+YG
Sbjct: 135 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGYGGGGGYGGGGSYGGGGGSYGGGAYG 194

Query: 181 SG--GNGGYGDASG-----GYNSGGNYASNFGGGS---------GGNDSGYNAASNFGAG 240
            G  G GGYG  SG     G+++G NY+S+FG GS         GGND+G NAASNF +G
Sbjct: 195 GGVSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASG 254

Query: 241 NTYGSGTSAGFGTSNENFNNSGSGSGGDYFANNGPDASSGF-----EYQSRNNDTNAMNA 286
           NT+GSGTSA F T+  N        GGDYFAN+G DASSGF       Q  +N+ N +NA
Sbjct: 255 NTFGSGTSADFDTNVSN-------GGGDYFANSGSDASSGFGGYTGGDQLGSNEANTLNA 314

[Close]

BLAST of Sed0000437 vs. NCBI nr
Match: XP_022134612.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Momordica charantia])

HSP 1 Score: 303.1 bits (775), Expect = 2.5e-78
Identity = 214/316 (67.72%), Postives = 234/316 (74.05%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVGNILRQGANK +GSD QAS  S CQAVRWMSSMQSSKLFIGGISYG DDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEVIEARVI DRETGRSRGFGFVT+ SSEEASSAIQALDGQDLHGRRVRV+YA 
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 GGSRG-GGGGYGGGGYGSGAGGYGGGGYGGSS--YGGGSYGSGG---------------- 180
             SRG GGGGYGGGGYG G+GGYGGGGYGG S  YGGG YG GG                
Sbjct: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG 180

Query: 181 -NGGYGDASG--GYNSGGNYASN------FGGGSGGNDSGY-NAASNFGAGNTYGSGTSA 240
             GGYGD SG  GYN+ GN AS+       GGG GGND+GY NAASN   GNTY SG +A
Sbjct: 181 SGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASGATA 240

Query: 241 GFGTSNENFN-NSGSGSGGDYFANNGPDASSGFEYQSRNNDTNAMN-ASGDQGLGELMEA 286
           GFGT + N+N   G G G DYFA++G   S G ++ S  N+TN  N ASGDQ  GE ++ 
Sbjct: 241 GFGTGSGNYNVAGGDGGGNDYFASSG--YSGGDQFSS--NETNTANAASGDQDPGEQLDG 300

[Close]

BLAST of Sed0000437 vs. NCBI nr
Match: XP_023516049.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.4 bits (768), Expect = 1.6e-77
Identity = 211/324 (65.12%), Postives = 234/324 (72.22%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVGNILRQGANK  G +LQA   S  QAVRWMSSMQSSK+F+GGISY  DDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFVGGISYNTDDQSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEVIEARVI DRETGRSRGFGFVT+ SSEEASSAIQALDGQDLHGRRVRV+YA 
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 GGSRG-GGGGY--GGGGYGSGAGGYGGGGY---------GGSSYGGGSYGSG-------- 180
             SRG GGGGY  GGGGYG G GGYGGG Y         GG SYGGG+YG G        
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGGGSYGGGAYGGGGAYGGGGS 180

Query: 181 GNGGYGDASGG-----YNSGGNYASNFGGGS---------GGNDSGYNAASNFGAGNTYG 240
           G GGYG  SGG     +++G NY+S+FG GS         GGND+G NAASNF +GNT+G
Sbjct: 181 GGGGYGGESGGGFGSVFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFG 240

Query: 241 SGTSAGFGTSNENFNNSGSGSGGDYFANNGPDASSGF-----EYQSRNNDTNAMNASGDQ 286
           SGTSAGF T+  N        GGDYFAN+G DASSGF       Q  +N+ + +NASGDQ
Sbjct: 241 SGTSAGFDTNVSN-------GGGDYFANSGSDASSGFGGYTGGDQFGSNEADTLNASGDQ 300

[Close]

BLAST of Sed0000437 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-44
Identity = 159/318 (50.00%), Postives = 193/318 (60.69%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSK GNIL+Q  NK + + +  S  S  QA+R MS   SSKLFIGG++Y +D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEV++ RVI DRETGRSRGFGFVTF SSE ASSAIQALDG+DLHGR V+V+YA 
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA- 120

Query: 121 GGSRGGGGGYGGGGYGSGAGGYGGGGYGGSSYGGGSYGSGGNGGYGDASGGY--NSGGNY 180
              R  GGG+GGGGYG G GGYGG G     YGGG+ G GG+GGYG  +GGY  NSGG Y
Sbjct: 121 -NDRTSGGGFGGGGYGGGGGGYGGSG----GYGGGAGGYGGSGGYGGGAGGYGGNSGGGY 180

Query: 181 ASNFGGGSGGNDS---------------GYNAASNFG-AGNTYGSGTSAGFGTSNENFNN 240
             N  GG GG+ +               GY ++  FG +GNTYG G+SA  G   +   +
Sbjct: 181 GGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGFGSSGNTYGEGSSASAGAVGDYNGS 240

Query: 241 SGSGSGGDYFANNGPDA------SSGFEYQSRNNDTNAMNASGDQGLGE----LMEASGS 286
           SG GS   Y ++NG  A       S     S+    N    +G Q  GE     ME S +
Sbjct: 241 SGYGSANTYGSSNGGFAGDSQFGGSPVGNSSQFGGDNTQFTAGGQFGGEDQFGSMEKSET 300

[Close]

BLAST of Sed0000437 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-31
Identity = 145/312 (46.47%), Postives = 175/312 (56.09%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVG +  Q ++    S       S  Q++R MS   SSK+F+GGISY  D+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF+KYGEV++A++I DRETGRSRGF FVTF S+EEAS+A+Q LDGQDLHGRR+RV+YAT
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 121 --------GGSRGGGGGYGG--GGYGSGAGGYGG--GGYGG-SSYGGGSYGSGGNGG--- 180
                    G  G GGGYG   GGYG+ AGGYGG  GGYGG SSY G + G GG GG   
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSS 180

Query: 181 YGDASGGYNSGGNYASNFGGGSGGNDSGYNAASNFGAGNTYGSGTSAGFGTSNENFNNSG 240
           YG  +GGY     Y+ N  GG GG        SNFG G  YG     G    +ENF    
Sbjct: 181 YGGNAGGYGGNPPYSGNAVGGGGG------YGSNFGGGGGYGVAGGVG---GSENFAQGS 240

Query: 241 SGSGG--DYFANNGP---------DASSGFEYQSRNNDTNAMNASGDQGLGELMEASGSH 286
           S + G  D F +N P         ++  G + Q   +D    N  GD   G         
Sbjct: 241 STNAGFDDKFESNQPLGNDTDHQTESGLGGDEQFGGSD----NQFGDAENGNTENGPVGF 289

[Close]

BLAST of Sed0000437 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.8e-22
Identity = 89/162 (54.94%), Postives = 106/162 (65.43%), Query Frame = 0


Query: 44  KLFIGGISYGIDDQSLREAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQA 103
           + F+GG+ +  DDQSL+ AF+KYG+VI++++ITDRETGRSRGFGFVTF S E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 104 LDGQDLHGRRVRVDYAT-------GGSRGGGGGY-------GGGGYGSGAGGYGGGGYGG 163
           ++GQDL GR + V+ A        GG  GGGGGY       GGGGYG G GGYGGG  G 
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGGGGYGGGRSG- 126

Query: 164 SSYGGGSYGS--GGNGGYGDASGGYNSGGNYASNFGGGSGGN 190
              GGG YGS  GG GGYG   GG   GG Y  + GG  GGN
Sbjct: 127 ---GGGGYGSRDGGGGGYG---GG---GGGYGGSRGGSGGGN 158

[Close]

BLAST of Sed0000437 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21
Identity = 83/159 (52.20%), Postives = 108/159 (67.92%), Query Frame = 0


Query: 44  KLFIGGISYGIDDQSLREAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQA 103
           + F+GG+++  ++++L +AFA +G+VI+++VITDRETGRSRGFGFVTF+S +    AI+ 
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68

Query: 104 LDGQDLHGRRVRVDYAT--------GGSRGGGGGYG---GGGYGSGAGGYGGGGYGGSSY 163
           ++G++L GR + V+ A         GG  GGGGGYG   GGGYG G GGYGG   GG  Y
Sbjct: 69  MNGKELDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGREGGGYGGGGGGYGGRREGGGGY 128

Query: 164 GGGSYGSGGNGGYG--DASGGYNSGGNYASNFGGGSGGN 190
           GGG YG GG GGYG  +  GGY  GG Y  N  G SGGN
Sbjct: 129 GGGGYG-GGGGGYGGREGGGGYGGGGGYGGN-RGDSGGN 165

[Close]

BLAST of Sed0000437 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.9e-21
Identity = 83/160 (51.88%), Postives = 104/160 (65.00%), Query Frame = 0


Query: 44  KLFIGGISYGIDDQSLREAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQA 103
           + F+GG+++  DD++L  AF++YGEV+++++I DRETGRSRGFGFVTF   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68

Query: 104 LDGQDLHGRRVRVDYAT-------GGSRGGGGGY---GGGGYGSGAGGYGGGG-YGGSSY 163
           ++GQDL GR + V+ A        GG RGGGGGY   GGGGYG G GGYGGGG  GG S 
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGGGGYGGGGREGGYSG 128

Query: 164 GGGSYGSGGNGGYGDASGGYNSGGNYASNFGGGSGGNDSG 193
           GGG Y S G GG     GGY  GG      GGG GG+  G
Sbjct: 129 GGGGYSSRGGGG-----GGYGGGGRRDGGEGGGYGGSGGG 163

[Close]

BLAST of Sed0000437 vs. ExPASy TrEMBL
Match: A0A6J1E1P2 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111430026 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-79
Identity = 213/323 (65.94%), Postives = 234/323 (72.45%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVGNILRQGANK  G + QA   S  QAVRWMSSMQSSK+FIGGISY  DDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEVIEARVI DRETGRSRGFGFVT+ SSEEASSAIQALDGQDLHGRRVRV+YA 
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 --------GGSRGGGGGYGGGGYGSGAGGYGGG---------GYGGSSYGGGSYGSGGN- 180
                   GG  GGGGGYGGGGYG G GGYGGG         G GG SYGGGSYG GG+ 
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYGGGGGSYGGGSYGGGGSG 180

Query: 181 -GGYGDASG-----GYNSGGNYASNFGGGS---------GGNDSGYNAASNFGAGNTYGS 240
            GGYG  SG     G+++G NY+S+FG GS         GGND+G NAASNF +GNT+GS
Sbjct: 181 GGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTFGS 240

Query: 241 GTSAGFGTSNENFNNSGSGSGGDYFANNGPDASSGF-----EYQSRNNDTNAMNASGDQG 286
           GTSAGF T+  N        GGDYFAN+G DASSGF       Q  +N+ N +NASGDQG
Sbjct: 241 GTSAGFDTNVSN-------GGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQG 300

[Close]

BLAST of Sed0000437 vs. ExPASy TrEMBL
Match: A0A6J1C030 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111006839 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.2e-78
Identity = 214/316 (67.72%), Postives = 234/316 (74.05%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVGNILRQGANK +GSD QAS  S CQAVRWMSSMQSSKLFIGGISYG DDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEVIEARVI DRETGRSRGFGFVT+ SSEEASSAIQALDGQDLHGRRVRV+YA 
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 GGSRG-GGGGYGGGGYGSGAGGYGGGGYGGSS--YGGGSYGSGG---------------- 180
             SRG GGGGYGGGGYG G+GGYGGGGYGG S  YGGG YG GG                
Sbjct: 121 DRSRGIGGGGYGGGGYGGGSGGYGGGGYGGGSGGYGGGGYGGGGGSGGYGVGGAGGGYGG 180

Query: 181 -NGGYGDASG--GYNSGGNYASN------FGGGSGGNDSGY-NAASNFGAGNTYGSGTSA 240
             GGYGD SG  GYN+ GN AS+       GGG GGND+GY NAASN   GNTY SG +A
Sbjct: 181 SGGGYGDGSGGYGYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNSDGGNTYASGATA 240

Query: 241 GFGTSNENFN-NSGSGSGGDYFANNGPDASSGFEYQSRNNDTNAMN-ASGDQGLGELMEA 286
           GFGT + N+N   G G G DYFA++G   S G ++ S  N+TN  N ASGDQ  GE ++ 
Sbjct: 241 GFGTGSGNYNVAGGDGGGNDYFASSG--YSGGDQFSS--NETNTANAASGDQDPGEQLDG 300

[Close]

BLAST of Sed0000437 vs. ExPASy TrEMBL
Match: A0A6J1JKW7 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485357 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.7e-77
Identity = 207/326 (63.50%), Postives = 229/326 (70.25%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVGNILRQ ANK  G +LQA   S CQAVRWMSSMQSSK+F+GGISY  DDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEVIEARVI DRETGRSRGFGFVT+ SSEEASSAIQALDGQDLHGRRVRV+YA 
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 GGSRGGGGGYGGGGYGSGAGGYGGGGYGGSSYGGGSYGSG-------------------- 180
             SRG GGGY GGGYG G GGYGGGGYGG  YGGG YG G                    
Sbjct: 121 DRSRGMGGGY-GGGYGGGGGGYGGGGYGGGGYGGGGYGGGSGGYGGGGGSYSGGAYGGGG 180

Query: 181 -GNGGYGDASG-----GYNSGGNYASNFGGGS---------GGNDSGYNAASNFGAGNTY 240
            G GGYG  SG     G+++G NY+S+FGGGS         GGND+G N+ASNF +GN  
Sbjct: 181 SGGGGYGGESGGGFGSGFSTGDNYSSSFGGGSQGSGGNYGTGGNDAGSNSASNFASGN-- 240

Query: 241 GSGTSAGFGTSNENFNNSGSGSGGDYFANNGPDASSGF------EYQSRNNDTNAMNASG 286
            SGTSAGF T+  N        GGDYFAN+G DASSGF      +    N++ N +NASG
Sbjct: 241 -SGTSAGFDTNVSN-------GGGDYFANSGSDASSGFGGYTGGDQFGSNDEANTLNASG 300

[Close]

BLAST of Sed0000437 vs. ExPASy TrEMBL
Match: A0A6J1I7Z2 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.8e-74
Identity = 204/314 (64.97%), Postives = 229/314 (72.93%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVGNILRQGANK IGSDLQAS  S CQAVRWMSSMQSSKLF+GGIS+  DDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEV+EAR+I DRETGRSRGFGFVT+ SSEEASSAIQALDGQDLHGRRVRV+YA 
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 -------GGSRGGGGGYGGGGYGSGAGGYGGGGYGGSSYGG---GSYGSGGNGGYGDASG 180
                  GG  GGGGGYGGGG   G GGYGGGGYGG  YGG   G YG GG+GGYGD SG
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGGYGGGGGYGGGGYGGGGYGGGGPGGYGGGGSGGYGDGSG 180

Query: 181 -----GYNSGGNYASNFGGGS---GGNDSGYNAASNFGAGNTYG--SGTSAGFGTSNENF 240
                GY+SGGNY +NFGGGS   GGN     A+ + G+ +T G   G  AG+  SN + 
Sbjct: 181 GFSTTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDAGYNASNFSG 240

Query: 241 NNSG----SGSGGDYFANNGPDASSGF-----EYQSRNNDTNAMNASGDQGLGELMEASG 286
            +SG    SG GGDYF+N G + SSGF       Q  + +T++MNA G  GLGE +E + 
Sbjct: 241 GDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAPG-SGLGEQLEGND 300

[Close]

BLAST of Sed0000437 vs. ExPASy TrEMBL
Match: A0A6J1JIA1 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485357 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.0e-74
Identity = 195/300 (65.00%), Postives = 218/300 (72.67%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVGNILRQ ANK  G +LQA   S CQAVRWMSSMQSSK+F+GGISY  DDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEVIEARVI DRETGRSRGFGFVT+ SSEEASSAIQALDGQDLHGRRVRV+YA 
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 GGSRGGGGGYGGGGYGSGAGGYGGGGYGGSSYGGGSYGSGGNGGYGDASGGYNSGGNYAS 180
             SR    G GGGGYG G G Y GG YGG   GGG YG    GG+G    G+++G NY+S
Sbjct: 121 DRSR----GMGGGGYGGGGGSYSGGAYGGGGSGGGGYGGESGGGFG---SGFSTGDNYSS 180

Query: 181 NFGGGS---------GGNDSGYNAASNFGAGNTYGSGTSAGFGTSNENFNNSGSGSGGDY 240
           +FGGGS         GGND+G N+ASNF +GN   SGTSAGF T+  N        GGDY
Sbjct: 181 SFGGGSQGSGGNYGTGGNDAGSNSASNFASGN---SGTSAGFDTNVSN-------GGGDY 240

Query: 241 FANNGPDASSGF------EYQSRNNDTNAMNASGDQGLGELMEASGSHEDDDADDFAKRA 286
           FAN+G DASSGF      +    N++ N +NASGDQGLGE +E +   EDD+ADDFAKRA
Sbjct: 241 FANSGSDASSGFGGYTGGDQFGSNDEANTLNASGDQGLGEQLEGNDRDEDDNADDFAKRA 283

[Close]

BLAST of Sed0000437 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 181.8 bits (460), Expect = 7.7e-46
Identity = 159/318 (50.00%), Postives = 193/318 (60.69%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSK GNIL+Q  NK + + +  S  S  QA+R MS   SSKLFIGG++Y +D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF KYGEV++ RVI DRETGRSRGFGFVTF SSE ASSAIQALDG+DLHGR V+V+YA 
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA- 120

Query: 121 GGSRGGGGGYGGGGYGSGAGGYGGGGYGGSSYGGGSYGSGGNGGYGDASGGY--NSGGNY 180
              R  GGG+GGGGYG G GGYGG G     YGGG+ G GG+GGYG  +GGY  NSGG Y
Sbjct: 121 -NDRTSGGGFGGGGYGGGGGGYGGSG----GYGGGAGGYGGSGGYGGGAGGYGGNSGGGY 180

Query: 181 ASNFGGGSGGNDS---------------GYNAASNFG-AGNTYGSGTSAGFGTSNENFNN 240
             N  GG GG+ +               GY ++  FG +GNTYG G+SA  G   +   +
Sbjct: 181 GGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGFGSSGNTYGEGSSASAGAVGDYNGS 240

Query: 241 SGSGSGGDYFANNGPDA------SSGFEYQSRNNDTNAMNASGDQGLGE----LMEASGS 286
           SG GS   Y ++NG  A       S     S+    N    +G Q  GE     ME S +
Sbjct: 241 SGYGSANTYGSSNGGFAGDSQFGGSPVGNSSQFGGDNTQFTAGGQFGGEDQFGSMEKSET 300

[Close]

BLAST of Sed0000437 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-32
Identity = 145/312 (46.47%), Postives = 175/312 (56.09%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAFLSKVG +  Q ++    S       S  Q++R MS   SSK+F+GGISY  D+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           EAF+KYGEV++A++I DRETGRSRGF FVTF S+EEAS+A+Q LDGQDLHGRR+RV+YAT
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 121 --------GGSRGGGGGYGG--GGYGSGAGGYGG--GGYGG-SSYGGGSYGSGGNGG--- 180
                    G  G GGGYG   GGYG+ AGGYGG  GGYGG SSY G + G GG GG   
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSS 180

Query: 181 YGDASGGYNSGGNYASNFGGGSGGNDSGYNAASNFGAGNTYGSGTSAGFGTSNENFNNSG 240
           YG  +GGY     Y+ N  GG GG        SNFG G  YG     G    +ENF    
Sbjct: 181 YGGNAGGYGGNPPYSGNAVGGGGG------YGSNFGGGGGYGVAGGVG---GSENFAQGS 240

Query: 241 SGSGG--DYFANNGP---------DASSGFEYQSRNNDTNAMNASGDQGLGELMEASGSH 286
           S + G  D F +N P         ++  G + Q   +D    N  GD   G         
Sbjct: 241 STNAGFDDKFESNQPLGNDTDHQTESGLGGDEQFGGSD----NQFGDAENGNTENGPVGF 289

[Close]

BLAST of Sed0000437 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-27
Identity = 83/161 (51.55%), Postives = 108/161 (67.08%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAF +K+G +LRQ     I S+      S   ++R M    S+KLFIGG+S+G DD SLR
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           +AFA +G+V++A+VI DRETGRSRGFGFV FN    A++AI  +DG++L+GR +RV+ A 
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 G-----GSRGGGGGY----GGGGYGSGAGGYGGGGYGGSSY 153
                  + GGGGGY    GGGGYG G GGYGGGG GG  +
Sbjct: 121 DRPSAPRAYGGGGGYSYGGGGGGYGGGGGGYGGGGDGGGGF 153

[Close]

BLAST of Sed0000437 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 119.8 bits (299), Expect = 3.6e-27
Identity = 89/168 (52.98%), Postives = 113/168 (67.26%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAF +K+G +LRQ     I S+      S   ++R M    S+KLFIGG+S+G DD SLR
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           +AFA +G+V++A+VI DRETGRSRGFGFV FN    A++AI  +DG++L+GR +RV+ A 
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 G-----GSRGGGGGY--GGGGYGSGAGGYGGGGYGGSSYGGGSYGSGG 162
                  + GGGGGY  GGGGYG G GGYGGGG G   YGGG  G GG
Sbjct: 121 DRPSAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGG---YGGGGDGGGG 157

[Close]

BLAST of Sed0000437 vs. TAIR 10
Match: AT4G13850.3 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 115.5 bits (288), Expect = 6.8e-26
Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 0


Query: 1   MAFLSKVGNILRQGANKTIGSDLQASRFSFCQAVRWMSSMQSSKLFIGGISYGIDDQSLR 60
           MAF +K+G +LRQ     I S+      S   ++R M    S+KLFIGG+S+G DD SLR
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFAKYGEVIEARVITDRETGRSRGFGFVTFNSSEEASSAIQALDGQDLHGRRVRVDYAT 120
           +AFA +G+V++A+VI DRETGRSRGFGFV FN    A++AI  +DG++L+GR +RV+ A 
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 G-----GSRGGGGGYGGGGYGSGAGGYGGGGY 148
                  + GGGGGY GGG G G GG GGGG+
Sbjct: 121 DRPSAPRAYGGGGGYSGGGGGYGGGGDGGGGF 144

The following BLAST results are available for this feature:

BLAST of Sed0000437 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023294.1	2.6e-80	66.46	Glycine-rich RNA-binding protein 3, mitochondrial [Cucurbita argyrosperma subsp....	[more]
XP_022921902.1	2.2e-79	65.94	glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata]	[more]
KAG6589603.1	3.8e-79	64.94	Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_022134612.1	2.5e-78	67.72	glycine-rich RNA-binding protein 3, mitochondrial-like [Momordica charantia]	[more]
XP_023516049.1	1.6e-77	65.12	glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]

BLAST of Sed0000437 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	1.1e-44	50.00	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	3.1e-31	46.47	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	5.8e-22	54.94	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]
Q99070	1.7e-21	52.20	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
P49310	2.9e-21	51.88	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of Sed0000437 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1P2	1.1e-79	65.94	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1C030	1.2e-78	67.72	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Momordica charantia OX...	[more]
A0A6J1JKW7	1.7e-77	63.50	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1I7Z2	1.8e-74	64.97	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1JIA1	3.0e-74	65.00	glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita m...	[more]

BLAST of Sed0000437 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	7.7e-46	50.00	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	2.2e-32	46.47	glycine-rich RNA-binding protein 5	[more]
AT4G13850.2	2.8e-27	51.55	glycine-rich RNA-binding protein 2	[more]
AT4G13850.1	3.6e-27	52.98	glycine-rich RNA-binding protein 2	[more]
AT4G13850.3	6.8e-26	51.32	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 44..117 e-value: 2.0E-30 score: 117.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 45..115 e-value: 9.4E-23 score: 79.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 43..121 score: 22.5548
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 25..138 e-value: 3.4E-33 score: 116.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..259
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 1..284
None	No IPR available	PANTHER	PTHR48027:SF9	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL	coord: 1..284
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 35..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000437.1	Sed0000437.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding