Pay0014914 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014914
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	RRM domain-containing protein
Location	chr12: 27135788 .. 27138672 (-)
RNA-Seq Expression	Pay0014914
Synteny	Pay0014914

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGGTGCCGTTGTGGAGATATGGACTCTGAGAAAAAAGAGGTAGACTCCCCTATGATTATTACGGATTGCGAATTCCTCGAAATCAAACTGTTATAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCAAAACCCTTCTTTCAGCTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGATTTCAAAGCTTTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGAGTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGACTCTACGTCAGTGGTTGATTTTCTTTCTCTCAGTTGTCTATTTAGGCATAATTTGGCTAACTGTGTATGTGGAGACAATTTGGATTGCTTGAATCATTCCAACTTCATCTGTGCAGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCGTTGACTAGTAGTTTTCTTGTGCATTCTGAACGTTCAATTTTGACTCAATTGTCGATATCTGGCCCTAACTATTATCATTTGTTGTTAAATTCAGTCAATCTGGTGATGGATAGAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAGTCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGTAATTTACGTGCTCTATCTTTGCAATTGATGCTCTGTCTAATTTCTTCCAGATGAGTATAGTTTTCATGATGCATATTGCTTTCTTCTGTGTTATGCATTATCCTCTCAATCGCCAAAATCCACTTAAAATGCCCATTTCTCACTCACTATGATTTTGTAATGCATACGACTAGCCGTCTTGAATTATATCTGATTTACTCAGCATCTCTGGGTGAAGACGATAAATCCATCTATTAGGACTCTAAATAACTATAATCTACTCCAGAACTTGCGAGGTTTAATTCCTTTAGCTGAAGACAGTTTAGGCTTTACACAAAGGGACCATAAACCTTGAATTTCTCTGTAATTTTAGCTAGGGCATAGATATCTAGAAAGGAAAAGCTGGATGCGATAGATTTAAAGTCGTATTTAGAGGACATAAAATAGCGTCCATCCAGATCCAGTTATTCTTAATCATTTCTTCCTTTCCGAGCTGCGGGACATTATAACTGTTATACCTTCAAACGGAAAAAATGAACTTCAACAGACGGTTAATAGCTGAGTGTTGATATAAGCATGAGGTATTCATAACTTTGTTTTATTGCATCGGTGCACGTGTATATCAGCAGATAGACTACTTGTCATGGTTAGATTAACATTGTTAGGAGGAACAAAGCCGATTAACTAAAGCTGCCCTCGCAATTTCTATTTTACTACATACAAAACCTTGGATGGAACTCACTTGAGCTTTGTAAATGATCTAAATATTGAATAGGCATTGCCTTCTCCCCTGTCTCCTGAGCCAAGTGAAACTCACCAGCAGACAGTTACTAATTCCCTCCCTCATCCTTTCCTCCTTAAAGCTTTCATATTTGCGATCACTTACCATCGGATCTAACTAGTTCCAACTACGGCCAAGAACAAAAGTGTTTGAAGCATAACATTAGTGTTTTTAAAATTTCTCAACGATTTTTATCATTTGACTACATACTAAGAAAATTTTGAAATATGTTTTTGGGTAAATTTTCATCTTTCTGAAAGTGATTCCAACTCAATACCATTGGTGGTCATTCTCGCCTTTGCCCTTCGTATTATAAGTAAACTACGGGGGGAGACCTAGGGGGCCTATCAAATACTGCAACCAAAATATCAAATGTTTCTTGAATATTCGGCATGCTCCACGTAACTGATTATAATAAAATTCATTACAATTTAATATGGACTTGGAAGAGAATTAATTAGAGATGGTTAAACCCTAATTTATGGCTTGACTTGTCCTAGAACGATCCCTGTTCAATGAACTTGTTATATGAAAGGATTTATTTGTAATTAAAATTTCAAACGCAAATCACACTATACTCAATATATTCGCGTTTATAGCTAAAAATTTGTGTATCAGAGTGCATAGTACCACTGTTAAATATAAAGGCACTTTTCGGCCTCGAGGTTTCCTCCAACTTATAGTGACAACTACGTTTGTCGAAGTTAACGGTCAAAGAACTTATTCCCAGGTTTATTCGATGGATATACCCTCCCCACCTCTTCTCATCGGGAAGCATGAATTGATATGATATTCTCTTCTCAGATTCCATGGATAAAATTCGATGCTACCAAAAGAGAAAAAGGGTACTTTTGAAATCAAGCTTATAGCTGGGAGGATCTGATCTTATATCAACCAATTATAGGAGATTTTTATTTTTATTTATTTCTAATAAATAAAATGAAAAGGGAATCTATGATGATCTTGTGATCTTGTTGTCTTATCTTTTTTAGTGCATGTAATTTTCAAGTACAGCAGCATCATGAACTAATAGGGGAAACTTTGGTTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAATTGCAAAATCCAGATCGGAGCTACGCCAAGGCCTTAAAGAAAACTCTAGCTAATGCATGCTAGTATATAGGCATCATTGTACTCTAAAGTTCAGATTCATTTTTATGAGAGCTGTAACATATTTTAGGGATATATATAACTAATGGTTGCGCTCTGCATTGTTATTGGTTTTCGAAAGCTTGGTCTGATTGTATGGTTATAATATAGTCAAAGTGTATTTAAGAGCAGTGTTCTGTCTTGAAATTAAATGATATTAATATCGA

mRNA sequence

TACGGTGCCGTTGTGGAGATATGGACTCTGAGAAAAAAGAGGTAGACTCCCCTATGATTATTACGGATTGCGAATTCCTCGAAATCAAACTGTTATAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCAAAACCCTTCTTTCAGCTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGATTTCAAAGCTTTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGAGTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGACTCTACGTCAGTGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATCTGGTGATGGATAGAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAGTCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAATTGCAAAATCCAGATCGGAGCTACGCCAAGGCCTTAAAGAAAACTCTAGCTAATGCATGCTAGTATATAGGCATCATTGTACTCTAAAGTTCAGATTCATTTTTATGAGAGCTGTAACATATTTTAGGGATATATATAACTAATGGTTGCGCTCTGCATTGTTATTGGTTTTCGAAAGCTTGGTCTGATTGTATGGTTATAATATAGTCAAAGTGTATTTAAGAGCAGTGTTCTGTCTTGAAATTAAATGATATTAATATCGA

Coding sequence (CDS)

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCAAAACCCTTCTTTCAGCTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGATTTCAAAGCTTTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGAGTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGACTCTACGTCAGTGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATCTGGTGATGGATAGAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAGTCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAATTGCAAAATCCAGATCGGAGCTACGCCAAGGCCTTAAAGAAAACTCTAGCTAA

Protein sequence

MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQSISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQGLKENSS

Homology

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BLAST of Pay0014914 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.5e-32
Identity = 71/116 (61.21%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 54  SARKTQSISESPLFSVACVSSSPSPRRYS--PSTRLYVSGLSFRTTEESLRNAFKSFGQL 113
           SAR+ + I    + S     SS SP   S  P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 114 VEVNLVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSEL 168
           + +N+VMD+VANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of Pay0014914 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.7e-20
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 73  SSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLR 132
           S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V DRV+   +GF F+R
Sbjct: 44  SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVR 103

Query: 133 YASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQGLKENS 176
           YA+ E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 104 YATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Pay0014914 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 66  LFSVACVSSSPS---PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVA 125
           L SV  ++SS S    +R   +++L++ GLSF TTE+ L  AF   GQ+VE  +VMDRV+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVS 71

Query: 126 NRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQG 171
           +R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK++  L  G
Sbjct: 72  DRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of Pay0014914 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-17
Identity = 40/83 (48.19%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 86  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLRYASEEESQKAIEG 145
           RL+V+GLSF T+E++LR AF+ FG+LVEV ++MDR++ R +G+AF+ Y +EE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 146 MHGKFLDGRVIFVEIAKSRSELR 169
           M+G+ ++G +I V++AK+RS  R
Sbjct: 360 MNGQIINGWMIVVDVAKTRSRDR 382

[Close]

BLAST of Pay0014914 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-17
Identity = 42/96 (43.75%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 74  SSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLRY 133
           SS + +    + RL+V+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AF+ Y
Sbjct: 284 SSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEY 343

Query: 134 ASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQ 170
            +EE    A++ M+G+ ++G +I V++AK RS  RQ
Sbjct: 344 TTEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]

BLAST of Pay0014914 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.3e-88
Identity = 174/176 (98.86%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQGLKENSS 177
           VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAK RSELRQGLKENSS
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of Pay0014914 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.0e-80
Identity = 162/180 (90.00%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQGLKENSS 177
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AKSRSELRQGL+ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of Pay0014914 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.9e-75
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFL 152
           VANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]

BLAST of Pay0014914 vs. ExPASy TrEMBL
Match: A0A5D3BIP7 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00650 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.9e-74
Identity = 149/151 (98.68%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFL 152
           VANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]

BLAST of Pay0014914 vs. ExPASy TrEMBL
Match: A0A1S4E0R2 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.2e-74
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGK 150
           VANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of Pay0014914 vs. NCBI nr
Match: XP_008439477.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 2.8e-88
Identity = 174/176 (98.86%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQGLKENSS 177
           VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAK RSELRQGLKENSS
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of Pay0014914 vs. NCBI nr
Match: XP_011649648.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 2.1e-80
Identity = 162/180 (90.00%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQGLKENSS 177
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AKSRSELRQGL+ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of Pay0014914 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 304.3 bits (778), Expect = 6.8e-79
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGL FTV AAPKPFFQ Q THHNNIRSTETH R  S +S+LAYSSTPLPFFS RKT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120
           IS+SPLFS+AC SS  SPSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQGLKENSS 177
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVE+AKSRSELRQGLKENSS
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]

BLAST of Pay0014914 vs. NCBI nr
Match: KAA0036062.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 6.0e-75
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFL 152
           VANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]

BLAST of Pay0014914 vs. NCBI nr
Match: TYJ98869.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 288.5 bits (737), Expect = 3.9e-74
Identity = 149/151 (98.68%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFL 152
           VANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]

BLAST of Pay0014914 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-33
Identity = 71/116 (61.21%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 54  SARKTQSISESPLFSVACVSSSPSPRRYS--PSTRLYVSGLSFRTTEESLRNAFKSFGQL 113
           SAR+ + I    + S     SS SP   S  P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 114 VEVNLVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSEL 168
           + +N+VMD+VANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of Pay0014914 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 99.0 bits (245), Expect = 4.1e-21
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 73  SSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLR 132
           S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V DRV+   +GF F+R
Sbjct: 44  SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVR 103

Query: 133 YASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQGLKENS 176
           YA+ E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 104 YATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Pay0014914 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-19
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 84  STRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLRYASEEESQKAI 143
           S +L+VS LS  TT++SLR  F  FGQ+ E  L+ D    RP+GF F+ + SE++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 144 EGMHGKFLDGRVIFVEIAKSRSELRQGLKENSS 177
           + + GK +DGR+IFVE+AK+  E+R G+  N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]

BLAST of Pay0014914 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 91.3 bits (225), Expect = 8.5e-19
Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 66  LFSVACVSSSPS---PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVA 125
           L SV  ++SS S    +R   +++L++ GLSF TTE+ L  AF   GQ+VE  +VMDRV+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVS 71

Query: 126 NRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKSRSELRQG 171
           +R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK++  L  G
Sbjct: 72  DRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of Pay0014914 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-17
Identity = 36/79 (45.57%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 86  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLRYASEEESQKAIEG 145
           +L+++GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AFL Y +EE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 146 MHGKFLDGRVIFVEIAKSR 165
           M+GK ++G +I V++AK++
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

The following BLAST results are available for this feature:

BLAST of Pay0014914 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	6.5e-32	61.21	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	5.7e-20	48.54	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	1.2e-17	44.44	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
C0HFE5	2.0e-17	48.19	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q6YWP9	2.7e-17	43.75	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]

BLAST of Pay0014914 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYF6	1.3e-88	98.86	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0LQB8	1.0e-80	90.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A5A7SXY0	2.9e-75	99.34	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3BIP7	1.9e-74	98.68	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4E0R2	4.2e-74	99.33	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis mel...	[more]

BLAST of Pay0014914 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439477.1	2.8e-88	98.86	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu...	[more]
XP_011649648.1	2.1e-80	90.00	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sat...	[more]
XP_038895072.1	6.8e-79	88.20	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]
KAA0036062.1	6.0e-75	99.34	glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]	[more]
TYJ98869.1	3.9e-74	98.68	glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]	[more]

BLAST of Pay0014914 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	4.6e-33	61.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	4.1e-21	48.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	1.0e-19	45.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	8.5e-19	44.44	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	1.2e-17	45.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..159 e-value: 1.0E-25 score: 101.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..156 e-value: 4.5E-19 score: 68.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..163 score: 19.740658
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 86..159 e-value: 4.5E-4 score: 29.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 30..172 e-value: 3.2E-30 score: 107.2
None	No IPR available	PANTHER	PTHR15241:SF328	RNA-BINDING PROTEIN 1	coord: 3..175
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 3..175
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 69..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014914.1	Pay0014914.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding