Pay0013641 (gene) Melon (Payzawat) v1

Overview


Name	Pay0013641
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	cold-inducible RNA-binding protein B-like
Location	chr04: 16791980 .. 16792823 (+)
RNA-Seq Expression	Pay0013641
Synteny	Pay0013641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGATAGTTTCCACATAATCTTCAATTTGTACAATGCCATCGTCGTTGTTAAGGTTAATTCCTCCACCAACCGGATTCGTTCCTTCCATCTTTTTGTGTGACAAATTTTCTTTTACAATTGTTGATAATAGTGTTACGTCATGTATACCTCATAATTATTATGTAGGTCTTTAGGTGTTTTTGATGGAATATTTGGATTGCTTGAATATGTTTTTTTTTTCAAGGCTATTTGAAGTTTGGAGATCAATTCAAACTCAATTGTTTAGTTTATGACTTTTATTTAGAAGTATAGGCGTGTTTGAGTTAGTGAAAATGGTGAAAAAAAACTGGGTTGTGGTAAAGAGTTTTTGTTATTGTGGAGAATTTGAGTAGTTAGTTTACCTTTGTGTTTGCTAAAATGTTTCAATTAGGCTTGTTGAATGGCTTTTTTACATGTGGTTTAGTGTAATTCTAATTGAATGTTTTGATTTGGGCTTTGATTTGGTCTTCAGATTATCAAAGATCGTTCTACTAAGGGAAAGTGTTATGGTTTTGTTACCTTTACAAACCCTCAATCTACTATTGATGCCATAAAAGACATGGATGGAAGGGTATGTTAATTTATAGTTGGAAAAAAAATACAAATCTTTTTAGCCTTGATGGTTATATATTTTTCATTATGTTCTTTTGAGTCTTGAGTCCTGACATTATAAGGCTTTGGATTAGACTATTGAAGGACGGGTTGTCAGAGTTAATGGGGTGAAGGTTGGAATCTTATCGGACTCTTCATCGCACCACCCCATTCGCTGTTGTCCTCCTCTAAGTAAGTTTAACTTGATCTATTGCTTTTCTCTTCAATGA

mRNA sequence

ATGAAGGATAGTTTCCACATAATCTTCAATTTGTACAATGCCATCGTCGTTGTTAAGATTATCAAAGATCGTTCTACTAAGGGAAAGTGTTATGGTTTTGTTACCTTTACAAACCCTCAATCTACTATTGATGCCATAAAAGACATGGATGGAAGGACTATTGAAGGACGGGTTGTCAGAGTTAATGGGGTGAAGGTTGGAATCTTATCGGACTCTTCATCGCACCACCCCATTCGCTGTTGTCCTCCTCTAAGTAAGTTTAACTTGATCTATTGCTTTTCTCTTCAATGA

Coding sequence (CDS)

ATGAAGGATAGTTTCCACATAATCTTCAATTTGTACAATGCCATCGTCGTTGTTAAGATTATCAAAGATCGTTCTACTAAGGGAAAGTGTTATGGTTTTGTTACCTTTACAAACCCTCAATCTACTATTGATGCCATAAAAGACATGGATGGAAGGACTATTGAAGGACGGGTTGTCAGAGTTAATGGGGTGAAGGTTGGAATCTTATCGGACTCTTCATCGCACCACCCCATTCGCTGTTGTCCTCCTCTAAGTAAGTTTAACTTGATCTATTGCTTTTCTCTTCAATGA

Protein sequence

MKDSFHIIFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVNGVKVGILSDSSSHHPIRCCPPLSKFNLIYCFSLQ

Homology

[Close]

BLAST of Pay0013641 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-07
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 2  KDSFHIIFNLYNAIVVVKIIKDRSTK-GKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVR 61
          ++S   +F+ Y  I  V ++KDR TK  + +GFVTF NP    DA+  M+G+ ++GR +R
Sbjct: 18 EESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIR 77

Query: 62 VN 63
          V+
Sbjct: 78 VD 79

[Close]

BLAST of Pay0013641 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-07
Identity = 23/62 (37.10%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 2  KDSFHIIFNLYNAIVVVKIIKDRSTK-GKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVR 61
          ++S   +F+ Y  +  V ++KDR +K  + +GFVTF NP+   DA+  M+G++++GR +R
Sbjct: 19 EESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIR 78

Query: 62 VN 63
          V+
Sbjct: 79 VD 80

[Close]

BLAST of Pay0013641 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-07
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 2   KDSFHIIFNLYNAIVVVKIIKDRST-KGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVR 61
           +DS    F  Y  +V  ++I DR T + + +GFVTFT+ ++   AI+ +DGR + GRVV+
Sbjct: 53  EDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVK 112

Query: 62  VN 63
           VN
Sbjct: 113 VN 114

[Close]

BLAST of Pay0013641 vs. ExPASy Swiss-Prot
Match: O89086 (RNA-binding protein 3 OS=Mus musculus OX=10090 GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.4e-06
Identity = 22/55 (40.00%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 9  FNLYNAIVVVKIIKDRST-KGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVN 63
          F+ +  I  V ++KDR T + + +GF+TFTNP+   DA++ M+G +++GR +RV+
Sbjct: 26 FSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVD 80

[Close]

BLAST of Pay0013641 vs. ExPASy Swiss-Prot
Match: P0DJD3 (RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo sapiens OX=9606 GN=RBMY1A1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.4e-06
Identity = 21/58 (36.21%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 8  IFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVNGVK 66
          +F  +  I  V +IKDR++K + + F+TF NP    +A KDM+G+++ G+ ++V   K
Sbjct: 27 VFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84

[Close]

BLAST of Pay0013641 vs. ExPASy TrEMBL
Match: A0A1S3BIQ6 (cold-inducible RNA-binding protein B-like OS=Cucumis melo OX=3656 GN=LOC103490011 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.1e-47
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MKDSFHIIFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVR 60
          MKDSFH IFNLYNAIVVVKII DRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVR
Sbjct: 1  MKDSFHRIFNLYNAIVVVKIINDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVR 60

Query: 61 VNGVKVGILSDSSSHHPIRCCPPLSKFNLIYCFSLQ 97
          VNGVKVGILSDSSSHHPIRCCPPLSKFNLIYCFSLQ
Sbjct: 61 VNGVKVGILSDSSSHHPIRCCPPLSKFNLIYCFSLQ 96

[Close]

BLAST of Pay0013641 vs. ExPASy TrEMBL
Match: A0A5A7UC72 (Cold-inducible RNA-binding protein B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G00880 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.5e-30
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 18 VKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVNGVKVGILSDSSSHHP 77
          V II DRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVNGVKVGILSDSSSHHP
Sbjct: 7  VVIINDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVNGVKVGILSDSSSHHP 66

Query: 78 IRCCPPLS 86
          IRCCPPLS
Sbjct: 67 IRCCPPLS 74

[Close]

BLAST of Pay0013641 vs. ExPASy TrEMBL
Match: A0A5D3CHM1 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00030 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.5e-21
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2  KDSFHIIFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRV 61
          +DS   IF+LY A+V VKII DRST+GKCYGFVTFTNP+S IDAIKDMDGRTIEGRVVRV
Sbjct: 20 EDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRV 79

Query: 62 NGVK 66
          NGVK
Sbjct: 80 NGVK 83

[Close]

BLAST of Pay0013641 vs. ExPASy TrEMBL
Match: A0A0A0LIV9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.5e-21
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2  KDSFHIIFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRV 61
          +DS   IF+LY A+V VKII DRST+GKCYGFVTFTNP+S IDAIKDMDGRTIEGRVVRV
Sbjct: 20 EDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRV 79

Query: 62 NGVK 66
          NGVK
Sbjct: 80 NGVK 83

[Close]

BLAST of Pay0013641 vs. ExPASy TrEMBL
Match: A0A5A7V7D5 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001420 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2  KDSFHIIFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRV 61
          +D+   IF+LY A+V VKII DRST+GKCYGFVTFTNP+S IDAIKDMDGRTIEGRVVRV
Sbjct: 20 EDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRV 79

Query: 62 NGVK 66
          NGVK
Sbjct: 80 NGVK 83

[Close]

BLAST of Pay0013641 vs. NCBI nr
Match: XP_008447595.1 (PREDICTED: cold-inducible RNA-binding protein B-like [Cucumis melo])

HSP 1 Score: 196.8 bits (499), Expect = 8.4e-47
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MKDSFHIIFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVR 60
          MKDSFH IFNLYNAIVVVKII DRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVR
Sbjct: 1  MKDSFHRIFNLYNAIVVVKIINDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVR 60

Query: 61 VNGVKVGILSDSSSHHPIRCCPPLSKFNLIYCFSLQ 97
          VNGVKVGILSDSSSHHPIRCCPPLSKFNLIYCFSLQ
Sbjct: 61 VNGVKVGILSDSSSHHPIRCCPPLSKFNLIYCFSLQ 96

[Close]

BLAST of Pay0013641 vs. NCBI nr
Match: KAA0051139.1 (cold-inducible RNA-binding protein B-like [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 9.3e-30
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 18 VKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVNGVKVGILSDSSSHHP 77
          V II DRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVNGVKVGILSDSSSHHP
Sbjct: 7  VVIINDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVNGVKVGILSDSSSHHP 66

Query: 78 IRCCPPLS 86
          IRCCPPLS
Sbjct: 67 IRCCPPLS 74

[Close]

BLAST of Pay0013641 vs. NCBI nr
Match: TYK10694.1 (zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2  KDSFHIIFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRV 61
          +DS   IF+LY A+V VKII DRST+GKCYGFVTFTNP+S IDAIKDMDGRTIEGRVVRV
Sbjct: 20 EDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRV 79

Query: 62 NGVK 66
          NGVK
Sbjct: 80 NGVK 83

[Close]

BLAST of Pay0013641 vs. NCBI nr
Match: XP_004139331.2 (U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothetical protein Csa_019381 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2  KDSFHIIFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRV 61
          +DS   IF+LY A+V VKII DRST+GKCYGFVTFTNP+S IDAIKDMDGRTIEGRVVRV
Sbjct: 20 EDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRV 79

Query: 62 NGVK 66
          NGVK
Sbjct: 80 NGVK 83

[Close]

BLAST of Pay0013641 vs. NCBI nr
Match: XP_008457973.1 (PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061579.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-20
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2  KDSFHIIFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRV 61
          +D+   IF+LY A+V VKII DRST+GKCYGFVTFTNP+S IDAIKDMDGRTIEGRVVRV
Sbjct: 20 EDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRV 79

Query: 62 NGVK 66
          NGVK
Sbjct: 80 NGVK 83

[Close]

BLAST of Pay0013641 vs. TAIR 10
Match: AT5G19960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-15
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 8  IFNLYNAIVVVKIIKDRSTKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVNGV 65
          +F++Y +++ VKI+ DRS +GKCYGFVTF+N +S  DAI+DMDG++I GR VRVN V
Sbjct: 26 VFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRVNDV 82

[Close]

BLAST of Pay0013641 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 54.3 bits (129), Expect = 6.3e-08
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 2   KDSFHIIFNLYNAIVVVKIIKDRST-KGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVR 61
           +DS    F  Y  +V  ++I DR T + + +GFVTFT+ ++   AI+ +DGR + GRVV+
Sbjct: 53  EDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVK 112

Query: 62  VN 63
           VN
Sbjct: 113 VN 114

[Close]

BLAST of Pay0013641 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 47.8 bits (112), Expect = 5.9e-06
Identity = 22/55 (40.00%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 9  FNLYNAIVVVKIIKDR-STKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVN 63
          F+ +  ++  KII DR S + + +GFVTF + ++  DAI++M+G+ ++GRV+ VN
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80

[Close]

BLAST of Pay0013641 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 47.8 bits (112), Expect = 5.9e-06
Identity = 22/55 (40.00%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 9  FNLYNAIVVVKIIKDR-STKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVN 63
          F+ +  ++  KII DR S + + +GFVTF + ++  DAI++M+G+ ++GRV+ VN
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80

[Close]

BLAST of Pay0013641 vs. TAIR 10
Match: AT4G39260.3 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 47.8 bits (112), Expect = 5.9e-06
Identity = 22/55 (40.00%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 9  FNLYNAIVVVKIIKDR-STKGKCYGFVTFTNPQSTIDAIKDMDGRTIEGRVVRVN 63
          F+ +  ++  KII DR S + + +GFVTF + ++  DAI++M+G+ ++GRV+ VN
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80

The following BLAST results are available for this feature:

BLAST of Pay0013641 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9DED4	8.8e-07	40.32	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
Q28IQ9	8.8e-07	37.10	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q9FNR1	8.8e-07	41.94	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
O89086	4.4e-06	40.00	RNA-binding protein 3 OS=Mus musculus OX=10090 GN=Rbm3 PE=1 SV=1	[more]
P0DJD3	4.4e-06	36.21	RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo sapiens OX=9...	[more]

BLAST of Pay0013641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BIQ6	4.1e-47	97.92	cold-inducible RNA-binding protein B-like OS=Cucumis melo OX=3656 GN=LOC10349001...	[more]
A0A5A7UC72	4.5e-30	97.06	Cold-inducible RNA-binding protein B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3CHM1	6.5e-21	81.25	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0LIV9	6.5e-21	81.25	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV...	[more]
A0A5A7V7D5	1.5e-20	79.69	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Pay0013641 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447595.1	8.4e-47	97.92	PREDICTED: cold-inducible RNA-binding protein B-like [Cucumis melo]	[more]
KAA0051139.1	9.3e-30	97.06	cold-inducible RNA-binding protein B-like [Cucumis melo var. makuwa]	[more]
TYK10694.1	1.4e-20	81.25	zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]	[more]
XP_004139331.2	1.4e-20	81.25	U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothet...	[more]
XP_008457973.1	3.0e-20	79.69	PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061...	[more]

BLAST of Pay0013641 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19960.1	1.4e-15	59.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	6.3e-08	41.94	glycine-rich RNA-binding protein 3	[more]
AT4G39260.1	5.9e-06	40.00	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	5.9e-06	40.00	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.3	5.9e-06	40.00	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..62 e-value: 2.2E-13 score: 52.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 8..60 e-value: 1.9E-10 score: 40.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..66 score: 12.151006
None	No IPR available	PANTHER	PTHR15241:SF326	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA ISOFORM X1	coord: 3..74
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 3..74
None	No IPR available	CDD	cd00590	RRM_SF	coord: 2..62 e-value: 7.27719E-13 score: 56.5445
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0013641.1	Pay0013641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding