Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGGCTAAATTAGCCAAACAAACACAACACAGATCTCTAGTTGATGGACTTTGAGCAAGTTCTCAATCTCTTCGATTCTTTTTGGTTCAAGCGTGAAATCTTCAACAAACACCCCTTTCCAAGCAAAGAAATCACGGGAGCCGAGTCGAGGAGGAGGAAACCTAGAGGAAGAAGAATTAGGGGGTCGGAAAATAGGAGCCAATTGGAGCTGGAATTTGAGGAGCTAAAAGGGTTTATGGATTTGGGATTTGTTTTCTCGGAGGAGGATAAAGGTTCGATCTTGGCCTCCATAGTTCCTGGATTGAATTGGCTAGGAAAAAGGGAAGAAGAAGAAGAAGGAGAAGAAAAGTTGTGTGCTGGCGAAATTTCTAGGCCTTATCTTTCAGAAGCTTGGGAGACTATGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAAAGGTGGAACTGAAGAAGCCATTGAAGATGAAATGGAAGTTTCCTTCTAATGAAATTCATATGAAAGTTAATCTCAAATGGTGGGCTCATGCTGTTGCTTCAACTGTTAGATCATGACTCTACTCTTAATTCTTTTTTTCTTACTTCTATTAAGTATATCATCGATTCAAGCTCCAATTTTTAGGGAGTAAGATCATGTAATTACACAGTTTAACCTTTTGCCTATAATTTATTCTTCTATCTGTTCTTCGTG
mRNA sequence
GAAAGGCTAAATTAGCCAAACAAACACAACACAGATCTCTAGTTGATGGACTTTGAGCAAGTTCTCAATCTCTTCGATTCTTTTTGGTTCAAGCGTGAAATCTTCAACAAACACCCCTTTCCAAGCAAAGAAATCACGGGAGCCGAGTCGAGGAGGAGGAAACCTAGAGGAAGAAGAATTAGGGGGTCGGAAAATAGGAGCCAATTGGAGCTGGAATTTGAGGAGCTAAAAGGGTTTATGGATTTGGGATTTGTTTTCTCGGAGGAGGATAAAGGTTCGATCTTGGCCTCCATAGTTCCTGGATTGAATTGGCTAGGAAAAAGGGAAGAAGAAGAAGAAGGAGAAGAAAAGTTGTGTGCTGGCGAAATTTCTAGGCCTTATCTTTCAGAAGCTTGGGAGACTATGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAAAGGTGGAACTGAAGAAGCCATTGAAGATGAAATGGAAGTTTCCTTCTAATGAAATTCATATGAAAGTTAATCTCAAATGGTGGGCTCATGCTGTTGCTTCAACTGTTAGATCATGACTCTACTCTTAATTCTTTTTTTCTTACTTCTATTAAGTATATCATCGATTCAAGCTCCAATTTTTAGGGAGTAAGATCATGTAATTACACAGTTTAACCTTTTGCCTATAATTTATTCTTCTATCTGTTCTTCGTG
Coding sequence (CDS)
ATGGACTTTGAGCAAGTTCTCAATCTCTTCGATTCTTTTTGGTTCAAGCGTGAAATCTTCAACAAACACCCCTTTCCAAGCAAAGAAATCACGGGAGCCGAGTCGAGGAGGAGGAAACCTAGAGGAAGAAGAATTAGGGGGTCGGAAAATAGGAGCCAATTGGAGCTGGAATTTGAGGAGCTAAAAGGGTTTATGGATTTGGGATTTGTTTTCTCGGAGGAGGATAAAGGTTCGATCTTGGCCTCCATAGTTCCTGGATTGAATTGGCTAGGAAAAAGGGAAGAAGAAGAAGAAGGAGAAGAAAAGTTGTGTGCTGGCGAAATTTCTAGGCCTTATCTTTCAGAAGCTTGGGAGACTATGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAAAGGTGGAACTGAAGAAGCCATTGAAGATGAAATGGAAGTTTCCTTCTAATGAAATTCATATGAAAGTTAATCTCAAATGGTGGGCTCATGCTGTTGCTTCAACTGTTAGATCATGA
Protein sequence
MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEELKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETMEEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWAHAVASTVRS
Homology
BLAST of Pay0012886 vs. ExPASy TrEMBL
Match:
A0A5D3E454 (Cyclin-dependent kinase 11B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00970 PE=4 SV=1)
HSP 1 Score: 333.6 bits (854), Expect = 5.0e-88
Identity = 172/173 (99.42%), Postives = 172/173 (99.42%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE 60
MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE
Sbjct: 1 MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE 60
Query: 61 LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM 120
LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM
Sbjct: 61 LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM 120
Query: 121 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWAHAVASTVRS 174
EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWA AVASTVRS
Sbjct: 121 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVRS 173
BLAST of Pay0012886 vs. ExPASy TrEMBL
Match:
A0A0A0LT30 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181530 PE=4 SV=1)
HSP 1 Score: 293.9 bits (751), Expect = 4.4e-76
Identity = 154/171 (90.06%), Postives = 161/171 (94.15%), Query Frame = 0
Query: 2 DFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEEL 61
DFEQVLNLFDSFWFKR+IFNKHPFPSKEI GAES RRKPRGR+ RG+ENRSQLELEFEEL
Sbjct: 3 DFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAES-RRKPRGRKTRGAENRSQLELEFEEL 62
Query: 62 KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETME 121
KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEE E+KLC GEISRPYLSEAWETM
Sbjct: 63 KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEEEQKLC-GEISRPYLSEAWETM- 122
Query: 122 EEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWAHAVASTVR 173
EEEEEEEEEEEKVELKKPL MKW+FPSNEIHMKVNLKWWAHAVAST++
Sbjct: 123 ---EEEEEEEEEEEKVELKKPLMMKWRFPSNEIHMKVNLKWWAHAVASTIK 167
BLAST of Pay0012886 vs. ExPASy TrEMBL
Match:
A0A0A0LV26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470240 PE=4 SV=1)
HSP 1 Score: 192.2 bits (487), Expect = 1.8e-45
Identity = 126/260 (48.46%), Postives = 141/260 (54.23%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFP---------------------------------- 60
MDF+ +LNLFDSFWF+R++ N HPFP
Sbjct: 1 MDFDHLLNLFDSFWFQRQVLNNHPFPSNPQILQPQIQDPDPLPKESFLIPRLRTRSISED 60
Query: 61 ----------------------------SKEITGAES----------------RRRKPRG 120
SK+I GAES RR+ RG
Sbjct: 61 LSSKLSFMSNSNSPDSVLLSPKLQTIFSSKDIAGAESPETSHKVEIERRPKTEYRRRLRG 120
Query: 121 RRIRGSENRSQLELEFEELKGFMDLGFVFSEEDKGSILASIVPGLNWLGKR--------- 173
RR R SE+RS ELEFEELKGFMDLGFVFSEEDKGS LASIVPGLN LGKR
Sbjct: 121 RRTRRSESRSLSELEFEELKGFMDLGFVFSEEDKGSSLASIVPGLNRLGKREEKGNKEGE 180
BLAST of Pay0012886 vs. ExPASy TrEMBL
Match:
A0A6J1KR35 (uncharacterized protein LOC111495710 OS=Cucurbita maxima OX=3661 GN=LOC111495710 PE=4 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 8.4e-43
Identity = 123/254 (48.43%), Postives = 133/254 (52.36%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFP---------------------------------- 60
MD EQVLNLFDSFWF+REIFNKHPFP
Sbjct: 1 MDVEQVLNLFDSFWFEREIFNKHPFPTNPQNPRPENQDRDPLKNSPPEEPFVPRICPRSI 60
Query: 61 -------------------------------SKEITGAE--------------SRRRKPR 120
SK+I G E +RR+
Sbjct: 61 SEDLSSKLTFMSDSSSPDSVLFSPKLQTILSSKDIAGEEPPEKSRRVVIRQKRKQRRRIG 120
Query: 121 GRRIRGSENRSQLELEFEELKGFMDLGFVFSEEDKGSILASIVPGLNWLGKR---EEEEE 173
GR IRGSE+RS ELEFEELKGFMDLGFVFSE DK S LA IVPGLN LGKR EEEEE
Sbjct: 121 GRSIRGSESRSLSELEFEELKGFMDLGFVFSEGDKSSSLAWIVPGLNRLGKRDEEEEEEE 180
BLAST of Pay0012886 vs. ExPASy TrEMBL
Match:
A0A5A7UPL7 (DUF1685 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002460 PE=4 SV=1)
HSP 1 Score: 181.0 bits (458), Expect = 4.2e-42
Identity = 111/172 (64.53%), Postives = 119/172 (69.19%), Query Frame = 0
Query: 25 FPSKEITGAES----------------RRRKPRGRRIRGSENRSQLELEFEELKGFMDLG 84
F SK+I GAES RR+ RGRR R SE+RS ELEFEELKGFMDLG
Sbjct: 84 FSSKDIAGAESPETSRKLEIERRPKTEYRRRFRGRRTRRSESRSLSELEFEELKGFMDLG 143
Query: 85 FVFSEEDKGSILASIVPGLNWLGKR--------EEEEEGEEKLCAGEISRPYLSEAWETM 144
FVFSEEDKGS LASIVPGLN LGK+ EEEEE EE+ GEISRPYLSEAWE M
Sbjct: 144 FVFSEEDKGSSLASIVPGLNRLGKKEEKESKEEEEEEEEEERKLGGEISRPYLSEAWEAM 203
Query: 145 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWAHAVASTVR 173
EEEEE+EE KKPL MKW+FPSN+I MK NLKWWAHAVASTVR
Sbjct: 204 EEEEEKEE---------LAKKPLMMKWRFPSNQIDMKDNLKWWAHAVASTVR 246
BLAST of Pay0012886 vs. NCBI nr
Match:
KAA0035650.1 (cyclin-dependent kinase 11B-like [Cucumis melo var. makuwa] >TYK30893.1 cyclin-dependent kinase 11B-like [Cucumis melo var. makuwa])
HSP 1 Score: 333.6 bits (854), Expect = 1.0e-87
Identity = 172/173 (99.42%), Postives = 172/173 (99.42%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE 60
MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE
Sbjct: 1 MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE 60
Query: 61 LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM 120
LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM
Sbjct: 61 LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM 120
Query: 121 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWAHAVASTVRS 174
EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWA AVASTVRS
Sbjct: 121 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWARAVASTVRS 173
BLAST of Pay0012886 vs. NCBI nr
Match:
XP_011648467.1 (uncharacterized protein LOC105434476 [Cucumis sativus])
HSP 1 Score: 293.9 bits (751), Expect = 9.1e-76
Identity = 154/171 (90.06%), Postives = 161/171 (94.15%), Query Frame = 0
Query: 2 DFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEEL 61
DFEQVLNLFDSFWFKR+IFNKHPFPSKEI GAES RRKPRGR+ RG+ENRSQLELEFEEL
Sbjct: 3 DFEQVLNLFDSFWFKRKIFNKHPFPSKEIAGAES-RRKPRGRKTRGAENRSQLELEFEEL 62
Query: 62 KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETME 121
KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEE E+KLC GEISRPYLSEAWETM
Sbjct: 63 KGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEEEQKLC-GEISRPYLSEAWETM- 122
Query: 122 EEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWAHAVASTVR 173
EEEEEEEEEEEKVELKKPL MKW+FPSNEIHMKVNLKWWAHAVAST++
Sbjct: 123 ---EEEEEEEEEEEKVELKKPLMMKWRFPSNEIHMKVNLKWWAHAVASTIK 167
BLAST of Pay0012886 vs. NCBI nr
Match:
XP_038895821.1 (uncharacterized protein LOC120083990 [Benincasa hispida])
HSP 1 Score: 238.4 bits (607), Expect = 4.5e-59
Identity = 131/172 (76.16%), Postives = 143/172 (83.14%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFPSKEITGAESRRRKPRGRRIRGSENRSQLELEFEE 60
MDFEQ+LNLFD FWF+ +IFNKHPF SKEI GAESRRR RGRR+RG E+RS LELE EE
Sbjct: 1 MDFEQILNLFDLFWFESKIFNKHPFSSKEIAGAESRRRL-RGRRMRGWESRSLLELELEE 60
Query: 61 LKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEEEEGEEKLCAGEISRPYLSEAWETM 120
LKGFMDLGFVFSEEDKGS LASIVPGLN +GKREEEEE E K C+ EISRPYLSEAW+ M
Sbjct: 61 LKGFMDLGFVFSEEDKGSSLASIVPGLNRIGKREEEEE-ERKFCS-EISRPYLSEAWKAM 120
Query: 121 EEEEEEEEEEEEEEEKVELKKPLKMKWKFPSNEIHMKVNLKWWAHAVASTVR 173
EEEE+EE ELKK L MKWKFPSN++HMKV+LKWWAH VASTVR
Sbjct: 121 EEEEDEE----------ELKKSLMMKWKFPSNQMHMKVHLKWWAHVVASTVR 159
BLAST of Pay0012886 vs. NCBI nr
Match:
XP_038895996.1 (uncharacterized protein LOC120084174 [Benincasa hispida])
HSP 1 Score: 208.8 bits (530), Expect = 3.8e-50
Identity = 134/251 (53.39%), Postives = 141/251 (56.18%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFP---------------------------------- 60
MDFEQ+LNLFDSFWF+ EIFNKHPFP
Sbjct: 1 MDFEQLLNLFDSFWFEHEIFNKHPFPSNPQNPQPENQDNSLPKEPFIVPRLRTRSISEDL 60
Query: 61 ---------------------------SKEITGAES----------------RRRKPRGR 120
SK+I GAES RRK RGR
Sbjct: 61 SSKLSFMSNSNSPDSVLFSPKLQTIFSSKDIAGAESPENSRKVGIERRPKTESRRKLRGR 120
Query: 121 RIRGSENRSQLELEFEELKGFMDLGFVFSEEDKGSILASIVPGLNWLGKREEE--EEGEE 173
R+R SE+RS ELEFEELKGFMDLGFVFSEEDKGS LASIVPGLN LGK EEE EE EE
Sbjct: 121 RMRRSESRSLSELEFEELKGFMDLGFVFSEEDKGSSLASIVPGLNRLGKTEEEDIEEEEE 180
BLAST of Pay0012886 vs. NCBI nr
Match:
XP_031737252.1 (uncharacterized protein LOC105434498 [Cucumis sativus] >KGN65608.1 hypothetical protein Csa_019529 [Cucumis sativus])
HSP 1 Score: 192.2 bits (487), Expect = 3.7e-45
Identity = 126/260 (48.46%), Postives = 141/260 (54.23%), Query Frame = 0
Query: 1 MDFEQVLNLFDSFWFKREIFNKHPFP---------------------------------- 60
MDF+ +LNLFDSFWF+R++ N HPFP
Sbjct: 1 MDFDHLLNLFDSFWFQRQVLNNHPFPSNPQILQPQIQDPDPLPKESFLIPRLRTRSISED 60
Query: 61 ----------------------------SKEITGAES----------------RRRKPRG 120
SK+I GAES RR+ RG
Sbjct: 61 LSSKLSFMSNSNSPDSVLLSPKLQTIFSSKDIAGAESPETSHKVEIERRPKTEYRRRLRG 120
Query: 121 RRIRGSENRSQLELEFEELKGFMDLGFVFSEEDKGSILASIVPGLNWLGKR--------- 173
RR R SE+RS ELEFEELKGFMDLGFVFSEEDKGS LASIVPGLN LGKR
Sbjct: 121 RRTRRSESRSLSELEFEELKGFMDLGFVFSEEDKGSSLASIVPGLNRLGKREEKGNKEGE 180
BLAST of Pay0012886 vs. TAIR 10
Match:
AT2G42760.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )
HSP 1 Score: 97.8 bits (242), Expect = 8.9e-21
Identity = 66/152 (43.42%), Postives = 93/152 (61.18%), Query Frame = 0
Query: 34 ESRRRKPRGRRIRGSENRSQLELEFEELKGFMDLGFVFSEED-KGSILASIVPGLNWLGK 93
E R++K + +R + +S +LE+EELKGFMDLGFVFSE+D K S L SI+PGL L K
Sbjct: 128 EQRKKKKKKSNVRTRKGKSMSDLEYEELKGFMDLGFVFSEDDHKDSDLVSILPGLQRLVK 187
Query: 94 R-------EEEEEGEEKLCAGEISRPYLSEAWETMEEEEEEEEEEEEEEEKVELKKPLKM 153
+ EEEEE E+K+ +RPYLSEAW+ + +++ E +
Sbjct: 188 KDDGVTKEEEEEEEEDKIGGNRAARPYLSEAWDHCGGRKGKKQITPE------------I 247
Query: 154 KWKFP----SNEIHMKVNLKWWAHAVASTVRS 174
KW+ P ++E+ +K NL+ WAHAVAST+RS
Sbjct: 248 KWRVPAPAAASEVDLKDNLRLWAHAVASTIRS 267
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3E454 | 5.0e-88 | 99.42 | Cyclin-dependent kinase 11B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A0A0LT30 | 4.4e-76 | 90.06 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181530 PE=4 SV=1 | [more] |
A0A0A0LV26 | 1.8e-45 | 48.46 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470240 PE=4 SV=1 | [more] |
A0A6J1KR35 | 8.4e-43 | 48.43 | uncharacterized protein LOC111495710 OS=Cucurbita maxima OX=3661 GN=LOC111495710... | [more] |
A0A5A7UPL7 | 4.2e-42 | 64.53 | DUF1685 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |
KAA0035650.1 | 1.0e-87 | 99.42 | cyclin-dependent kinase 11B-like [Cucumis melo var. makuwa] >TYK30893.1 cyclin-d... | [more] |
XP_011648467.1 | 9.1e-76 | 90.06 | uncharacterized protein LOC105434476 [Cucumis sativus] | [more] |
XP_038895821.1 | 4.5e-59 | 76.16 | uncharacterized protein LOC120083990 [Benincasa hispida] | [more] |
XP_038895996.1 | 3.8e-50 | 53.39 | uncharacterized protein LOC120084174 [Benincasa hispida] | [more] |
XP_031737252.1 | 3.7e-45 | 48.46 | uncharacterized protein LOC105434498 [Cucumis sativus] >KGN65608.1 hypothetical ... | [more] |
Match Name | E-value | Identity | Description | |
AT2G42760.1 | 8.9e-21 | 43.42 | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685... | [more] |