Pay0008273 (gene) Melon (Payzawat) v1

Overview


Name	Pay0008273
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr03: 4657583 .. 4659492 (+)
RNA-Seq Expression	Pay0008273
Synteny	Pay0008273

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAACAATGGCAATGCTATGGGTACAACACAACCACTCATTCCAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATTCGTATGAAGACTCTTCTAAGATCTCAAGACTTATGGGACTTAGTAGAACAAGGCTAAGCAGATCCTGACGATGAAGGCAAGTTGAGGGAGAATAGGAAGAAAGACTCGAAGGCGTTGGTGATTATTCAACAAGCAGTCCATGACAGTGTTTTTTCGCGGATTGCTGCAACAACAACGTCAAAACAAGCGTAGCTGATTTTGCAAAAGGCATTTCAAGGAGATTCAAGAGTACTTGTGGTTAAATTTCAATCACTTAGACGATACTTTGAGACCTTGATGATGAAAAATGGAGAATCAATTGCTGATTTTTGTCACGGGCAACGACAATTATTAGTCAGATGCAAACATACGGCGAGACGATTAAGGATCAGACTATAGTGGAGAAAGTATTGAGAAGTTTGACTCCAAGGTTTGATCACGTTGTGGCTGCAATAGAAGAATCAAAGAACCTGTCCACTTTCACATTTATTGAATTAATGGGATCTCTTGAAGCACATGAGTCGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATACAGTTTCAAAGTATAATGACAGTGATCGTGTGATAACTCGAGGCCAAGGAAGAGGAGGATATCGTGGTCGAGGTCGTGGTACCAAAAAAGGGTGTAACCGAAATGAAGAACAAAGGCAGTTTGGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCATTGCAAGAAGTTTGGTCATGTAAAGGCAGACTGTTGGTACAAAAATCAGAGAGCCAATTTCGCAGCAGAGAATGAAGCATTTGAGAATAATGGAAAGGGTGAAAATAAGCTTTTTATGACAAACATACCCAGTGATCAAAAGACAGCAGAGGTGTGGTTCATTGATAGCGGTTGTTCGAATCACATGACAGGTTTGAAGCCTGTATTCAATGAGCTAAACGAAAGAGAAAAGTTGAAGGTAGAGCTCGGAAACGGTAAGGAGCTACAAGTAGAAGGCAAAGGAATGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTTTGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAGTGGGTATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAATCAGGACGAGTTTTGGCGAAAGTAAAGATGACCCAAAGCAAAATGTTTCTGCTGGAAGTTTCAAATGTAGAAAGTTTTGCTCTTACTGCTACTGCAACAAATACAACAAAGAACAACTCGGAGTTATGGCATTTAAGGTATGGACATCTTAATATTAAAGGGCTTTCTTTGCTAAATCAAAGAGATATGGTTATTGGGTTACCGAAAATCAGTGCTATTAATATCTGTGAAGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTTCCTATTGGGAAAGCTTGGAGAGCCTCCAAGTGTCTCGAGCTAATTCATGTTGATCTGTGCGGGCCAATGCAAACAAAGTCTCTTGGTGGGTGCTTTTATTTCTTGATTTTTATAGATGATTATAGCCGTATGAGTTGGATATATTTTCTAGAAAGAAAATTAGAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAAAAAAGCATAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAGAGGTGGAGAATTTTTGTCAAACAACTTTAACCATTTTTGCAAGGAACATGGCATCCATAGGGAGTTGACAACACCTTATACTCCGGAGCAAAATGGGGTAGTCGAGAGGAAGAATCGAACTATGGTGGAGATGACAAGAAGCAGTTGCAAATGA

mRNA sequence

ATGGGCAACAATGGCAATGCTATGGGTACAACACAACCACTCATTCCAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATTCGTATGAAGACTCTTCTAAGATCTCAAGACTTATGGGACTTATTGAGGGAGAATAGGAAGAAAGACTCGAAGGCGTTGGTGATTATTCAACAAGCAGTCCATGACAGTCTGATTTTGCAAAAGGCATTTCAAGGAGATTCAAGAGTACTTGTGGTTAAATTTCAATCACTTAGACGATACTTTGAGACCTTGATGATGAAAAATGGAGAATCAATTGCTGATTTTTGTCACGGGCAACGACAATTATTAGATCAGACTATAGTGGAGAAAGTATTGAGAAGTTTGACTCCAAGGTTTGATCACGTTGTGGCTGCAATAGAAGAATCAAAGAACCTGTCCACTTTCACATTTATTGAATTAATGGGATCTCTTGAAGCACATGAGTCGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATACAGTTTCAAAGTATAATGACAGTGATCGTGTGATAACTCGAGGCCAAGGAAGAGGAGGATATCGTGGTCGAGGTCGTGGTACCAAAAAAGGGTGTAACCGAAATGAAGAACAAAGGCAGTTTGGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCATTGCAAGAAGTTTGGTCATGTAAAGGCAGACTGTTTGAAGCCTGTATTCAATGAGCTAAACGAAAGAGAAAAGTTGAAGGTAGAGCTCGGAAACGGTAAGGAGCTACAAGTAGAAGGCAAAGGAATGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTTTGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAGTGGGTATTCTATCTTGTTTGATGATGAAAGAAAATTAGAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAAAAAAGCATAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAGAGGTGGAGAATTTTTGTCAAACAACTTTAACCATTTTTGCAAGGAACATGGCATCCATAGGGAGTTGACAACACCTTATACTCCGGAGCAAAATGGGGTAGTCGAGAGGAAGAATCGAACTATGGTGGAGATGACAAGAAGCAGTTGCAAATGA

Coding sequence (CDS)

ATGGGCAACAATGGCAATGCTATGGGTACAACACAACCACTCATTCCAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATTCGTATGAAGACTCTTCTAAGATCTCAAGACTTATGGGACTTATTGAGGGAGAATAGGAAGAAAGACTCGAAGGCGTTGGTGATTATTCAACAAGCAGTCCATGACAGTCTGATTTTGCAAAAGGCATTTCAAGGAGATTCAAGAGTACTTGTGGTTAAATTTCAATCACTTAGACGATACTTTGAGACCTTGATGATGAAAAATGGAGAATCAATTGCTGATTTTTGTCACGGGCAACGACAATTATTAGATCAGACTATAGTGGAGAAAGTATTGAGAAGTTTGACTCCAAGGTTTGATCACGTTGTGGCTGCAATAGAAGAATCAAAGAACCTGTCCACTTTCACATTTATTGAATTAATGGGATCTCTTGAAGCACATGAGTCGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATACAGTTTCAAAGTATAATGACAGTGATCGTGTGATAACTCGAGGCCAAGGAAGAGGAGGATATCGTGGTCGAGGTCGTGGTACCAAAAAAGGGTGTAACCGAAATGAAGAACAAAGGCAGTTTGGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCATTGCAAGAAGTTTGGTCATGTAAAGGCAGACTGTTTGAAGCCTGTATTCAATGAGCTAAACGAAAGAGAAAAGTTGAAGGTAGAGCTCGGAAACGGTAAGGAGCTACAAGTAGAAGGCAAAGGAATGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTTTGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATGGAGAGTGGGTATTCTATCTTGTTTGATGATGAAAGAAAATTAGAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAAAAAAGCATAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAGAGGTGGAGAATTTTTGTCAAACAACTTTAACCATTTTTGCAAGGAACATGGCATCCATAGGGAGTTGACAACACCTTATACTCCGGAGCAAAATGGGGTAGTCGAGAGGAAGAATCGAACTATGGTGGAGATGACAAGAAGCAGTTGCAAATGA

Protein sequence

MGNNGNAMGTTQPLIPIFKGEGYEFWSIRMKTLLRSQDLWDLLRENRKKDSKALVIIQQAVHDSLILQKAFQGDSRVLVVKFQSLRRYFETLMMKNGESIADFCHGQRQLLDQTIVEKVLRSLTPRFDHVVAAIEESKNLSTFTFIELMGSLEAHESRINRSMERNEEKAFQVKDTVSKYNDSDRVITRGQGRGGYRGRGRGTKKGCNRNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCLKPVFNELNEREKLKVELGNGKELQVEGKGMVGIETHHGNRILTNVQFVPDIGYNLLSVGQLMESGYSILFDDERKLETFEKFKHFKAKVKKHSGMFIKSLRSDRGGEFLSNNFNHFCKEHGIHRELTTPYTPEQNGVVERKNRTMVEMTRSSCK

Homology

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BLAST of Pay0008273 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-13
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 317 KLETFEKFKHFKAKVKKHSGMFIKSLRSDRGGEFLSNNFNHFCKEHGIHRELTTPYTPEQ 376
           K + F+ F+ F A V++ +G  +K LRSD GGE+ S  F  +C  HGI  E T P TP+ 
Sbjct: 522 KDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQH 581

Query: 377 NGVVERKNRTMVEMTRS 394
           NGV ER NRT+VE  RS
Sbjct: 582 NGVAERMNRTIVEKVRS 598

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BLAST of Pay0008273 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 63.2 bits (152), Expect = 7.8e-09
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 292 DIGYNLLSVGQLMESGYSILFDDERKLETFEKFKHFKAKVKKHSGMFIKSLRSDRGGEFL 351
           D  Y ++ V Q   + Y + +  + K + F  F+ F AK + H  + +  L  D G E+L
Sbjct: 499 DKNYFVIFVDQF--THYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYL 558

Query: 352 SNNFNHFCKEHGIHRELTTPYTPEQNGVVERKNRTMVEMTRS 394
           SN    FC + GI   LT P+TP+ NGV ER  RT+ E  R+
Sbjct: 559 SNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKART 598

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BLAST of Pay0008273 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.8e-05
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 308 YSILFDDERKLETFEKFKHFKAKVKKHSGMFIKSLRSDRGGEFLSNNFNHFCKEHGIHRE 367
           Y+ L+  ++K +  + F  FK+ V+      I +L SD GGEF+      +  +HGI   
Sbjct: 534 YTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVV--LRDYLSQHGISHF 593

Query: 368 LTTPYTPEQNGVVERKNRTMVEM 391
            + P+TPE NG+ ERK+R +VEM
Sbjct: 594 TSPPHTPEHNGLSERKHRHIVEM 614

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BLAST of Pay0008273 vs. ExPASy Swiss-Prot
Match: Q87040 (Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) OX=298339 GN=pol PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.4e-05
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 340 KSLRSDRGGEFLSNNFNHFCKEHGIHRELTTPYTPEQNGVVERKN 385
           K + SD+G  F S+ F  + KE GIH E +TPY P+ +G VERKN
Sbjct: 931 KVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKN 975

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BLAST of Pay0008273 vs. ExPASy Swiss-Prot
Match: P14350 (Pro-Pol polyprotein OS=Human spumaretrovirus OX=11963 GN=pol PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 1.5e-04
Identity = 22/45 (48.89%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 340 KSLRSDRGGEFLSNNFNHFCKEHGIHRELTTPYTPEQNGVVERKN 385
           K + SD+G  F S+ F  + KE GIH E +TPY P+    VERKN
Sbjct: 931 KVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKN 975

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BLAST of Pay0008273 vs. ExPASy TrEMBL
Match: A0A5A7UQM0 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 PE=4 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 8.3e-155
Identity = 320/497 (64.39%), Postives = 347/497 (69.82%), Query Frame = 0


Query: 1   MGNNGNAMGTTQPLIPIFKGEGYEFWSIRMKTLLRSQDLWDL-------------LRENR 60
           M NNGN MGTTQPLIPIFKGEGYEFWSIRMKTLL SQDLWDL             L+ENR
Sbjct: 1   MSNNGNVMGTTQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  KKDSKALVIIQQAVHDS---------------LILQKAFQGDSRVLVVKFQSLRRYFETL 120
           +KD KALVI+QQAVHD+               LILQKAFQGDSRVLVVK QSL+R FETL
Sbjct: 61  EKDPKALVIVQQAVHDNVFSRIAAATTSKQAWLILQKAFQGDSRVLVVKLQSLKRDFETL 120

Query: 121 MMKNGESIADFCH------GQRQ-----LLDQTIVEKVLRSLTPRFDHVVAAIEESKNLS 180
           MMKNGESIADF         Q Q     + DQTIVEKVLRSLTP+FDHVVAAIEESK+LS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLEAHESRINRSMERNEEKAFQVKDTVSKYNDSDRVITRGQGRGGYRGRGR 240
           TFTFIELMGSL+AHESRIN SME+N+EKAF+VKD V KYNDSD V+T+GQG GGYR RGR
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGR 240

Query: 241 GTKKGCNRNEEQRQFGVQSSNKANIQCYHCKKFGHVKADC-------------------- 300
           GT KGCN+NEEQRQFGVQSSNKANIQCYHCKKFGHVKADC                    
Sbjct: 241 GTGKGCNQNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNQRANFTEQNEASENNG 300

Query: 301 ---------------------------------LKPVFNELNEREKLKVELGNGKELQVE 360
                                            LKPVF ELNE EKLKVELGN KELQVE
Sbjct: 301 KGENKLFMINIPSDQKTTEVWFIDSGHLNHMTGLKPVFKELNEGEKLKVELGNSKELQVE 360

Query: 361 GKGMVGIETHHGNRILTNVQF-----------VPDI-GYNLLSVGQLMESGYSILFDDER 394
           GK M+GIETH+GNRILTNVQ            V ++  + L +         S L+   +
Sbjct: 361 GKRMMGIETHNGNRILTNVQTSFGESKDDPKEVSNVENFALTATATNTTKNNSELWHLSQ 420

[Close]

BLAST of Pay0008273 vs. ExPASy TrEMBL
Match: A0A5D3DWC7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00230 PE=4 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 3.0e-152
Identity = 322/554 (58.12%), Postives = 347/554 (62.64%), Query Frame = 0


Query: 1   MGNNGNAMGTTQPLIPIFKGEGYEFWSIRMKTLLRSQDLWDL-------------LRENR 60
           M NNGN MGT QPLIPIFKGEGYEFWSIRMKTLL SQDLWDL             L+ENR
Sbjct: 1   MSNNGNVMGTAQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  KKDSKALVIIQQAVHDSLILQKAFQGDSRVLVVKFQSLRRYFETLMMKNGESIADFCH-- 120
           +KDSKALVIIQQAVHD++         SR+      +  R FETLMMKNGESIADF    
Sbjct: 61  EKDSKALVIIQQAVHDNVF--------SRIAA----ATTRDFETLMMKNGESIADFLSRA 120

Query: 121 ----GQRQ-----LLDQTIVEKVLRSLTPRFDHVVAAIEESKNLSTFTFIELMGSLEAHE 180
                Q Q     + DQTIVEKVLRSLTP+FDHVV AIEESK+LSTFTFIELMGSL+AHE
Sbjct: 121 TTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLSTFTFIELMGSLQAHE 180

Query: 181 SRINRSMERNEEKAFQVKDTVSKYNDSDRVITRGQGRGGYRGRGRGTKKGCNRNEEQRQF 240
           SRIN SME+NEEKAF+VKD V KYNDSD V+T+GQG GGYR RGRGT KGCN+NEEQRQF
Sbjct: 181 SRINISMEKNEEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGRGTGKGCNQNEEQRQF 240

Query: 241 GVQSSNKANIQCYHCKKFGHVKADC----------------------------------- 300
           GVQSSNKANIQCYHCKKFGHVKADC                                   
Sbjct: 241 GVQSSNKANIQCYHCKKFGHVKADCWYKNHRANFTEQNEASENNGNGENKLFMTNIPSDQ 300

Query: 301 ------------------LKPVFNELNEREKLKVELGNGKELQVEGKGMVGIETHHGNRI 360
                             LKPVF ELNE EKLKVELGNGKELQVEGK  +GIETH+GNRI
Sbjct: 301 KTTEVWFIDSGHLNHMTDLKPVFKELNEGEKLKVELGNGKELQVEGKRTMGIETHNGNRI 360

Query: 361 LTNVQFVPDIGYNLLSVGQLMESGYSILFDD----------------------------- 394
           LTNVQ+VPDIGYNLLSVGQLMESG+SILFDD                             
Sbjct: 361 LTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEV 420

[Close]

BLAST of Pay0008273 vs. ExPASy TrEMBL
Match: A0A5D3DWP2 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00850 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 3.2e-146
Identity = 327/604 (54.14%), Postives = 340/604 (56.29%), Query Frame = 0


Query: 30  MKTLLRSQDLWDL-------------LRENRKKDSKALVIIQQAVHDS------------ 89
           +KTLLRSQDLWDL             LRENRKKDSKALVIIQQAVHDS            
Sbjct: 117 VKTLLRSQDLWDLVEQGYVDPDDEGKLRENRKKDSKALVIIQQAVHDSVFSRIATATTSK 176

Query: 90  ---LILQKAFQGDSRVLVVKFQSLRRYFETLMMKNGESIADFCHGQRQLL---------- 149
              LILQKAFQGDSRVL+VK QSLRR FETLMMKNGESIADF      ++          
Sbjct: 177 QAWLILQKAFQGDSRVLMVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYGETI 236

Query: 150 -DQTIVEKVLRSLTPRFDHVVAAIEESKNLSTFTFIELMGSLEAHESRINRSMERNEEKA 209
            DQTIVEKVLRSLTP+FDHVVAAIEESKNL TFTFIELMGSLEAHESRINRSMERNEEKA
Sbjct: 237 KDQTIVEKVLRSLTPKFDHVVAAIEESKNLFTFTFIELMGSLEAHESRINRSMERNEEKA 296

Query: 210 FQVKDTVSKYNDSDRVITRGQGRGGYRGRGRGTKKGCNRNEEQRQFGVQSSNKANIQCYH 269
           FQVKD V KYNDSDRV+TRG+GRGGYRGRG GT+KGCNRNE QRQFGVQSSNKANIQCYH
Sbjct: 297 FQVKDAVPKYNDSDRVMTRGRGRGGYRGRGHGTEKGCNRNEAQRQFGVQSSNKANIQCYH 356

Query: 270 CKKFGHVKADC------------------------------------------------- 329
           CKKFGHVKADC                                                 
Sbjct: 357 CKKFGHVKADCWYKNQRANFAAENEASENNGNCENKLFMTNIPSDQKTAEVWFIDSSCSN 416

Query: 330 ----LKPVFNELNEREKLKVELGNGKELQVEGKGMVGIETHHGNRILTNVQFVPDIGYNL 389
               LKPVF ELNE EKLKV+L NGKELQVEGKG V IETHHGNRILTNVQ+VPDIGYNL
Sbjct: 417 HMTGLKPVFKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGNRILTNVQYVPDIGYNL 476

Query: 390 LSVGQLMESGYSILFDD------------------------------------------- 394
           LSVGQLMESGYSILFDD                                           
Sbjct: 477 LSVGQLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEVSNVESFALTATATN 536

[Close]

BLAST of Pay0008273 vs. ExPASy TrEMBL
Match: A0A5D3CL10 (UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00080 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.6e-129
Identity = 265/374 (70.86%), Postives = 284/374 (75.94%), Query Frame = 0


Query: 43  LRENRKKDSKALVIIQQAVHDS---------------LILQKAFQGDSRVLVVKFQSLRR 102
           LR N+KKDSK LVIIQQAVHDS               LILQK FQGDSRVLVVK QSLRR
Sbjct: 17  LRMNKKKDSKVLVIIQQAVHDSVFSQIVIATTSKQAWLILQKEFQGDSRVLVVKLQSLRR 76

Query: 103 YFETLMMKNGESIADFCHGQRQLL-----------DQTIVEKVLRSLTPRFDHVVAAIEE 162
            FETLMMKNGESIADF      ++           D TIVEKVLRSLTP+FDHVVA IEE
Sbjct: 77  DFETLMMKNGESIADFLSRATTIISQMQTYSETIKDHTIVEKVLRSLTPKFDHVVATIEE 136

Query: 163 SKNLSTFTFIELMGSLEAHESRINRSMERNEEKAFQVKDTVSKYNDSDRVITRGQGRGGY 222
           SK+LSTFTFIELMGSL+AHESRINRSMERNEEKAFQVKD V KYNDSDRV TRG+GRGGY
Sbjct: 137 SKDLSTFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVLKYNDSDRVTTRGRGRGGY 196

Query: 223 RGRGRGTKKGCNRNEEQRQFGVQSSNKANIQCYHCKKFGHVKADC----LKPVFNELNER 282
           RGRG G +KGCN+NEEQRQFGVQSSNKANIQCYH KKFGHVKADC     +    +  E 
Sbjct: 197 RGRGCGIEKGCNQNEEQRQFGVQSSNKANIQCYHFKKFGHVKADCWYKNQRANSQQRMEH 256

Query: 283 EKL--KVELGNGKELQVEGKGMVGIETHHGNRILTNVQFVPDIGYNLLSVGQLMESGYSI 342
           +++  +VELGNGKELQVEGKG VGIETHHGNRILT                         
Sbjct: 257 QRIMERVELGNGKELQVEGKGTVGIETHHGNRILT------------------------- 316

Query: 343 LFDDERKLETFEKFKHFKAKVKKHSGMFIKSLRSDRGGEFLSNNFNHFCKEHGIHRELTT 385
           +F  + K ETFEKFKHFKAKV+K SGMFIKSLRSDRGGEFLSNNFNHFC+EHGIHRELTT
Sbjct: 317 MF--KSKSETFEKFKHFKAKVEKQSGMFIKSLRSDRGGEFLSNNFNHFCEEHGIHRELTT 363

[Close]

BLAST of Pay0008273 vs. ExPASy TrEMBL
Match: A0A5A7TZP7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00180 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 3.0e-120
Identity = 261/397 (65.74%), Postives = 280/397 (70.53%), Query Frame = 0


Query: 1   MGNNGNAMGTTQPLIPIFKGEGYEFWSIRMKTLLRSQDLWDL-------------LRENR 60
           MG+NGN MGTTQPLIPIFKGEGYEFWSI MKTLLRSQDLWDL             LREN+
Sbjct: 1   MGSNGNGMGTTQPLIPIFKGEGYEFWSIPMKTLLRSQDLWDLVEQGYVDPDDKGKLRENK 60

Query: 61  KKDSKALVIIQQAVHDSLILQKAFQGDSRVLVVKFQSLRRYFETLMMKNGESIADFCH-- 120
           KKDSKALVIIQQAVHDS+         SR++     +  R FETLMMKNGESIADF    
Sbjct: 61  KKDSKALVIIQQAVHDSVF--------SRIVA----ATTRDFETLMMKNGESIADFLSRA 120

Query: 121 ----GQRQ-----LLDQTIVEKVLRSLTPRFDHVVAAIEESKNLSTFTFIELMGSLEAHE 180
                Q Q     + DQTIVEKVL SLTP+FDHVV AIEESKNLSTFTFIELMGSLEAHE
Sbjct: 121 TIIISQMQTYGETIKDQTIVEKVLISLTPKFDHVVVAIEESKNLSTFTFIELMGSLEAHE 180

Query: 181 SRINRSMERNEEKAFQVKDTVSKYNDSDRVITRGQGRGGYRGRGRGTKKGCNRNEEQRQF 240
           SRINRSMERNEEKAFQ     + Y   ++ +            G+G  K    N      
Sbjct: 181 SRINRSMERNEEKAFQ-----ADYWYKNQRVNFAAENEASENNGKGENKLFMTN------ 240

Query: 241 GVQSSNKANIQCYHCKKFGHVKADC------LKPVFNELNEREKLKVELGNGKELQVEGK 300
            + S  K         +   + + C      LKPVF ELNE EKLKVEL NGKELQVEGK
Sbjct: 241 -ILSDQKTG-------EVWFIDSGCSNHMTGLKPVFKELNEGEKLKVELENGKELQVEGK 300

Query: 301 GMVGIETHHGNRILTNVQFVPDIGYNLLSVGQLMESGYSILFDDERKLETFEKFKHFKAK 360
           G VGIETHHGNRILTNVQ+VPDIGYNLLSVGQLMESG SILFDDE K ETFEKFKHFKAK
Sbjct: 301 GTVGIETHHGNRILTNVQYVPDIGYNLLSVGQLMESGLSILFDDESKSETFEKFKHFKAK 360

Query: 361 VKKHSGMFIKSLRSDRGGEFLSNNFNHFCKEHGIHRE 368
           V+K SGMFIKSLRSDRGGEFLSNNFNHFCKEHGIH E
Sbjct: 361 VEKQSGMFIKSLRSDRGGEFLSNNFNHFCKEHGIHSE 366

[Close]

BLAST of Pay0008273 vs. NCBI nr
Match: KAA0055915.1 (copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 556.6 bits (1433), Expect = 1.7e-154
Identity = 320/497 (64.39%), Postives = 347/497 (69.82%), Query Frame = 0


Query: 1   MGNNGNAMGTTQPLIPIFKGEGYEFWSIRMKTLLRSQDLWDL-------------LRENR 60
           M NNGN MGTTQPLIPIFKGEGYEFWSIRMKTLL SQDLWDL             L+ENR
Sbjct: 1   MSNNGNVMGTTQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  KKDSKALVIIQQAVHDS---------------LILQKAFQGDSRVLVVKFQSLRRYFETL 120
           +KD KALVI+QQAVHD+               LILQKAFQGDSRVLVVK QSL+R FETL
Sbjct: 61  EKDPKALVIVQQAVHDNVFSRIAAATTSKQAWLILQKAFQGDSRVLVVKLQSLKRDFETL 120

Query: 121 MMKNGESIADFCH------GQRQ-----LLDQTIVEKVLRSLTPRFDHVVAAIEESKNLS 180
           MMKNGESIADF         Q Q     + DQTIVEKVLRSLTP+FDHVVAAIEESK+LS
Sbjct: 121 MMKNGESIADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLEAHESRINRSMERNEEKAFQVKDTVSKYNDSDRVITRGQGRGGYRGRGR 240
           TFTFIELMGSL+AHESRIN SME+N+EKAF+VKD V KYNDSD V+T+GQG GGYR RGR
Sbjct: 181 TFTFIELMGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGR 240

Query: 241 GTKKGCNRNEEQRQFGVQSSNKANIQCYHCKKFGHVKADC-------------------- 300
           GT KGCN+NEEQRQFGVQSSNKANIQCYHCKKFGHVKADC                    
Sbjct: 241 GTGKGCNQNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNQRANFTEQNEASENNG 300

Query: 301 ---------------------------------LKPVFNELNEREKLKVELGNGKELQVE 360
                                            LKPVF ELNE EKLKVELGN KELQVE
Sbjct: 301 KGENKLFMINIPSDQKTTEVWFIDSGHLNHMTGLKPVFKELNEGEKLKVELGNSKELQVE 360

Query: 361 GKGMVGIETHHGNRILTNVQF-----------VPDI-GYNLLSVGQLMESGYSILFDDER 394
           GK M+GIETH+GNRILTNVQ            V ++  + L +         S L+   +
Sbjct: 361 GKRMMGIETHNGNRILTNVQTSFGESKDDPKEVSNVENFALTATATNTTKNNSELWHLSQ 420

[Close]

BLAST of Pay0008273 vs. NCBI nr
Match: TYK28117.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 548.1 bits (1411), Expect = 6.1e-152
Identity = 322/554 (58.12%), Postives = 347/554 (62.64%), Query Frame = 0


Query: 1   MGNNGNAMGTTQPLIPIFKGEGYEFWSIRMKTLLRSQDLWDL-------------LRENR 60
           M NNGN MGT QPLIPIFKGEGYEFWSIRMKTLL SQDLWDL             L+ENR
Sbjct: 1   MSNNGNVMGTAQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENR 60

Query: 61  KKDSKALVIIQQAVHDSLILQKAFQGDSRVLVVKFQSLRRYFETLMMKNGESIADFCH-- 120
           +KDSKALVIIQQAVHD++         SR+      +  R FETLMMKNGESIADF    
Sbjct: 61  EKDSKALVIIQQAVHDNVF--------SRIAA----ATTRDFETLMMKNGESIADFLSRA 120

Query: 121 ----GQRQ-----LLDQTIVEKVLRSLTPRFDHVVAAIEESKNLSTFTFIELMGSLEAHE 180
                Q Q     + DQTIVEKVLRSLTP+FDHVV AIEESK+LSTFTFIELMGSL+AHE
Sbjct: 121 TTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLSTFTFIELMGSLQAHE 180

Query: 181 SRINRSMERNEEKAFQVKDTVSKYNDSDRVITRGQGRGGYRGRGRGTKKGCNRNEEQRQF 240
           SRIN SME+NEEKAF+VKD V KYNDSD V+T+GQG GGYR RGRGT KGCN+NEEQRQF
Sbjct: 181 SRINISMEKNEEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGRGTGKGCNQNEEQRQF 240

Query: 241 GVQSSNKANIQCYHCKKFGHVKADC----------------------------------- 300
           GVQSSNKANIQCYHCKKFGHVKADC                                   
Sbjct: 241 GVQSSNKANIQCYHCKKFGHVKADCWYKNHRANFTEQNEASENNGNGENKLFMTNIPSDQ 300

Query: 301 ------------------LKPVFNELNEREKLKVELGNGKELQVEGKGMVGIETHHGNRI 360
                             LKPVF ELNE EKLKVELGNGKELQVEGK  +GIETH+GNRI
Sbjct: 301 KTTEVWFIDSGHLNHMTDLKPVFKELNEGEKLKVELGNGKELQVEGKRTMGIETHNGNRI 360

Query: 361 LTNVQFVPDIGYNLLSVGQLMESGYSILFDD----------------------------- 394
           LTNVQ+VPDIGYNLLSVGQLMESG+SILFDD                             
Sbjct: 361 LTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEV 420

[Close]

BLAST of Pay0008273 vs. NCBI nr
Match: TYK27735.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 528.1 bits (1359), Expect = 6.6e-146
Identity = 327/604 (54.14%), Postives = 340/604 (56.29%), Query Frame = 0


Query: 30  MKTLLRSQDLWDL-------------LRENRKKDSKALVIIQQAVHDS------------ 89
           +KTLLRSQDLWDL             LRENRKKDSKALVIIQQAVHDS            
Sbjct: 117 VKTLLRSQDLWDLVEQGYVDPDDEGKLRENRKKDSKALVIIQQAVHDSVFSRIATATTSK 176

Query: 90  ---LILQKAFQGDSRVLVVKFQSLRRYFETLMMKNGESIADFCHGQRQLL---------- 149
              LILQKAFQGDSRVL+VK QSLRR FETLMMKNGESIADF      ++          
Sbjct: 177 QAWLILQKAFQGDSRVLMVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYGETI 236

Query: 150 -DQTIVEKVLRSLTPRFDHVVAAIEESKNLSTFTFIELMGSLEAHESRINRSMERNEEKA 209
            DQTIVEKVLRSLTP+FDHVVAAIEESKNL TFTFIELMGSLEAHESRINRSMERNEEKA
Sbjct: 237 KDQTIVEKVLRSLTPKFDHVVAAIEESKNLFTFTFIELMGSLEAHESRINRSMERNEEKA 296

Query: 210 FQVKDTVSKYNDSDRVITRGQGRGGYRGRGRGTKKGCNRNEEQRQFGVQSSNKANIQCYH 269
           FQVKD V KYNDSDRV+TRG+GRGGYRGRG GT+KGCNRNE QRQFGVQSSNKANIQCYH
Sbjct: 297 FQVKDAVPKYNDSDRVMTRGRGRGGYRGRGHGTEKGCNRNEAQRQFGVQSSNKANIQCYH 356

Query: 270 CKKFGHVKADC------------------------------------------------- 329
           CKKFGHVKADC                                                 
Sbjct: 357 CKKFGHVKADCWYKNQRANFAAENEASENNGNCENKLFMTNIPSDQKTAEVWFIDSSCSN 416

Query: 330 ----LKPVFNELNEREKLKVELGNGKELQVEGKGMVGIETHHGNRILTNVQFVPDIGYNL 389
               LKPVF ELNE EKLKV+L NGKELQVEGKG V IETHHGNRILTNVQ+VPDIGYNL
Sbjct: 417 HMTGLKPVFKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGNRILTNVQYVPDIGYNL 476

Query: 390 LSVGQLMESGYSILFDD------------------------------------------- 394
           LSVGQLMESGYSILFDD                                           
Sbjct: 477 LSVGQLMESGYSILFDDGACLIKNKQTGRVLAKVKMTQSKMFPLEVSNVESFALTATATN 536

[Close]

BLAST of Pay0008273 vs. NCBI nr
Match: KAE8650579.1 (hypothetical protein Csa_010963 [Cucumis sativus])

HSP 1 Score: 486.5 bits (1251), Expect = 2.2e-133
Identity = 271/374 (72.46%), Postives = 290/374 (77.54%), Query Frame = 0


Query: 1   MGNNGNAMGTTQPLIPIFKGEGYEFWSIRMKTLLRSQDLWDL-------------LRENR 60
           M NNGNAMGTTQPLI IFKGEGYEFWS+RMKTLLRSQDLWDL             LRE R
Sbjct: 1   MDNNGNAMGTTQPLILIFKGEGYEFWSMRMKTLLRSQDLWDLVEHNYADPDDEGKLREKR 60

Query: 61  KKDSKALVIIQQAVHDS---------------LILQKAFQGDSRVLVVKFQSLRRYFETL 120
           +KDSKALVIIQQAVHDS               LILQKAF+GD RVLVVK QSLR+ FETL
Sbjct: 61  RKDSKALVIIQQAVHDSGFSRIGTTTTSKEAWLILQKAFRGDLRVLVVKLQSLRKEFETL 120

Query: 121 MMKNGESIADFCH------GQRQ-----LLDQTIVEKVLRSLTPRFDHVVAAIEESKNLS 180
           MMKN ESIA+F         Q Q     + DQTIVEKVLRSLT +FD VVAAIEESK+LS
Sbjct: 121 MMKNRESIANFLSRATTIISQMQTYGETITDQTIVEKVLRSLTLKFDQVVAAIEESKDLS 180

Query: 181 TFTFIELMGSLEAHESRINRSMERNEEKAFQVKDTVSKYNDSDRVITRGQGRGGYRGRGR 240
           TFTFIELMGSL+AHESRINRSMERNEEKAFQVKD V KYN+SDRV+TRG+GRGGYRG+GR
Sbjct: 181 TFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVPKYNNSDRVMTRGRGRGGYRGQGR 240

Query: 241 GTKKGCNRNEEQRQFGVQSSNKANIQCYHCKKFGHVKADC-------------------- 300
           GT+KGC +NEE+ QF VQSSNKANIQCYH KKFGHVKADC                    
Sbjct: 241 GTEKGCKQNEEKGQFRVQSSNKANIQCYHGKKFGHVKADCCDQKTAEVCFIDSGCSNHMT 300

Query: 301 -LKPVFNELNEREKLKVELGNGKELQVEGKGMVGIETHHGNRILTNVQFVPDIGYNLLSV 315
            LKP+FNELNE EKLKVELGN KELQVE KG VGIETHHGNRILTNVQ+VPDIGYNLLSV
Sbjct: 301 GLKPIFNELNEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNLLSV 360

[Close]

BLAST of Pay0008273 vs. NCBI nr
Match: TYK12002.1 (UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 472.6 bits (1215), Expect = 3.3e-129
Identity = 265/374 (70.86%), Postives = 284/374 (75.94%), Query Frame = 0


Query: 43  LRENRKKDSKALVIIQQAVHDS---------------LILQKAFQGDSRVLVVKFQSLRR 102
           LR N+KKDSK LVIIQQAVHDS               LILQK FQGDSRVLVVK QSLRR
Sbjct: 17  LRMNKKKDSKVLVIIQQAVHDSVFSQIVIATTSKQAWLILQKEFQGDSRVLVVKLQSLRR 76

Query: 103 YFETLMMKNGESIADFCHGQRQLL-----------DQTIVEKVLRSLTPRFDHVVAAIEE 162
            FETLMMKNGESIADF      ++           D TIVEKVLRSLTP+FDHVVA IEE
Sbjct: 77  DFETLMMKNGESIADFLSRATTIISQMQTYSETIKDHTIVEKVLRSLTPKFDHVVATIEE 136

Query: 163 SKNLSTFTFIELMGSLEAHESRINRSMERNEEKAFQVKDTVSKYNDSDRVITRGQGRGGY 222
           SK+LSTFTFIELMGSL+AHESRINRSMERNEEKAFQVKD V KYNDSDRV TRG+GRGGY
Sbjct: 137 SKDLSTFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVLKYNDSDRVTTRGRGRGGY 196

Query: 223 RGRGRGTKKGCNRNEEQRQFGVQSSNKANIQCYHCKKFGHVKADC----LKPVFNELNER 282
           RGRG G +KGCN+NEEQRQFGVQSSNKANIQCYH KKFGHVKADC     +    +  E 
Sbjct: 197 RGRGCGIEKGCNQNEEQRQFGVQSSNKANIQCYHFKKFGHVKADCWYKNQRANSQQRMEH 256

Query: 283 EKL--KVELGNGKELQVEGKGMVGIETHHGNRILTNVQFVPDIGYNLLSVGQLMESGYSI 342
           +++  +VELGNGKELQVEGKG VGIETHHGNRILT                         
Sbjct: 257 QRIMERVELGNGKELQVEGKGTVGIETHHGNRILT------------------------- 316

Query: 343 LFDDERKLETFEKFKHFKAKVKKHSGMFIKSLRSDRGGEFLSNNFNHFCKEHGIHRELTT 385
           +F  + K ETFEKFKHFKAKV+K SGMFIKSLRSDRGGEFLSNNFNHFC+EHGIHRELTT
Sbjct: 317 MF--KSKSETFEKFKHFKAKVEKQSGMFIKSLRSDRGGEFLSNNFNHFCEEHGIHRELTT 363

[Close]

BLAST of Pay0008273 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 7.8e-04
Identity = 20/70 (28.57%), Postives = 35/70 (50.00%), Query Frame = 0


Query: 15 IPIFKGEGYEFWSIRMKTLLRSQDLWDL---------------------LRENRKKDSKA 64
          +P+     Y+ WS+RMK +L + D+W++                     LR++RK+D KA
Sbjct: 10 VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKA 69

The following BLAST results are available for this feature:

BLAST of Pay0008273 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.8e-13	49.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.8e-09	36.27	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.8e-05	37.35	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q87040	2.4e-05	51.11	Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) OX=298339 GN=pol ...	[more]
P14350	1.5e-04	48.89	Pro-Pol polyprotein OS=Human spumaretrovirus OX=11963 GN=pol PE=1 SV=2	[more]

BLAST of Pay0008273 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQM0	8.3e-155	64.39	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 ...	[more]
A0A5D3DWC7	3.0e-152	58.12	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DWP2	3.2e-146	54.14	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CL10	1.6e-129	70.86	UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TZP7	3.0e-120	65.74	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Pay0008273 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055915.1	1.7e-154	64.39	copia protein [Cucumis melo var. makuwa]	[more]
TYK28117.1	6.1e-152	58.12	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
TYK27735.1	6.6e-146	54.14	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAE8650579.1	2.2e-133	72.46	hypothetical protein Csa_010963 [Cucumis sativus]	[more]
TYK12002.1	3.3e-129	70.86	UBN2 domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0008273 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48720.1	7.8e-04	28.57	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 227..243 e-value: 0.0085 score: 24.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 228..241 score: 8.976924
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 310..396 e-value: 5.3E-21 score: 77.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..218
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 29..311
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 29..311
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 340..396 score: 13.46307
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 317..392

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0008273.1	Pay0008273.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding