Pay0003885 (gene) Melon (Payzawat) v1

Overview


Name	Pay0003885
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr03: 7354336 .. 7366356 (-)
RNA-Seq Expression	Pay0003885
Synteny	Pay0003885

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTGATGAACAAAGTGTTTAGGGAGTTCTTAGATACTTTTGTGATCGTGTTTATCGACGACATCTTGATATACTCCAAGACGGAGGCCAGACATGAGAAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCGAAGTTCTCGAAATGTGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGTCACGTGGTTTCTAAGGCTGGGGTCTCTGTGGATCCAGCTAAGATCGAGGCAGTCACCGGTTGGACCCGACCTTCCACTGTCAGTGAGTTCGTAGCTTTCTGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCTGTATAGCTACTCCTCTTACTCAGTTGTCCAGAAAGGGAGCTCCTTTTTTTGTTTGGAGCAAGGCATGTGCGGACAGTTTCCAGAACCTTAAGCAGAAGCTAGTTACTGCATCGGTTCTTTCTTACTGTACTTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAGGGGTTTGGGTTGTGTTTTGATGCAGCAGGGTAAGGTGGTCGCTTATGCGTCTAGTCAGTTGAAGATCCATGAGCAGAACTACCCTACACATGATCTAGAGTTGGCAGCGGTGGTTTTTGCTTTAAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATATTTACAGATCATAAGAGCTTGAAACACTTCTTTACTCACTCAGAATGAGTTGAATATGAGACAACGAAGATGGTTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCGAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCGGCAGCACTTATTACCCGACAGGCCCTTTTGCATCGGGATCTCGAGCGGACTGAGATTGCAGTATCAGTGGGGGCAGTTACTATGCAGTTAGCCCAGTTGACGGTCCAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATTCTTATTTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCGAGCGGTTGAGTTCTCATTATCCTCTGATGGGGGACTTTTGTTCGAGAGACGCCTCTGTGTGCCGTCGGATAGTGCGGTTAAGACAGAATTATTATCTGAGTCTCACAGTTCCCCATTTTCCATGCATCCAGGTAGTACAAAAATGTATCAGGACCTGAAACGGGTTTATTGGTGGCGTAACATGAAGGGGGAAGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGGCAGCAGGTTAAGGCACCAAGGCAGAAAACAGCGGGTTTATTACAACCCTTGAGTGTGTCGGAATGGAAGTGGGAAAACTGTCCATGGATTTCATTACGGGACTGCCGAGGACTCTGAGGGGTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTATCAAGTCAGCACACTTTGTTCCGGGTAAATCAACCTATACTGCTAGTAAGTGGGCACAGTTGTACATATCCGAGATAGTGAGGTTGCATGGGGTGCCAGTGTCGATTGTTTCTGATAGAGATGGCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACCGCTATGGGCACGAGTTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTTAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTCCCAGGTAGCTGGGACTCCCATTAATTTGATGAATTTTGCTTATAATAACAGTTATCAGCCTATTGGCATGCACCATTTGAGGCTTTGTATGGCAAATGTTGTAGATCCCCGGTCTTCTGGGGCGAAGTGGGAGAGCAAAGATTGATGGGTCCTGAGTTAGTTCTGTCTACTAACGAAGCGATACAGAAGATTGGATCACGCATGCATACCGCTCGGAGTAGGCAGAAGAGTTATGCAGATGTGGGGCGGAAGGATCTTGAGTTTTAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGTGTCGTGCGTTTTGAAAGGAGGGGAAAGCTGAGTCCCCGCTTTGTTGGACCATTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATAGCTTGGCGTTGCCACCATCACTTTCGACAGTTCACGATGTGTTCCATGTCTCCATGTTGAGGAAGTACGTGCCAGATCCATCCCGTGTAGTGGATTACGAGCCACTGGAAATTGATGAAAACTTGAGCTATACCGAACAACCTGTTGAGGTGCTGGCTAGAGAGGTGAAAACGTTGAGGAATAAAGACATTCCTTTGGTTAAAGTCTTATGGCGGAATCACCGGGTGGAAGAAGCTACATGGGAGCGAGAAAATGACATGAGGTCCCGTTAATCTCGATCTGTTCGAGGAAAAAAACTTTCGAGGACGAAAGTTCCCTAAGGAAGGAAAAATGTAACGCCCCGAGTTCGAGGTAAAAATTTTAGAATTTTAAGTGAATTGTTCGGAAATTTGAATTTTGGTAAAACGATAAAATAATAATATAATGTTGATTAGATTATTATTATCGTGAATTATTATTACAATTTTTTTTATGTTAATATTTTCTTTATATTTAATTTAAAAATAAATATAATATTTTTATTTAATATTATTATAATTAATTAATAATTAATATTCTATTAATAAGATTTATATTAATTTTATTCAATATATATAATATATCATTATTTATTTTTATTATATTTAATATTATTATTATTATTATTATTATATTTAATTTAATTACATATATTTTATTATTAATTATATATTATATATATATATATATTTTAAAAAAAAAGAGGAAGAGAAACCCTAGTCCCTCTCCTGCGCGCCGCACCCCCCTCCGTTTTTCCGATTTTCCGCCGCCTCATTTCTTCTTCTTCTTCTTCTCCTGCCCGCTGGGTTTCCTTCCTCTTCGTTCTCCTTCGTCCATTTCTCTTCTCCCACACCCGACGCCACCATTTCTTTTGCTTCTTCTTCTCTTCAGTTTCGTCGCCGCCGTCTTCGTGGCCGCACACCACCAACGAATCCCACCTCGGCACTCGTCTTCCGCCCGCGAACGGCCGCGCGACCCCGCAAGCAGCCATCCCCGGCGTTCCTCTCTCTCTTTTCGTCTCTATCTTCGACCGACGACCTTTGTTTCGTCTCCGCCTTCGACCGCCGTCGCCATCGGAAGAGAAGGGATTGAACCCGAGTCGTACCCGACCCGAGACCCAATTCCAGCCGCGAGCCGCCAACAATCCCAGCCGCGAGCCGCTAGCAATCCCAGTCCGAGCCGAGTGAGCCGCGTGAGCCGAGCCGAGCGAGCTGAGCGAGCCGAGTGAGCCGAGTGAGCCAAGCCGAATGAGCCGGGCGAGCCTAGCCGCGAGCCGAGCCGAGCCGAGACGAGCCGAGGCCGAGCCGAGCCGAGAACCAAGCCGAGCCGAGCCGAGTCGAGCCGAGCCGAGAACCAAGCCGAGCCGAGCTGAGCCGAGCCGAGCCGAGTTAAGCCGAGCCGAGTCGAGCCAAGCCGAGCTGAGCCGAGGCCAAGCCGAGCCGAGCCGTGAGCCGAGGCCAAGCCGAGCCGAGCCGAGCCACCTAAGCCTTTCCTTCCTCCACTTCGGGTCACGGTGAGTCTTCGGTAAGGAGTTGTTTTGATGAATTCCCTAATGTTGCCATATCCGATTCGAGTTGATTATTGGAATAAGCTTTGACCCTATCTTTCAGCCCTTAAAGGTAGTAAAGAATTGACGTTTAAGCTCTCGGGTTCTGCGGCAGGCTTGGTTGGAGATAGCTTGTAACGCTCCGAAAATTTAAGGTAAAATTTTTCTCGTTTTATGTAAAGTGCAAGTTGACATAATAATAATACATAATATAATTATATATTATTATTAATAATTTATTTTATTTGTTATAATAATAATATTTCAATATTATTATTAATTAATATTATAGAAATATTGTTATATTTAAAAACAATAAAAATAAATTATTATTTATTTAATTATTAATGTTATTAATATATTATTATTAATTACTTTATTATTATTATTTATTATTTATATTTAACATATATATTATTATTTATTTAAATTATTATTTATATAATACTAAGGGTTATATATATAATATATATATATATATAATAATTTTTTTTAAAAAAAAGAGAGCAACCCTAGCCGCGCGCGCCCCCCCGACTTCATCTTTTTCTTCTTCCTCCGTTCTTCGCCTGACAGCTCGTCTGCCTTCACGAAGCGCCGCCGCTATTTTTCTCCCTCTCCTTCTTCCTCTCTTCGGCTCCTTCACCCGACGAACACAGACGCCATCCGTGCGCCTTCGACGACCGCCGTTTCTCTCCATCCGCACCTCACCGACGACAGCAGACGTTCGTCCGCCGCGGCTCCCCATCCATTTCCGATTTTTCCTTCTCGGCCTCACACAACGGCAGATTTGCCGCCGCTCGTCGCCGCTCGACGAAGCAGTCACTCGCATCCCTCGTGTGTTGTCCGCGAATCGTCGCCGCCGTCGCTCGCCGGGGGAGAATCGATCACCGTGGCTGCAGTTTTCATCCATCCGACCCGAGGACCCGCATTTAACACGAGACCCGCTTCCAGTCTGAGCCGAGTGAGCCGTGTGAGCCGAGCCGAGCGAGCTGCGAGCCGTACCCGAGCCGCTATCCTTGTCTGAGCCGAGCCCTAAGCCAAGCGAGCCGCGAGCCGAGTGAGCCGAGCCGCGAGCCGAACCAGGCCGGGCCGCGGGCCGGGTGAGCCGGGCCGAGCGAGCCGAACCAAGTCGAGCCGCGTGTTGAGCCGAGCTGCGAGCCGAGCAAGCCGAGCGAGCCGAGCCGAGCCGAGCCGAGCCCGAGCCGGCCAACCCAAGCCGCGAGCCGAGCCACCTAAGCCTTCTTTCCTCCACTTCGGTTCACGGTGAGTCTTCGGTAAAGGATTGTTTTGATGAATTCCTTAATGTTACCTCGTCCGATTCAAGTTTGAATGTTGGATTAAGATATGGCCCTATTTCTCTCCCTTGAAGGTAGTACAGAGTTGACGTTCAAGTTCTCGGGTTCCGTGGCAGACCTGGTTGGAGATAGCTTCATTTCCTTGGGTAAGTCAACGGATAACCTTTTTAAAACAACTGCTACTAAAGTCATCAACTAAAACTTTCGTGTTTCGTTAGGTAGATCTGTCGAGCGTGGATTTCGATCGAGGGGCATAACCGAGTTTCAGGTAAGGGTTTTCCTACTACTGGACCCCGAGTCCAGGCTAAAACCGTAGTAATCCACAGGGGATTACACGTTAGTGACTGTACTGAATATCTGTATGCGTGTTGACTGTTAAGTACTGATATTATATTAACACTGGTCTGTATGTGGTTCATGGAGTTTGGACGGGGAAAAACAGTGAGTCCAGTTCTGGTTGGTTAGTCGATTGAATTTAGGGTTTTCCCTAATGGCGTACGAATCGGTAATGCATATAGCAACTGAGGGTGTAGATGTTTAAACCTATACTATCTGACTGACAAAGCCTATGGCGGGACTGTGATATGAATGCCGTTGGGATGTGATTGATGTAGACAGTTTAGTTTGGCCTGAGGGGTAACGGTTAGCTTCATCTATGGGGTAGTGTGCCTTACGGAATTGTGCATCCTTCAGGAGCATTAAAGACTGATATTTGCATCCTTCGGGAGCACTAAGACTGATATGTGCATCCTTCGGGGGGACTAGACTGATATGTGCGTCCTTCGGGAGCAATAGACTGATATGTGCGTCCTTCGGGAGCACTAGACTGATATATGTGCATCCTTCGGGAGCACTAGACTGATAGTGCATCCTTCGGGATCACTAAACTATATGTGCATCCCTTCGGGAGCAACTAGACTGATATTGCATCCTTACGGGAGCACTAGACTGTTATGTAGGGTACCCCCGAATAGGAAGTAAACTGTTGTCCCCTAACAAGGGCCCAGTAGTGGGTCCCCTTACTGGGTATGTTTATACTCACCCTTTCTCTTCTTTAACTTTTCAGGTAGGGGTACAGCGAGGGGCAGACCGACGAGAGGCAGGAAGGATGCGTGAAGGTCATATGGACGTGTCTGGTTTCTTTTCGCTTCCGCTATGTATTTTTGTCAGAATATTTTGACTGTGATTTTGGACTGGTGACTTGACTTTTTATTTTGTGATTTTTAATTTATTTAAAATAGGGCCCGAAACTGTCTTTTGTAAGGTTTATAATGTTTTATGAATCGTAATCTGGTCCGTTGAATTTTTATGTTGAAATGTCGGAGTTTTTGATATTTGGTAAGTGACCTCAGCTTCGTCCGGAAAAGTTGGGTCGTTACAATAGCTTCCTTCTTTCCTCGGGTAAGTCAACGGATGTGCTTCGGACCTTCTAAAACGACTTCTACTAAATTCATCAACTAAAACCTTCGTGTTTTCGTTTTAGGTTGAGCTGTTGAGCGTGGATTTCGATCGAGGGGCATAATCGAGTATCAGGTAAGGGTTTCCTACTACTGGACCTCGGATCGAGGCCGGAAACGTAGTAATCCAAAGGGGATTACACGTTAGTGACTGTACTGAATAACTGTCTGTGTGTTGACTGTTAAGCACTGTTATTATATTTTGTCTGGTGTAAGGGTACTGAGACTGCTATCTGTAGATTGGGATTTTATGCGGATGGACCTTGAAGTTACGGTTCAGTATGTAGAAATCATTGGTCTGGATGTTGTTCATGGAGTTTGGACGGGGGAGGACAGTGAGTCCGGTTTTGGTGGGTTAGTTGATTGGGTCTAGGGTTTCCCTAATGGTGTGCGAATTGGTGATGCGTATAGCAACTGAGGGTGTAGTTGTTTAAATCTATGCTGTCTGACTGATAAAGCCTATGGCGAAATTGTAATATGAATGTCGTTGGGGTGTGACTGTGTAGACGGTTTAGTAATGGACTGAGGGGTAACGGTTAGCTTCATCTATGGGATAGTGTGCCTTACGGTTATGTGCATCCTTCGGGAGCACTAGACTGATATGTGCATCCTTTCGGGGGCCAACTAGACTGATGTGTGCATCCTTTGGGAGCACTAGACCGATATGTGCATCCTTCGGGAGCACCCAAGACTGATGTGTGCATCCTCCGGGGAGCACTAGACTGATATGTGCATCCCTTTCGGGAGCACAAGACTGATCTGTGCATCCTTCGGGGGCACTAGACCGATATGTGCGTTCTACGGAACACTCGAGACTGTTATGTAAGGTACCCCCGAATAGGAAGTTAACTGTTGTCCCCTAACGGGCTCAGTAGTGGGTCCCTTACTGGGTATGTTTATACTCACCCTTTCTCTGCTTAACTTTTCAGGTAAGGGCACAGCGAGGGGCAGACCGACGAGAGGCAGGAAAGACGCGTGAAGGCCATATGGAAGCGTCTGGTTTTCTTATCGCTTCCGCTATGTATTTTGTCCGAATATTTTGACTTGTGATTTTTGGACTGATGATTTGAGTTTTTGTTTGAGACTTTTTATGATTGATTTAAAATAGGGCCCGAAACTGTCTTTTTTTGTAATGTTTCTAATGTTTTAATGAATCGTAACTGTTCCGTTTTAAATTTTATGTTGAATGGTCGATTTTTGGTATTTGGTAGTGACTCAGCTTAGTCCGGAAAGTTGGGGTGTTACACATTATATATATAGTTTATATTTTATTAGACTTTATTATATAAATTTATTTTTGGATATGATTCAAAATTAAATTAGAGAGAATAAAATATTAGTTTAATGTGAAATAGATTCATACTAAAACTATAAATTAAAATTAATATGTGTGTGTGGATACATAATTAAAACTATAGGTTCATGAGAAGAATTTTATATTTGAATATGGTTCAAATTTTGGATTAAATTAAATATAAGATATTTAATTTAGAAATTAATTAATTTTAGAATTAATAATATTTTATTTTAATTTGATTTAATTTAATATGCCTTTATTAAATTATTAAATTAAAACTACAGGATATGTGAAAGATATTCATTTAAATATGAATTTAAATGAAAATATTAATTAAATTTGATTTACTTTAATTATTAATTAATTATTATTTTAATATATTATTAATTCTAATTAATAATATAAATTCTAGGACATTGAGTGGTTTTTCCACGTTTTCATTTATTCTCTCAACTTCCCACTTCTTCCGTCTGAAGAATAGGAAATTTTTTGTGTAACAAAAACAGAAGAATTGTTATGTGTGTTATGCGATTCTGAAGACTCTCTGATCCTCTCTGAAAAAAGTTTTTTCTCTGTAAAATAAAAATTTCCTCAATCCAATTTGGTTCCCACAAACCACCTCAATTCAGAGAATATGAAGGTTTCCAAGTGGTGGTGTTCCCCAATTTGGAGTTTTATAGATACAAAGACGTCAACGATCGTAAGTTTCATTTTCTTTATTCTTCTCTGTTTTTTTTTCTTGAAAGCATGCTTAGCCATAGAAATTAATTTTATAATTATTTTGCCAATGTATTGGTATTTTTTTAGGTTCCAATTAAAATTGGGTTAAGGTCTCTGTAATTCTTCCGCTGTAAAGGCCTTTTTATCCCTTCACCAGTAACCTAGTTCATCAGGTGCCCAGAACACCAATGAATATATGTAACATGTTACTGTAAATTCAATATTAATGGTGTACATGTAACAGAAAAAATACACTGTATTGGTATGGCAGGGAGTAAGACTTTTTGAAGAGCACTTGATAATGTGAAGAGGATCAAGAAGAAAGATGAGCTGAAGATCTGTGTAACGCCAACATTTTCGGGTTTCCTTTGTTATTTTTGGACGCACTAATAATAATTAATATTAAAGTGTGGTTATGGGAATTTTAAACTTATTGGAAGAACCTTGTTTATGTTTTTATAAATGAATTTCTTGAACCGTATGCTTTTAATAAAATTTTTATACTTAAACCACTTGTTCTATACTTAGTAATGACTTCGATTCAACATAAGGAGTTGGGTCCGTTACAGTTAGTATCAGAACATGAGTTTTTAGGTTTTGTAGACTGACTTACAATGTAAGTCATTTTTGTTTTTGTTTTTACTTCAACCTATGGCAATACGGTCCCTTCGGCACTCGGCAGGTATGTCTAAAGCCTTGCTAATGTTAAGATTACAATTTGGCCTGAATAGTCTAAGACCTAGATATAAGGTGATAAGTTCTTGTGGTGAAAAGTTGGTTGGTGAATTTTAGGGAGAATGCCGCCACGTAGAGGTACACGCCGAGGAGGTGGTAGGGGAGGCAGAGGAGCCGGTCGTGGCCAGCCGGAGGCGCCCCCTGTTGCACCGGCAGTCGACCCAAACGCACCGGTCACCCAGGCGGATCTCGCCGCGATGGAGCAGCGTTATCAGGACATGCTGCAAGCTGCTTTGGCGCCTTTCCTTGCCGCCCAACAGAACCAGGCCGCCCCTGTTCAGGCCGAGGCCGCCCTGCTCAGGCCCAGGCCGCCCCTGTTCAGGCTCAGGCCGTCGCTCCTCCACCCCCTGAGGAAGCTCAACCAGTACGAGTTCAACTGTCGGCCGAGGCGAAACACTTACGGGATTTAAGGAAGTATAATCCCAAGACCTTTGACGGATCCATGGACAACCCCACAAAGGCCCAAATGTGGTTGACGTCCATAGAGACCATTTTCCGGTACATGAAGTGCCCAGAAGATCAGAAGGTCAGTGTGCCGTCTTCTTCTTGGAGGACAGGGGCACCGCCTGGTGGGAGACCGCGGAGAGAATGCTAGGGGGCGATGTAAGCAAAATAACATGGGAGCAGTTCAAGGAGAACTTCTATGCTAAGTTTTTCTCCGCCAAGGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGGGCAAGGCGACATGACGGTGGAGTAGTACGACGCCGAGTTCGATATGCTGTCCCGCTTTGCTCCCAATATGGTAAGGGATGAGGCTGCCAGAGCTGATAAGTTTGTTAGAGGACTCAGGCTAGACCTTCAGGGCATTGTCAGAGCCCTCCGCCCAGCCACGCATGCTGATGCACTACGTATAGCACTGGGTTTGAGCCTGCCTGAGAGAGCCGATGCGTCTAAGGCTGCCGGCAGAGGGTCAGCCTTGGGACAGAAGAGAAAGGTGGAGACGCAGCCTGACGTAGCACTGCAGCGAACACTGAGGTCAGGAGGTGTCTTCCAGAGACACCGACGGGAGCTTGCGGCAGCCGGGAGGACTCTGAGAGAGCTACCTGCTTGTACTACCTGCGGGAGAGTCCACGGAGGTCGTTGCTTGGCTGGGAGTGGAGTCTGCTTCAGGTGCAGACAGCCGGGGCACACTGCTGATGTGTGTCCTCGGAAACCCTTTGAGGCGACACCGCCCCAGCCTTCTGCGGCCCAGCAGGGGAGAGTTTTCGCCACCACCCAGCAGGAGGCCGAGCGAGCTGGCACTTGTGGTTACAGGTACGCTCCCAATTTTGGGTCATTATGCTTTTGTGCTATTTGACTCTGGGTCATCCCACTCGTTTTTATCCTCCGTTTTCGTTCAGCATGTGGGTTTAGAGGTAGCGCCTTTGGGTAGTGTTTTGTCGGTTTCTACTCCATCTGGGGAGGTCCTGTTATCCAAAGAACAAATAAAGGCATGTCGGTTAGAGATTTTGCGAGTCGTATGTTAGACGTGACCTTGTTAGTGTTAGACATGCAGGATTTGATGTGATACTAGGCATGGATTGGCTATCAGCCAACCATGCAAATATAGACTGTTATGGCAAGGAAGTTGTCTTTAACCCTCCCTCTGGGGCTAGTTTCAAATTCAGGGGGGCAGGCATGTTATGTATACCCAAGGTCATCTCCGCCATGAAGGCTAGTAAACTACTCATCCAGCCATGGTACTTGGGGTATTTTGGCAAGCGTAGTGGATGTGAGAGAGCCAGAAGTTTCCTATCTTCCGAACCAGTGGTAAGAGAGTACTCCGATGTTTTCCCCGACGAGCTCCCAGGACTTCCGCCTCCCAGAGATGTAGACTTCGCTATCGAGTTAGAGCCTGGCACTGCCCCAATCTCGAGGGCCCCTTACAGAATGGCTCCAGCCGAACTAAAGGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCGCCTTGGGGAGCCCCAGTATTGTTCGTGAAGAAGAAGGATGGGTCAATGCGCCTTTGTATTTACTACCGAGAGCTGAACAAGGTGACAGTCCAAAAACCGCTACCCTTGCCCAGGATTGATGACCTGTTCGACCAGTTGCAGGGAGCCACCGTCTTCTCCAAGATCGACCTGCGATCAGGCCATCACCAGTTGAGGATTAGGGACGGTGACATTCCCAAGACGGCTTTTCGATCGAGGTACGGACATTACGAATTCGTGGTGATGTTTTTCGGCTTGACTAACGCTCCCGCAGTATTCATGGACTTGATGAAAAGAGTGTTTAAGAATTTCTTAGACACTATCGTGATTGTATTTATTAATGATATCTTAGTTTACTCCAAGACAAAGGCTGAGCATGAGGAGCACTTGCACCAAGTTTTGGAGACTCTTCGAGCCAACAAGTTGTATGGCAAGTTCTCCAAGTGTGAATTCTGGGTAAGGAAGGTGACGTTCCTTGGCCACGTCGTTTCCAGTGAGGGAGTTTCAGTAGATCCCGCAAGGATTGAAGCGGTGACCAACTGGCCCCGACCGTCCACGGTTAGTGAAATTCGAAGTTCTCTGGGCTTGGCAAGGTTACTACAGGGGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCGTTGACCCATTTGACCAAGAAGGGAACCCCCTTTTGTCTGGAGCCAAGCTTGCGAGCGGAGCTTTCAGGAGCTCAAACAGAAGCTAGTGACTGCACCGGTCCTGACCGTGCCCGATGGTTCGGGAAACTTTGTAATCTATAGTGACGCCTCCAAAAAGGGACTAGGTTGTGTTCTGATGCAGCAGGGTAAGGTAGTTGCTTATGCCTCCCGCTAG

mRNA sequence

ATGGACTTGATGAACAAAGTGTTTAGGGAGTTCTTAGATACTTTTGTGATCGTGTTTATCGACGACATCTTGATATACTCCAAGACGGAGGCCAGACATGAGAAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCGAAGTTCTCGAAATGTGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGTCACGTGGTTTCTAAGGCTGGGGTCTCTGTGGATCCAGCTAAGATCGAGGCACTTTCTGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCTGTATAGCTACTCCTCTTACTCAGTTGTCCAGAAAGGGAGCTCCTTTTTTTGTTTGGAGCAAGGCATCTTGCGAGCGGAGCTTTCAGGAGCTCAAACAGAAGCTAGTGACTGCACCGGTCCTGACCGTGCCCGATGGTTCGGGAAACTTTGTAATCTATAGTGACGCCTCCAAAAAGGGACTAGGTTGTGTTCTGATGCAGCAGGGTAAGGTAGTTGCTTATGCCTCCCGCTAG

Coding sequence (CDS)

ATGGACTTGATGAACAAAGTGTTTAGGGAGTTCTTAGATACTTTTGTGATCGTGTTTATCGACGACATCTTGATATACTCCAAGACGGAGGCCAGACATGAGAAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCGAAGTTCTCGAAATGTGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGTCACGTGGTTTCTAAGGCTGGGGTCTCTGTGGATCCAGCTAAGATCGAGGCACTTTCTGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCTGTATAGCTACTCCTCTTACTCAGTTGTCCAGAAAGGGAGCTCCTTTTTTTGTTTGGAGCAAGGCATCTTGCGAGCGGAGCTTTCAGGAGCTCAAACAGAAGCTAGTGACTGCACCGGTCCTGACCGTGCCCGATGGTTCGGGAAACTTTGTAATCTATAGTGACGCCTCCAAAAAGGGACTAGGTTGTGTTCTGATGCAGCAGGGTAAGGTAGTTGCTTATGCCTCCCGCTAG

Protein sequence

MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEALSGLAGYYRRFVENFSCIATPLTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASR

Homology

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BLAST of Pay0003885 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 63/189 (33.33%), Postives = 102/189 (53.97%), Query Frame = 0


Query: 4   MNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWLKQV 63
           MN + R  L+   +V++DDI+I+S +   H   +++V   L D  L  +  KCEF  K+ 
Sbjct: 348 MNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEA 407

Query: 64  SFLGHVVSKAGVSVDPAKIEAL---------------SGLAGYYRRFVENFSCIATPLTQ 123
           +FLGH+V+  G+  +P K++A+                GL GYYR+F+ N++ IA P+T 
Sbjct: 408 NFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTS 467

Query: 124 LSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQ 178
             +K        K     +F++LK  ++  P+L +PD    FV+ +DAS   LG VL Q 
Sbjct: 468 CLKKRTKIDT-QKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQN 527

[Close]

BLAST of Pay0003885 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.0e-26
Identity = 64/189 (33.86%), Postives = 103/189 (54.50%), Query Frame = 0


Query: 4   MNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWLKQV 63
           MN + R  L+   +V++DDI+++S +   H + L +V + L    L  +  KCEF  ++ 
Sbjct: 349 MNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQET 408

Query: 64  SFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATPLTQ 123
           +FLGHV++  G+  +P KIEA+                GL GYYR+F+ NF+ IA P+T+
Sbjct: 409 TFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK 468

Query: 124 LSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQ 178
             +K       +    + +F++LK  +   P+L VPD +  F + +DAS   LG VL Q 
Sbjct: 469 CLKKNMKIDT-TNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD 528

[Close]

BLAST of Pay0003885 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-20
Identity = 63/199 (31.66%), Postives = 101/199 (50.75%), Query Frame = 0


Query: 4   MNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWLKQV 63
           ++ V RE +     V++DD++I+S+ E+ H +H+  VL+ L D  +     K  F+ + V
Sbjct: 324 LDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESV 383

Query: 64  SFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATPLTQ 123
            +LG +VSK G   DP K++A+                GLA YYR F+++F+ IA P+T 
Sbjct: 384 EYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITD 443

Query: 124 L--SRKGAPFFVWSK-------ASCERSFQELKQKLVTAPV-LTVPDGSGNFVIYSDASK 178
           +     G+     SK        +   +FQ L+  L +  V L  PD    F + +DAS 
Sbjct: 444 ILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASA 503

[Close]

BLAST of Pay0003885 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.4e-20
Identity = 60/203 (29.56%), Postives = 104/203 (51.23%), Query Frame = 0


Query: 3   LMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWLKQ 62
           +++ + RE +     V+IDDI+++S+    H K+LR+VL +L    L     K  F   Q
Sbjct: 264 MIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQ 323

Query: 63  VSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATPLT 122
           V FLG++V+  G+  DP K+ A+S               G+  YYR+F+++++ +A PLT
Sbjct: 324 VEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLT 383

Query: 123 QLSR---------KGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASK 178
            L+R         + +   +    +  +SF +LK  L ++ +L  P  +  F + +DAS 
Sbjct: 384 NLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASN 443

[Close]

BLAST of Pay0003885 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-18
Identity = 59/194 (30.41%), Postives = 94/194 (48.45%), Query Frame = 0


Query: 3   LMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWLKQ 62
           +M   F     +   +++DD+++   +E    K+L  V    R+  L     KC F++ +
Sbjct: 456 MMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHE 515

Query: 63  VSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATPLT 122
           V+FLGH  +  G+  D  K + +                    YYRRF++NF+  +  +T
Sbjct: 516 VTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHIT 575

Query: 123 QLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQ 178
           +L +K  P F W+   C+++F  LK +L+   +L  PD S  F I +DASK+  G VL Q
Sbjct: 576 RLCKKNVP-FEWTD-ECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQ 635

[Close]

BLAST of Pay0003885 vs. ExPASy TrEMBL
Match: A0A5A7TW75 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1202G00130 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 166/192 (86.46%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWL 60
           MDLMN+VFREFLDTFVIVFIDDILIYSKTEA HEKHLRMVLQTLRDNKLYAKFSKCEFWL
Sbjct: 248 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEKHLRMVLQTLRDNKLYAKFSKCEFWL 307

Query: 61  KQVSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATP 120
           KQVSFLGHVVSKAGVSVDPAKIEA++               GLAGYYRRFVENFS IATP
Sbjct: 308 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 367

Query: 121 LTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 178
           LTQL+RKGAP FVWSKA CE SFQ LKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVL
Sbjct: 368 LTQLTRKGAP-FVWSKA-CEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 427

[Close]

BLAST of Pay0003885 vs. ExPASy TrEMBL
Match: Q84KB0 (Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 166/192 (86.46%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWL 60
           MDLMN+VFREFLDTFVIVFIDDILIYSKTEA HE+HLRMVLQTLRDNKLYAKFSKCEFWL
Sbjct: 127 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 186

Query: 61  KQVSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATP 120
           KQVSFLGHVVSKAGVSVDPAKIEA++               GLAGYYRRFVENFS IATP
Sbjct: 187 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 246

Query: 121 LTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 178
           LTQL+RKGAP FVWSKA CE SFQ LKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL
Sbjct: 247 LTQLTRKGAP-FVWSKA-CEDSFQTLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 306

[Close]

BLAST of Pay0003885 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.2e-82
Identity = 165/192 (85.94%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWL 60
           MDLMN+VFREFLDTFVIVFIDDILIYSKTEA HE+HLRMVLQTLRDNKLYAKFSKCEFWL
Sbjct: 706 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 765

Query: 61  KQVSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATP 120
           KQVSFLGHVVSKAGVSVDPAKIEA++               GLAGYYRRFVENFS IATP
Sbjct: 766 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 825

Query: 121 LTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 178
           LTQL+RKGAP FVWSKA CE SFQ LKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVL
Sbjct: 826 LTQLTRKGAP-FVWSKA-CEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 885

[Close]

BLAST of Pay0003885 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.5e-82
Identity = 165/192 (85.94%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1    MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWL 60
            MDLMN+VFREFLDTFVIVFIDDILIYSKTEA HE+HLRMVLQTLRDNKLYAKFSKCEFWL
Sbjct: 960  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 1019

Query: 61   KQVSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATP 120
            KQVSFLGHVVSKAGVSVDPAKIEA++               GLAGYYRRFVENFS IATP
Sbjct: 1020 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 1079

Query: 121  LTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 178
            LTQL+RKGAP FVWSKA CE SFQ LKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVL
Sbjct: 1080 LTQLTRKGAP-FVWSKA-CEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 1139

[Close]

BLAST of Pay0003885 vs. ExPASy TrEMBL
Match: A0A5A7UM36 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00280 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.5e-82
Identity = 163/192 (84.90%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWL 60
           MDLMN+VFREFLDTFVIVFIDDILIYSK EA HE+HLRMVLQTLRDNKLYAKFSKCEFWL
Sbjct: 644 MDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 703

Query: 61  KQVSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATP 120
           KQVSFLGHVVSKAGVSVDPAKIEA++               GLAGYYRRFVENFSCIATP
Sbjct: 704 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSCIATP 763

Query: 121 LTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 178
           LTQL+RKGAP +VWSKA CE SFQ LKQKLVT PVLTVPDGSG+FVIYSDASKKGLGCVL
Sbjct: 764 LTQLTRKGAP-YVWSKA-CEDSFQNLKQKLVTVPVLTVPDGSGSFVIYSDASKKGLGCVL 823

[Close]

BLAST of Pay0003885 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 315.5 bits (807), Expect = 3.0e-82
Identity = 166/192 (86.46%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWL 60
           MDLMN+VFREFLDTFVIVFIDDILIYSKTEA HE+HLRMVLQTLRDNKLYAKFSKCEFWL
Sbjct: 127 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 186

Query: 61  KQVSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATP 120
           KQVSFLGHVVSKAGVSVDPAKIEA++               GLAGYYRRFVENFS IATP
Sbjct: 187 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 246

Query: 121 LTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 178
           LTQL+RKGAP FVWSKA CE SFQ LKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL
Sbjct: 247 LTQLTRKGAP-FVWSKA-CEDSFQTLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 306

[Close]

BLAST of Pay0003885 vs. NCBI nr
Match: KAA0045479.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 3.0e-82
Identity = 166/192 (86.46%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWL 60
           MDLMN+VFREFLDTFVIVFIDDILIYSKTEA HEKHLRMVLQTLRDNKLYAKFSKCEFWL
Sbjct: 248 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEKHLRMVLQTLRDNKLYAKFSKCEFWL 307

Query: 61  KQVSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATP 120
           KQVSFLGHVVSKAGVSVDPAKIEA++               GLAGYYRRFVENFS IATP
Sbjct: 308 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 367

Query: 121 LTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 178
           LTQL+RKGAP FVWSKA CE SFQ LKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVL
Sbjct: 368 LTQLTRKGAP-FVWSKA-CEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 427

[Close]

BLAST of Pay0003885 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 8.7e-82
Identity = 165/192 (85.94%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWL 60
           MDLMN+VFREFLDTFVIVFIDDILIYSKTEA HE+HLRMVLQTLRDNKLYAKFSKCEFWL
Sbjct: 706 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 765

Query: 61  KQVSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATP 120
           KQVSFLGHVVSKAGVSVDPAKIEA++               GLAGYYRRFVENFS IATP
Sbjct: 766 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 825

Query: 121 LTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 178
           LTQL+RKGAP FVWSKA CE SFQ LKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVL
Sbjct: 826 LTQLTRKGAP-FVWSKA-CEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 885

[Close]

BLAST of Pay0003885 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 165/192 (85.94%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1    MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWL 60
            MDLMN+VFREFLDTFVIVFIDDILIYSKTEA HE+HLRMVLQTLRDNKLYAKFSKCEFWL
Sbjct: 960  MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 1019

Query: 61   KQVSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATP 120
            KQVSFLGHVVSKAGVSVDPAKIEA++               GLAGYYRRFVENFS IATP
Sbjct: 1020 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 1079

Query: 121  LTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 178
            LTQL+RKGAP FVWSKA CE SFQ LKQKLVTAPVLTVPDGSG+FVIYSDASKKGLGCVL
Sbjct: 1080 LTQLTRKGAP-FVWSKA-CEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 1139

[Close]

BLAST of Pay0003885 vs. NCBI nr
Match: KAA0056200.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 163/192 (84.90%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MDLMNKVFREFLDTFVIVFIDDILIYSKTEARHEKHLRMVLQTLRDNKLYAKFSKCEFWL 60
           MDLMN+VFREFLDTFVIVFIDDILIYSK EA HE+HLRMVLQTLRDNKLYAKFSKCEFWL
Sbjct: 644 MDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 703

Query: 61  KQVSFLGHVVSKAGVSVDPAKIEALS---------------GLAGYYRRFVENFSCIATP 120
           KQVSFLGHVVSKAGVSVDPAKIEA++               GLAGYYRRFVENFSCIATP
Sbjct: 704 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSCIATP 763

Query: 121 LTQLSRKGAPFFVWSKASCERSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVL 178
           LTQL+RKGAP +VWSKA CE SFQ LKQKLVT PVLTVPDGSG+FVIYSDASKKGLGCVL
Sbjct: 764 LTQLTRKGAP-YVWSKA-CEDSFQNLKQKLVTVPVLTVPDGSGSFVIYSDASKKGLGCVL 823

[Close]

BLAST of Pay0003885 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-18
Identity = 51/127 (40.16%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 36  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAL-------- 95
           HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+        
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 96  -------SGLAGYYRRFVENFSCIATPLTQLSRKGAPFFVWSKASCERSFQELKQKLVTA 146
                   GL GYYRRFV+N+  I  PLT+L +K +    W++ +   +F+ LK  + T 
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS--LKWTEMAA-LAFKALKGAVTTL 122

The following BLAST results are available for this feature:

BLAST of Pay0003885 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.1e-26	33.33	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	7.0e-26	33.86	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P10401	1.2e-20	31.66	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q8I7P9	3.4e-20	29.56	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10394	1.4e-18	30.41	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]

BLAST of Pay0003885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TW75	1.4e-82	86.46	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1202G00130 P...	[more]
Q84KB0	1.4e-82	86.46	Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7U330	4.2e-82	85.94	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5D3BPI1	5.5e-82	85.94	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7UM36	5.5e-82	84.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]

BLAST of Pay0003885 vs. NCBI nr


Match Name	E-value	Identity	Description
AAO45752.1	3.0e-82	86.46	pol protein [Cucumis melo subsp. melo]	[more]
KAA0045479.1	3.0e-82	86.46	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	8.7e-82	85.94	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	1.1e-81	85.94	pol protein [Cucumis melo var. makuwa]	[more]
KAA0056200.1	1.1e-81	84.90	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0003885 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.2e-18	40.16	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..69 e-value: 2.7E-12 score: 46.7
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..70 score: 9.2241
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 122..177 e-value: 5.5E-15 score: 55.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 73..159 e-value: 1.6E-18 score: 68.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..72 e-value: 5.7E-28 score: 99.4
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 10..150
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 10..150
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..70 e-value: 1.26784E-30 score: 107.681
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0003885.1	Pay0003885.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding