PI0028041 (gene) Melon (PI 482460) v1

Overview
NamePI0028041
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionCox19-like CHCH family protein
Locationchr09: 1536471 .. 1538330 (-)
RNA-Seq ExpressionPI0028041
SyntenyPI0028041
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCCCCCTTTTCCCACTTGTCCTCTCTTCATTCTCCATTCCTTTGTAAAAACAAGCTGCAGCAGCACACCGGTTTTTGAAATCCACTTCCATTTCCGCCATGGATGAACCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCCTTCGATCAAGAGAAATGCTACAGTCTCCTTCATTCTTTGCGTGAATGCGTGCTCAGCAAGGTAATTCAGTTATTCCTTCTCTTCAATTTGCCCTAACCCTTCATCATTTGTTTACATGGTCATTTGTTATTAATTAGTACTGTTTTTTGGAATTTTCGAATTAGGTCATCTACCTCTCTGAATCGAAGTTCGATTGTCATTCTTCGAATTGTGATAATTAATTAGTCGTTTTACTTTAGGATTAGTGAAATGGAAATAGATTCAGGTGGATTTTGGTTTATTGCTTATTAAGATATTCATCAAACATGTGGGGGGATCTTGATTTTAATTTCTGTTTCTGATGTTATTTTCTTTGATTTGTTACTTCAATAGAAAGTGAAGAAATTCTCTCTGGCTGAAGAAGAACAAACAAAACCAATAATCAAGAAGAATGCTTGAAGGAAGCAATTTTGTAAGACTGATTTTGTTCATTTTAAAGTAGGGTCTTGTGCTACTTTACTTGAAATTTTTTTATTTCTTGGAGAGATTGAACTTTGCTGAAAACTGTCAAAATGATTTAGAATTGAAGTCCATCAAAGTGGTGACCATTGAATTCCCCAATAAATTCTGTTTCTGGAATCTGAAAGATTG

mRNA sequence

TTTTCCCCCTTTTCCCACTTGTCCTCTCTTCATTCTCCATTCCTTTGTAAAAACAAGCTGCAGCAGCACACCGGTTTTTGAAATCCACTTCCATTTCCGCCATGGATGAACCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCCTTCGATCAAGAGAAATGCTACAGTCTCCTTCATTCTTTGCGTGAATGCGTGCTCAGCAAGAAAGTGAAGAAATTCTCTCTGGCTGAAGAAGAACAAACAAAACCAATAATCAAGAAGAATGCTTGAAGGAAGCAATTTTGTAAGACTGATTTTGTTCATTTTAAAGTAGGGTCTTGTGCTACTTTACTTGAAATTTTTTTATTTCTTGGAGAGATTGAACTTTGCTGAAAACTGTCAAAATGATTTAGAATTGAAGTCCATCAAAGTGGTGACCATTGAATTCCCCAATAAATTCTGTTTCTGGAATCTGAAAGATTG

Coding sequence (CDS)

ATGGATGAACCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCCTTCGATCAAGAGAAATGCTACAGTCTCCTTCATTCTTTGCGTGAATGCGTGCTCAGCAAGAAAGTGAAGAAATTCTCTCTGGCTGAAGAAGAACAAACAAAACCAATAATCAAGAAGAATGCTTGA

Protein sequence

MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEEQTKPIIKKNA
Homology
BLAST of PI0028041 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.5e-28
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQEKCY LLHSLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 67
          IIKKNA
Sbjct: 61 IIKKNA 66

BLAST of PI0028041 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQ+KCY LLHSLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 67
          I+KKN+
Sbjct: 61 IVKKNS 66

BLAST of PI0028041 vs. ExPASy TrEMBL
Match: A0A5J4ZSA8 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_011592 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-17
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 1  MDEPQ-PQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEE--Q 60
          MD+ Q PQPVCAQEALNLLNCVTESPFDQ+KC  LLHSLR+CV SKKVKKFSLAE++  +
Sbjct: 1  MDQGQPPQPVCAQEALNLLNCVTESPFDQDKCLRLLHSLRDCVQSKKVKKFSLAEQKGGE 60

Query: 61 TKPIIKKN 66
            PI KK+
Sbjct: 61 ADPISKKH 68

BLAST of PI0028041 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.4e-16
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEE 57
          MDE + +PVCAQEAL+LLNCVT+SPFDQEKC  LL+SLRECVL+KKVKKFSLA++E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

BLAST of PI0028041 vs. ExPASy TrEMBL
Match: A0A061GD02 (Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEEQ--T 60
          M+E   QPVCAQEAL LLNCVT+SPFDQEKC  LLHSLR+CVL KKVKKFSL  ++Q  T
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQQDT 60

Query: 61 KPIIKKN 66
            + KKN
Sbjct: 61 DSVSKKN 67

BLAST of PI0028041 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQEKCY LLHSLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 67
          IIKKNA
Sbjct: 61 IIKKNA 66

BLAST of PI0028041 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQ+KCY LLHSLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 67
          I+KKN+
Sbjct: 61 IVKKNS 66

BLAST of PI0028041 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          MD+ Q QPVCAQEAL+LLNCVT+SPFDQEKCY LLHSLRECVLSKKVKKFSLA+EE+ K 
Sbjct: 1  MDDAQAQPVCAQEALDLLNCVTDSPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKR 60

Query: 61 IIKKN 66
            KK+
Sbjct: 61 SGKKS 65

BLAST of PI0028041 vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 3.7e-17
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          M EP+ QPVCAQEAL+LLNCVTESPFDQ+KCY LLHSLRECV+S   KKFSLA+EEQTK 
Sbjct: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTKQ 72

Query: 61 IIKKNA 67
          +  KNA
Sbjct: 73 M--KNA 73

BLAST of PI0028041 vs. NCBI nr
Match: KAA8520919.1 (hypothetical protein F0562_011592 [Nyssa sinensis])

HSP 1 Score: 96.7 bits (239), Expect = 8.1e-17
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 1  MDEPQ-PQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEE--Q 60
          MD+ Q PQPVCAQEALNLLNCVTESPFDQ+KC  LLHSLR+CV SKKVKKFSLAE++  +
Sbjct: 1  MDQGQPPQPVCAQEALNLLNCVTESPFDQDKCLRLLHSLRDCVQSKKVKKFSLAEQKGGE 60

Query: 61 TKPIIKKN 66
            PI KK+
Sbjct: 61 ADPISKKH 68

BLAST of PI0028041 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein )

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-16
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYSLLHSLRECVLSKKVKKFSLAEEE 57
           M++   QP+C QEAL LLNCV ESPFDQEKC   L SLRECVLSKKVKKFS+  ++
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQD 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQS76.5e-2898.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1[more]
A0A5D3C4E24.2e-2793.94Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5J4ZSA83.9e-1775.00Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_011592 PE=4 SV=1[more]
A0A7J7CJI74.4e-1678.57Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 ... [more]
A0A061GD022.2e-1570.15Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
KGN50036.11.3e-2798.48hypothetical protein Csa_000619 [Cucumis sativus][more]
KAA0042698.18.7e-2793.94Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like... [more]
KAG6606053.12.3e-1980.00hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7017003.13.7e-1777.27hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA8520919.18.1e-1775.00hypothetical protein F0562_011592 [Nyssa sinensis][more]
Match NameE-valueIdentityDescription
AT4G23760.11.5e-1667.86Cox19-like CHCH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1130CytochromE C oxidase copper chaperonecoord: 5..65
e-value: 5.8E-6
score: 28.2
NoneNo IPR availablePANTHERPTHR37750COX19-LIKE CHCH FAMILY PROTEINcoord: 1..59
NoneNo IPR availablePROSITEPS51808CHCHcoord: 7..49
score: 10.769886
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 7..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0028041.2PI0028041.2mRNA