PI0027887 (gene) Melon (PI 482460) v1

Overview
NamePI0027887
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr07: 13865649 .. 13865879 (+)
RNA-Seq ExpressionPI0027887
SyntenyPI0027887
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGCTCGCATCTGAAATCGCAAGCCTTAAGGAGTGACAAGGCGATGGTGGGTTTGATCAAGAAGGCTTCTTTGCGGTCTGACAGGCAGTACAAGTCAATGATGAACTACATCCACACGACCATCACAAGCCTCGTGCCTAAGCCTGTCATTCCGCCTGAATTCGAAGATCCCCTTTCTGACAATGAAGTGGACGCCGCGACAGGACCTTCCGAAACGCGGCTATAA

mRNA sequence

ATGATCAGCTCGCATCTGAAATCGCAAGCCTTAAGGAGTGACAAGGCGATGGTGGGTTTGATCAAGAAGGCTTCTTTGCGGTCTGACAGGCAGTACAAGTCAATGATGAACTACATCCACACGACCATCACAAGCCTCGTGCCTAAGCCTGTCATTCCGCCTGAATTCGAAGATCCCCTTTCTGACAATGAAGTGGACGCCGCGACAGGACCTTCCGAAACGCGGCTATAA

Coding sequence (CDS)

ATGATCAGCTCGCATCTGAAATCGCAAGCCTTAAGGAGTGACAAGGCGATGGTGGGTTTGATCAAGAAGGCTTCTTTGCGGTCTGACAGGCAGTACAAGTCAATGATGAACTACATCCACACGACCATCACAAGCCTCGTGCCTAAGCCTGTCATTCCGCCTGAATTCGAAGATCCCCTTTCTGACAATGAAGTGGACGCCGCGACAGGACCTTCCGAAACGCGGCTATAA

Protein sequence

MISSHLKSQALRSDKAMVGLIKKASLRSDRQYKSMMNYIHTTITSLVPKPVIPPEFEDPLSDNEVDAATGPSETRL
Homology
[Close]
BLAST of PI0027887 vs. ExPASy TrEMBL
Match: A0A5A7VKU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00210 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.7e-06
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 15  KAMVGLIKKASLRSDRQYKSMMNYIHTTITSLVPKPVIPPEFEDPLSDNEVD--AATGPS 74
           + M   IK+ASL ++ Q +++MNYIH TI SLVP P+ PPE E+PL++ E    AA  PS
Sbjct: 151 QTMKTFIKQASLWTEMQCRTLMNYIHVTIVSLVPTPIFPPELEEPLTEVEPGPCAAVEPS 210

Query: 75  ETR 76
           E R
Sbjct: 211 EPR 213

[Close]
BLAST of PI0027887 vs. NCBI nr
Match: KAA0067817.1 (hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 9.7e-06
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 15  KAMVGLIKKASLRSDRQYKSMMNYIHTTITSLVPKPVIPPEFEDPLSDNEVD--AATGPS 74
           + M   IK+ASL ++ Q +++MNYIH TI SLVP P+ PPE E+PL++ E    AA  PS
Sbjct: 151 QTMKTFIKQASLWTEMQCRTLMNYIHVTIVSLVPTPIFPPELEEPLTEVEPGPCAAVEPS 210

Query: 75  ETR 76
           E R
Sbjct: 211 EPR 213

The following BLAST results are available for this feature:
BLAST of PI0027887 vs.
Match NameE-valueIdentityDescription
BLAST of PI0027887 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VKU14.7e-0650.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of PI0027887 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067817.19.7e-0650.79hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa][more]
BLAST of PI0027887 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0027887.1PI0027887.1mRNA