PI0026627 (gene) Melon (PI 482460) v1

Overview


Name	PI0026627
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr12: 16243299 .. 16243808 (+)
RNA-Seq Expression	PI0026627
Synteny	PI0026627

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACCATGTTTTCAATTGCACTACCGTTTCCGAACATGGTGCATTTGTACGTGACTGTGAGTAGGGTAGATTTGGGCATCGATTTAAATGTAGAATCACGACCAGTTGAAGAATATGTTGATGTTGATCCTGAATCAGATGCACAACCAGTGTGCATTGAAGAAGAAATTGTAGCTAATAATGACTATAGAGATTTTAGAACAGAAACTGATGATGAATTCGAAGAGATGGAATTTGATGGGCGTGAACATGAATTTCCCTCAAATACATTCACTGAGTTGGACATGAATGCAGTAGATAGCGTTCGTGAGCACGATCCAATTATAGTCCCAGTGGTGACTGACAACACGGAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAACACTACAACATATGGTCAAGTGTTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTCGAGTCAACGTCGACAAAGTGGGTCATTCGATGTAAGAAGTCAGATGAAGGTTGCAGATAG

mRNA sequence

ATGAACACCATGTTTTCAATTGCACTACCGTTTCCGAACATGGTGCATTTGTACGTGACTGTGAGTAGGGTAGATTTGGGCATCGATTTAAATGTAGAATCACGACCAGTTGAAGAATATGTTGATGTTGATCCTGAATCAGATGCACAACCAGTGTGCATTGAAGAAGAAATTGTAGCTAATAATGACTATAGAGATTTTAGAACAGAAACTGATGATGAATTCGAAGAGATGGAATTTGATGGGCGTGAACATGAATTTCCCTCAAATACATTCACTGAGTTGGACATGAATGCAGTAGATAGCGTTCGTGAGCACGATCCAATTATAGTCCCAGTGGTGACTGACAACACGGAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAACACTACAACATATGGTCAAGTGTTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTCGAGTCAACGTCGACAAAGTGGGTCATTCGATGTAAGAAGTCAGATGAAGGTTGCAGATAG

Coding sequence (CDS)

ATGAACACCATGTTTTCAATTGCACTACCGTTTCCGAACATGGTGCATTTGTACGTGACTGTGAGTAGGGTAGATTTGGGCATCGATTTAAATGTAGAATCACGACCAGTTGAAGAATATGTTGATGTTGATCCTGAATCAGATGCACAACCAGTGTGCATTGAAGAAGAAATTGTAGCTAATAATGACTATAGAGATTTTAGAACAGAAACTGATGATGAATTCGAAGAGATGGAATTTGATGGGCGTGAACATGAATTTCCCTCAAATACATTCACTGAGTTGGACATGAATGCAGTAGATAGCGTTCGTGAGCACGATCCAATTATAGTCCCAGTGGTGACTGACAACACGGAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAACACTACAACATATGGTCAAGTGTTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTCGAGTCAACGTCGACAAAGTGGGTCATTCGATGTAAGAAGTCAGATGAAGGTTGCAGATAG

Protein sequence

MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVANNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTELYKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDEGCR

Homology

[Close]

BLAST of PI0026627 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 138/169 (81.66%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVA 60
           MNTMFSIALPFPNMVHLYVTVS VD  I+LNVE R VEEYVDV+PESDA PVC EEE+VA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEFEEM+FDG E+E PSNTFT+LDMNAVD+++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDEGCR 170
           Y GMICE+KE +QHMVKCFAIKSHAPYEVVEST TKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0026627 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.5e-73
Identity = 138/169 (81.66%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVA 60
           MNTMFSIALPFPNMVHLYVTVS VD  I+LNVE R VEEYVDV+PESDA PVC EEE+VA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEFEEM+FDG E+E PSNTFT+LDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVEST TKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0026627 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.4e-71
Identity = 136/169 (80.47%), Postives = 152/169 (89.94%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVA 60
           MNTMFSIAL FPNMVHLYVTVS VD  I+LNVE R VEEYVDV+PESDA  VC EEE+VA
Sbjct: 43  MNTMFSIALSFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPLVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEFEEM+FDG E+E PSNTFT+LDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVEST TKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0026627 vs. ExPASy TrEMBL
Match: A0A5D3DIM2 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00560 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.3e-71
Identity = 134/169 (79.29%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVA 60
           MNTMFSI LPF NMVHLYVTVS VD  I+LNVE R VEEYVDV+PES+A PVC EEE+VA
Sbjct: 43  MNTMFSITLPFLNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESNAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEFEEM+FDG E+E PSN FT+LDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNKFTDLDMNAVDGIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDEGCR 170
           Y GMICE+KE LQHM+KCFAIKSHAPYEVVEST TKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0026627 vs. ExPASy TrEMBL
Match: A0A5D3DHR2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001060 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.9e-69
Identity = 134/166 (80.72%), Postives = 149/166 (89.76%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVA 60
           MNTMFSIALPFPNMVHLYVTVS VDL I+LNVE + VEEYVDVD ESDA PVC EEE+VA
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAINLNVEPKYVEEYVDVDQESDAPPVCHEEEMVA 60

Query: 61  NNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEFEEM+FDG E+E PSNTFT+LDMNAVD ++E DPIIVP+VTDNT+L
Sbjct: 61  TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEQDPIIVPMVTDNTKL 120

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDE 167
           Y  MICE+KE LQHMVKCFAIKSHAPYEVVEST TKWVI+CKKS+E
Sbjct: 121 YTRMICENKEMLQHMVKCFAIKSHAPYEVVESTLTKWVIQCKKSNE 166

[Close]

BLAST of PI0026627 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.4e-73
Identity = 138/169 (81.66%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVA 60
           MNTMFSIALPFPNMVHLYVTVS VD  I+LNVE R VEEYVDV+PESDA PVC EEE+VA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEFEEM+FDG E+E PSNTFT+LDMNAVD+++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDEGCR 170
           Y GMICE+KE +QHMVKCFAIKSHAPYEVVEST TKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0026627 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.9 bits (725), Expect = 9.2e-73
Identity = 138/169 (81.66%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVA 60
           MNTMFSIALPFPNMVHLYVTVS VD  I+LNVE R VEEYVDV+PESDA PVC EEE+VA
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEFEEM+FDG E+E PSNTFT+LDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVEST TKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0026627 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 136/169 (80.47%), Postives = 152/169 (89.94%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVA 60
           MNTMFSIAL FPNMVHLYVTVS VD  I+LNVE R VEEYVDV+PESDA  VC EEE+VA
Sbjct: 43  MNTMFSIALSFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPLVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEFEEM+FDG E+E PSNTFT+LDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDEGCR 170
           Y GMICE+K+ LQHMVKCFAIKSHAPYEVVEST TKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0026627 vs. NCBI nr
Match: KAA0040476.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK23484.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 134/169 (79.29%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVA 60
           MNTMFSI LPF NMVHLYVTVS VD  I+LNVE R VEEYVDV+PES+A PVC EEE+VA
Sbjct: 43  MNTMFSITLPFLNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESNAPPVCHEEEMVA 102

Query: 61  NNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEFEEM+FDG E+E PSN FT+LDMNAVD ++EHDPIIVP+VTDNT+L
Sbjct: 103 TNEYTEFRTETDDEFEEMDFDGCEYEVPSNKFTDLDMNAVDGIQEHDPIIVPMVTDNTKL 162

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDEGCR 170
           Y GMICE+KE LQHM+KCFAIKSHAPYEVVEST TKWVIRCKKS+EGC+
Sbjct: 163 YTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCK 211

[Close]

BLAST of PI0026627 vs. NCBI nr
Match: TYK23115.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 8.1e-69
Identity = 134/166 (80.72%), Postives = 149/166 (89.76%), Query Frame = 0


Query: 1   MNTMFSIALPFPNMVHLYVTVSRVDLGIDLNVESRPVEEYVDVDPESDAQPVCIEEEIVA 60
           MNTMFSIALPFPNMVHLYVTVS VDL I+LNVE + VEEYVDVD ESDA PVC EEE+VA
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAINLNVEPKYVEEYVDVDQESDAPPVCHEEEMVA 60

Query: 61  NNDYRDFRTETDDEFEEMEFDGREHEFPSNTFTELDMNAVDSVREHDPIIVPVVTDNTEL 120
            N+Y +FRTETDDEFEEM+FDG E+E PSNTFT+LDMNAVD ++E DPIIVP+VTDNT+L
Sbjct: 61  TNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEQDPIIVPMVTDNTKL 120

Query: 121 YKGMICEDKETLQHMVKCFAIKSHAPYEVVESTSTKWVIRCKKSDE 167
           Y  MICE+KE LQHMVKCFAIKSHAPYEVVEST TKWVI+CKKS+E
Sbjct: 121 YTRMICENKEMLQHMVKCFAIKSHAPYEVVESTLTKWVIQCKKSNE 166

The following BLAST results are available for this feature:

BLAST of PI0026627 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026627 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SS31	1.2e-73	81.66	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BAB0	4.5e-73	81.66	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7T1X8	5.4e-71	80.47	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3DIM2	9.3e-71	79.29	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3DHR2	3.9e-69	80.72	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of PI0026627 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034014.1	2.4e-73	81.66	uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]	[more]
TYJ95836.1	9.2e-73	81.66	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0036768.1	1.1e-70	80.47	uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]	[more]
KAA0040476.1	1.9e-70	79.29	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK23115.1	8.1e-69	80.72	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of PI0026627 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 119..168 e-value: 1.2E-5 score: 25.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026627.1	PI0026627.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding