Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTCTTCACGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTATTTGGTGGAATTGGTTTCATCTGGCGGGTGGAGGTTAGATAATGGGACATTTCAACCTGGATATTTAGCACAGTTGCAACGGATGATGGCGGAGAAGTTGCCCGGCACTAACATCCAAGGATCACCGACTATTGATTGTCGTGTGAAATCCCTCAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGACCATCTTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGGAACGCGACTTGTTTGATAATTGGGTCAAGTTACAGTTTATTTAACGCGAATTTTACATAATTTAGAAATCACAACCATCTACTAATGTGTTTGTTTCATGTATGTACAGAGTCATCCTGGGGCGAAAGGACTGTTACACAAATCATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCGGGCAACAAGAGCACGTGCGGAGACTTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAACGACAGTGTTACACTTGATGATCTACATGACGAAGACATCCTGACGATGTATAGCCAAAGGGTGGATATGTCCCCAGATGACATGGTAGGAACACGTGCAGGTCGGTCAAGTGATGGACGGAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAGTGAAACAATGGAGGTGATCAGGAATGCAATGGACTTTGCAAATGATCAATTGAGGGCAATTGCGGATTGGCCAAAGGAGAAGCGTGCAACGGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGTCGAGATAGGGTAAAGCTTCTGCGAATATTATTCCGTAGTGTTGATGACACACAGGGATTCCTGTCGGTCCCATCGGAACTGAAATTGGAGTACTGCAGTATTTTGTTGGAAGAAAATGTTTGA
mRNA sequence
ATGGCAAGTTCTTCACGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTATTTGGTGGAATTGGTTTCATCTGGCGGGTGGAGGTTAGATAATGGGACATTTCAACCTGGATATTTAGCACAGTTGCAACGGATGATGGCGGAGAAGTTGCCCGGCACTAACATCCAAGGATCACCGACTATTGATTGTCGTGTGAAATCCCTCAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGACCATCTTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGGAACGCGACTTGTTTGATAATTGGAGTCATCCTGGGGCGAAAGGACTGTTACACAAATCATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCGGGCAACAAGAGCACGTGCGGAGACTTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAACGACAGTGTTACACTTGATGATCTACATGACGAAGACATCCTGACGATGTATAGCCAAAGGGTGGATATGTCCCCAGATGACATGGTAGGAACACGTGCAGGTCGGTCAAGTGATGGACGGAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAGTGAAACAATGGAGGTGATCAGGAATGCAATGGACTTTGCAAATGATCAATTGAGGGCAATTGCGGATTGGCCAAAGGAGAAGCGTGCAACGGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGTCGAGATAGGGTAAAGCTTCTGCGAATATTATTCCGTAGTGTTGATGACACACAGGGATTCCTGTCGGTCCCATCGGAACTGAAATTGGAGTACTGCAGTATTTTGTTGGAAGAAAATGTTTGA
Coding sequence (CDS)
ATGGCAAGTTCTTCACGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTATTTGGTGGAATTGGTTTCATCTGGCGGGTGGAGGTTAGATAATGGGACATTTCAACCTGGATATTTAGCACAGTTGCAACGGATGATGGCGGAGAAGTTGCCCGGCACTAACATCCAAGGATCACCGACTATTGATTGTCGTGTGAAATCCCTCAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGACCATCTTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGGAACGCGACTTGTTTGATAATTGGAGTCATCCTGGGGCGAAAGGACTGTTACACAAATCATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCGGGCAACAAGAGCACGTGCGGAGACTTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAACGACAGTGTTACACTTGATGATCTACATGACGAAGACATCCTGACGATGTATAGCCAAAGGGTGGATATGTCCCCAGATGACATGGTAGGAACACGTGCAGGTCGGTCAAGTGATGGACGGAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAGTGAAACAATGGAGGTGATCAGGAATGCAATGGACTTTGCAAATGATCAATTGAGGGCAATTGCGGATTGGCCAAAGGAGAAGCGTGCAACGGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGTCGAGATAGGGTAAAGCTTCTGCGAATATTATTCCGTAGTGTTGATGACACACAGGGATTCCTGTCGGTCCCATCGGAACTGAAATTGGAGTACTGCAGTATTTTGTTGGAAGAAAATGTTTGA
Protein sequence
MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTNIQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNWSHPGAKGLLHKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQRVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWPKEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSILLEENV
Homology
BLAST of PI0025703 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 485.0 bits (1247), Expect = 2.4e-133
Identity = 238/306 (77.78%), Postives = 268/306 (87.58%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTN 60
MAS SRAPKHTWTKEEE K VE LVELVSSGGWR DNGTFQPGYLAQLQRMMAEKLPGTN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNW--SHPGAKG 120
IQ S TIDC VKSLKKTY AIAEMRGPSCSGFGWNEE+QCIIAERDLFD+W SHP AKG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLHKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQ 180
LLHKSFPYYDDLSYVFG+DRAT AR+ETF +VGSNV N FND++ L D HDEDI TMYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 RVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWP 240
V MSPD+M G RAG++S+ RNCSS SKRKRG + ET+EVIR+ M+F N+QL+AIADWP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 KEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSI 300
KEKRA EVE+RA+VVKQL DIP+LRS+DR KL++ILFRS++ +GFLS+P+ELKLEYC+I
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300
Query: 301 LLEENV 305
LL+ V
Sbjct: 301 LLQNIV 306
BLAST of PI0025703 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 485.0 bits (1247), Expect = 2.4e-133
Identity = 238/306 (77.78%), Postives = 268/306 (87.58%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTN 60
MAS SRAPKHTWTKEEE K VE LVELVSSGGWR DNGTFQPGYLAQLQRMMAEKLPGTN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNW--SHPGAKG 120
IQ S TIDC VKSLKKTY AIAEMRGPSCSGFGWNEE+QCIIAERDLFD+W SHP AKG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLHKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQ 180
LLHKSFPYYDDLSYVFG+DRAT AR+ETF +VGSNV N FND++ L D HDEDI TMYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 RVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWP 240
V MSPD+M G RAG++S+ RNCSS SKRKRG + ET+EVIR+ M+F N+QL+AIADWP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 KEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSI 300
KEKRA EVE+RA+VVKQL DIP+LRS+DR KL++ILFRS++ +GFLS+P+ELKLEYC+I
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300
Query: 301 LLEENV 305
LL+ V
Sbjct: 301 LLQNIV 306
BLAST of PI0025703 vs. ExPASy TrEMBL
Match:
A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)
HSP 1 Score: 374.8 bits (961), Expect = 3.5e-100
Identity = 197/304 (64.80%), Postives = 223/304 (73.36%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTN 60
MASSSRA KH WTKEEEAKLVE LVELVS+GGWR DNGTF+ GYL QLQRMMAEKLP TN
Sbjct: 1 MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60
Query: 61 IQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNWSHPGAKGLL 120
IQGSPTIDCR SHP AKGLL
Sbjct: 61 IQGSPTIDCR-----------------------------------------SHPAAKGLL 120
Query: 121 HKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQRV 180
HKSFPYYDDLSYVFG D AT A +ETFAD GSNV N FND V L D H++DILT+YSQ V
Sbjct: 121 HKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGV 180
Query: 181 DMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWPKE 240
MS D++ G RAG++S+ RN SSGSKRKRG +H E +EVI +A +F NDQL+ I DWPKE
Sbjct: 181 HMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKE 240
Query: 241 KRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSILL 300
KRATEVELR EVVKQL DIP+LRS+DR KL++ILFRSV+ +GFLS+P++LKLEYC+ILL
Sbjct: 241 KRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILL 263
Query: 301 EENV 305
E NV
Sbjct: 301 ENNV 263
BLAST of PI0025703 vs. ExPASy TrEMBL
Match:
A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)
HSP 1 Score: 370.2 bits (949), Expect = 8.5e-99
Identity = 177/303 (58.42%), Postives = 233/303 (76.90%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTN 60
M SSSR PKHTWTKEEEA LVE LVELV++GGWR DNGTF+PGYL QL RMMA K+PG+N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 61 IQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNWSHPGAKGLL 120
I S TID R+K +K+ + A+AEMRGP+CSGFGWN+E +CI+AE+++FD+WSHP AKGLL
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLL 120
Query: 121 HKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQRV 180
+KSF +YD+LSYVFG+DRAT RAE+FAD+GSN P + D+V D + D D MYS +
Sbjct: 121 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY-DAVAADAMPDTDFPPMYSPGL 180
Query: 181 DMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWPKE 240
+MSPDD++ TR R S+ RN SSGSKRKR G +++ +++R A+++ N+QL IA+WP
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 241 KRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSILL 300
+R + R E+V+ L+ IPEL DR +L+RIL R+VDD + FL VP +K YCS++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300
Query: 301 EEN 304
+EN
Sbjct: 301 QEN 301
BLAST of PI0025703 vs. ExPASy TrEMBL
Match:
A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)
HSP 1 Score: 367.9 bits (943), Expect = 4.2e-98
Identity = 176/303 (58.09%), Postives = 232/303 (76.57%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTN 60
M SSSR PKHTWTKEEEA LVE LVELV++GGWR DNGTF+PGYL QL RMMA K+PG+N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 61 IQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNWSHPGAKGLL 120
I S TID R+K +K+ + A+AEMRGP+CSGFGWN+E +CI+AE+++FD+WSHP AKGLL
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLL 120
Query: 121 HKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQRV 180
+KSF +YD+LSYVFG+DRAT RAE+FAD+GSN P + D+ D + D D MYS +
Sbjct: 121 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY-DAEAADAMPDTDFPPMYSPGL 180
Query: 181 DMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWPKE 240
+MSPDD++ TR R S+ RN SSGSKRKR G +++ +++R A+++ N+QL IA+WP
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 241 KRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSILL 300
+R + R E+V+ L+ IPEL DR +L+RIL R+VDD + FL VP +K YCS++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300
Query: 301 EEN 304
+EN
Sbjct: 301 QEN 301
BLAST of PI0025703 vs. NCBI nr
Match:
XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 485.0 bits (1247), Expect = 4.9e-133
Identity = 238/306 (77.78%), Postives = 268/306 (87.58%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTN 60
MAS SRAPKHTWTKEEE K VE LVELVSSGGWR DNGTFQPGYLAQLQRMMAEKLPGTN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNW--SHPGAKG 120
IQ S TIDC VKSLKKTY AIAEMRGPSCSGFGWNEE+QCIIAERDLFD+W SHP AKG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLHKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQ 180
LLHKSFPYYDDLSYVFG+DRAT AR+ETF +VGSNV N FND++ L D HDEDI TMYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 RVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWP 240
V MSPD+M G RAG++S+ RNCSS SKRKRG + ET+EVIR+ M+F N+QL+AIADWP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 KEKRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSI 300
KEKRA EVE+RA+VVKQL DIP+LRS+DR KL++ILFRS++ +GFLS+P+ELKLEYC+I
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300
Query: 301 LLEENV 305
LL+ V
Sbjct: 301 LLQNIV 306
BLAST of PI0025703 vs. NCBI nr
Match:
KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 374.8 bits (961), Expect = 7.1e-100
Identity = 197/304 (64.80%), Postives = 223/304 (73.36%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTN 60
MASSSRA KH WTKEEEAKLVE LVELVS+GGWR DNGTF+ GYL QLQRMMAEKLP TN
Sbjct: 1 MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60
Query: 61 IQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNWSHPGAKGLL 120
IQGSPTIDCR SHP AKGLL
Sbjct: 61 IQGSPTIDCR-----------------------------------------SHPAAKGLL 120
Query: 121 HKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQRV 180
HKSFPYYDDLSYVFG D AT A +ETFAD GSNV N FND V L D H++DILT+YSQ V
Sbjct: 121 HKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGV 180
Query: 181 DMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWPKE 240
MS D++ G RAG++S+ RN SSGSKRKRG +H E +EVI +A +F NDQL+ I DWPKE
Sbjct: 181 HMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKE 240
Query: 241 KRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSILL 300
KRATEVELR EVVKQL DIP+LRS+DR KL++ILFRSV+ +GFLS+P++LKLEYC+ILL
Sbjct: 241 KRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILL 263
Query: 301 EENV 305
E NV
Sbjct: 301 ENNV 263
BLAST of PI0025703 vs. NCBI nr
Match:
KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 370.2 bits (949), Expect = 1.8e-98
Identity = 177/303 (58.42%), Postives = 233/303 (76.90%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTN 60
M SSSR PKHTWTKEEEA LVE LVELV++GGWR DNGTF+PGYL QL RMMA K+PG+N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 61 IQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNWSHPGAKGLL 120
I S TID R+K +K+ + A+AEMRGP+CSGFGWN+E +CI+AE+++FD+WSHP AKGLL
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLL 120
Query: 121 HKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQRV 180
+KSF +YD+LSYVFG+DRAT RAE+FAD+GSN P + D+V D + D D MYS +
Sbjct: 121 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY-DAVAADAMPDTDFPPMYSPGL 180
Query: 181 DMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWPKE 240
+MSPDD++ TR R S+ RN SSGSKRKR G +++ +++R A+++ N+QL IA+WP
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 241 KRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSILL 300
+R + R E+V+ L+ IPEL DR +L+RIL R+VDD + FL VP +K YCS++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300
Query: 301 EEN 304
+EN
Sbjct: 301 QEN 301
BLAST of PI0025703 vs. NCBI nr
Match:
KAA0057083.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 367.9 bits (943), Expect = 8.7e-98
Identity = 176/303 (58.09%), Postives = 232/303 (76.57%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTN 60
M SSSR PKHTWTKEEEA LVE LVELV++GGWR DNGTF+PGYL QL RMMA K+PG+N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 61 IQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNWSHPGAKGLL 120
I S TID R+K +K+ + A+AEMRGP+CSGFGWN+E +CI+AE+++FD+WSHP AKGLL
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLL 120
Query: 121 HKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQRV 180
+KSF +YD+LSYVFG+DRAT RAE+FAD+GSN P + D+ D + D D MYS +
Sbjct: 121 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY-DAEAADAMPDTDFPPMYSPGL 180
Query: 181 DMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWPKE 240
+MSPDD++ TR R S+ RN SSGSKRKR G +++ +++R A+++ N+QL IA+WP
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 241 KRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSILL 300
+R + R E+V+ L+ IPEL DR +L+RIL R+VDD + FL VP +K YCS++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300
Query: 301 EEN 304
+EN
Sbjct: 301 QEN 301
BLAST of PI0025703 vs. NCBI nr
Match:
KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 367.5 bits (942), Expect = 1.1e-97
Identity = 176/303 (58.09%), Postives = 232/303 (76.57%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVEYLVELVSSGGWRLDNGTFQPGYLAQLQRMMAEKLPGTN 60
M SSSR PKHTWTKEEEA LVE LVELV++GGWR DNGTF+PGYL QL RMMA K+PG+N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 61 IQGSPTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAERDLFDNWSHPGAKGLL 120
I S TID R+K +K+ + A+AEMRGP+CSGFGWN+E +CI+AE+++FD+WSHP AKGLL
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLL 120
Query: 121 HKSFPYYDDLSYVFGRDRATRARAETFADVGSNVPNSFNDSVTLDDLHDEDILTMYSQRV 180
+KSF +YD+LSYVFG+DRAT RAE+FAD+GSN P + D+ D + D D MYS +
Sbjct: 121 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY-DAGAADAMPDTDFPPMYSPGL 180
Query: 181 DMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQHSETMEVIRNAMDFANDQLRAIADWPKE 240
+MSPDD++ TR R S+ RN SSGSKRKR G +++ +++R A+++ N+QL IA+WP
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 241 KRATEVELRAEVVKQLDDIPELRSRDRVKLLRILFRSVDDTQGFLSVPSELKLEYCSILL 300
+R + R E+V+ L+ IPEL DR +L+RIL R+VDD + FL VP +K YCS++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300
Query: 301 EEN 304
+EN
Sbjct: 301 QEN 301
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U0H7 | 2.4e-133 | 77.78 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B4L3 | 2.4e-133 | 77.78 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
A0A5D3BZU3 | 3.5e-100 | 64.80 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DPR5 | 8.5e-99 | 58.42 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7UME4 | 4.2e-98 | 58.09 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
XP_008441954.1 | 4.9e-133 | 77.78 | PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... | [more] |
KAA0031678.1 | 7.1e-100 | 64.80 | retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... | [more] |
KAA0035621.1 | 1.8e-98 | 58.42 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon... | [more] |
KAA0057083.1 | 8.7e-98 | 58.09 | retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon p... | [more] |
KAA0038122.1 | 1.1e-97 | 58.09 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon... | [more] |
Match Name | E-value | Identity | Description | |