Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAAGTGGCACCCAAAAATACCCTTAGAGAGCTATATGAGTCGGAGGTCCATCAAAGGCCAATAGGTATAGTGATTCCACCTACCACAACCAACTTTCATCGTAGGTCGGATTTGATCTCAAATTTATCCATCTTTAGAGGGTCCAATGGAGAAGACCCACATAAACACCTTAGAGATATTTCATGGACATGTGATCTCCTTAGACCTTATGGGGTAACCGAGGAACAATTGAATCTTAGGGCATTTCCCTTTTCCCTCGCCGATAGTGCCAAAAGATTGCTTATAAACCTAGAGCCTCAAACCATAACCACTTAGGAACAACTTAAGAAGAGATTCTTAGAAAAATTCTTCCCAATTACTAGAGTTCAAACGGTTTTAAAAGAAATCTATAGTGCTAGGCAATCTCATAATGAAACATTATTTGAATATTGGGAGAGGTATAATGAACTATGTGCTAGGTTGCCTTACAATCAATTGAATGAAAGGGACATTGTGCAATATTTTTAATCGGGATTGCTACCATCGGATAGGGACTCAATAGATGCCGCTTCGGGAGGGGCTTTAATAGATAAAACCCCATCCGAAGCAATAAAGTTAGTCTCTAGAATGACTGAAAATTTCCAAACTTTTTCTAGTAGAACACTTGATTCTAATTCTTCTTCATCTTGTGATAATTCTGTCAAAGAACAAGTGAATTTACTAACTAAACTTTGTGCTTCTTTTGTGAAGGGGGAGGTTCCTAAAGTCATCTCTTGTTGAGTTTGTGGCCTATTTGGACACCACAACGATCAATGCCCATAAATTAAAGAGGTAAGTGTCATGGGAGGTTTTTGAAGAAATAATTCACAGAGTAACACCTACAACCCTAGTTGGAGAGATCATCTAAATCTTAGATGGGCAACTCAAGAACCAAAACCTACCAACACTCTTTCTTCATTATCATCATCGCAAGGTACGTACTTAGAGGAGATAGTCTCCAAGTTAGCTCTTAGCTCAAATAGTTTTAAAACAGATTTTGAAAAAAAACTTCGCTAAGTTGAGTGAACATACTGTTAGTTCAATTGGAGTAATAAAAAATGATATGGATGAATGCATCCATTTCTGAGTTAGGAGATAAACTTAATCAATTAGCAACGCACGTTCTTAAAACGAAAGGAAAAGGCAAACTTCCCGCCCAACGCAATCATGCTAATGTGAGTGCTATTACTTTAAGAAGTGGTAAAATTTTGAATGAAAATAATGATGTTTCTTTGCCTCAAAATGATCTTAACTTGAAAAGAAGCGATCCAAAAATTAGTGAAGAAAAGAAGGTACATGCTAACTCCTTTTTATCTAATGCTTGTTCATCTAATAATGATTCAAAGAACATTGTTGATAATCCTCTACCTCCTTTTCCTTGTAGGTTATCTCGACCAAGGAAAGAATTCAAAAATGACAAAGAACTCCTAGATGTTTTCAAGAAGGTAGAAGTGAACCTACTTCTCTTGACGACCATCAAAAGCATGCCAAGGTACGCAAAATTTCTTAAGAAGTTATGTACTCACAAGAGGATGAGAAGAAGCCAAGATAAGGTAATGGTTAGTAAAATTGTCTCTTCACTCATAAAGAAGAATCTTCCAGAAAAATGTGTTGATCCAGGTATGTTTTCACTTCCTTGCACTATAGGAAATAGAGACATATCTAGCGCCATGCTTGATTTAGGTGCATCAATTAATGTCATGCCTCTTAGTGTTTTCAAAGACTTAGGATTGAATGGACTTGAAAAGACTAGCATTTGTATTCAACTTGTCGATAGGTCTTTTGTTTCACCATTAGGGGTTGTTGAAGATGTCCTAGTTAAAGTACGAATTCTAATATTTTCCGCCGATTTTTACATGATTGAAATGAACAATAAATTTGCATGTACATCCCCTAACATACTTTCAGGAAGACCATTTTTGAAAACTGTTAATGTTATACTAAATGTTGATAAAGGTCTTCTTAGTGTTGAGTTTGATGGAGATGTTGTGTCTTTCAATATTTTTTATGATGTAAAGTCCTCTAATGATCATGTTTCATTGTGTGCACTTGATACTTTAGAATCATTAGAAACTTTAGAAAAGCATGATAAATTCAATGAGCTTATAGATCAAGCAACTCTAGAATATGTTGATTATGAATTTGCTAAGGAGAAACCTAGTCATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGTATGCTTTGGTTGATAATGTTACAACACTTGAACATCATGCTCTAGCTAATAATTTTGCAACTAGTAATGAACATGATTTAGGAAGAGATATTAAGAATGATGATGAGAAAATTTTGAAAACCATAGGCATTGGCAATGTTCATAACATAAACACCCACATAAAAAACCTTGAAAAAGAGAATGATTCTTGTGATTATTTGCATAAATAA
mRNA sequence
ATGGGAAAAGTGGCACCCAAAAATACCCTTAGAGAGCTATATGAGTCGGAGGTCCATCAAAGGCCAATAGAATCATTAGAAACTTTAGAAAAGCATGATAAATTCAATGAGCTTATAGATCAAGCAACTCTAGAATATGTTGATTATGAATTTGCTAAGGAGAAACCTAGTCATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGTATGCTTTGGTTGATAATGTTACAACACTTGAACATCATGCTCTAGCTAATAATTTTGCAACTAGTAATGAACATGATTTAGGAAGAGATATTAAGAATGATGATGAGAAAATTTTGAAAACCATAGGCATTGGCAATGTTCATAACATAAACACCCACATAAAAAACCTTGAAAAAGAGAATGATTCTTGTGATTATTTGCATAAATAA
Coding sequence (CDS)
ATGGGAAAAGTGGCACCCAAAAATACCCTTAGAGAGCTATATGAGTCGGAGGTCCATCAAAGGCCAATAGAATCATTAGAAACTTTAGAAAAGCATGATAAATTCAATGAGCTTATAGATCAAGCAACTCTAGAATATGTTGATTATGAATTTGCTAAGGAGAAACCTAGTCATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGTATGCTTTGGTTGATAATGTTACAACACTTGAACATCATGCTCTAGCTAATAATTTTGCAACTAGTAATGAACATGATTTAGGAAGAGATATTAAGAATGATGATGAGAAAATTTTGAAAACCATAGGCATTGGCAATGTTCATAACATAAACACCCACATAAAAAACCTTGAAAAAGAGAATGATTCTTGTGATTATTTGCATAAATAA
Protein sequence
MGKVAPKNTLRELYESEVHQRPIESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVTTLEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEKENDSCDYLHK
Homology
BLAST of PI0024585 vs. ExPASy TrEMBL
Match:
A0A5D3CW21 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00170 PE=4 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 6.5e-33
Identity = 83/140 (59.29%), Postives = 100/140 (71.43%), Query Frame = 0
Query: 2 GKVAPKNTLRELYESEVHQR-----PIESLETLEKHDKFNELIDQATLEYVDYEFAKEKP 61
G V + ++ S VH +ESL+ LE+HDKFNELIDQATLE+V+ EFAK KP
Sbjct: 124 GNVVSCSIFDDVKSSNVHVSLCALDTLESLKKLEEHDKFNELIDQATLEHVENEFAKNKP 183
Query: 62 SHDDLSTFLDFVTSINDEYALVDNVTTLEHHALANNFATSNEHDLGRDIKNDDEKILKTI 121
S DDLS FLDFVTS+NDEY LVDN+ T E H N+F +SNEHD GR+IK+D E ILK+I
Sbjct: 184 SDDDLSIFLDFVTSVNDEYVLVDNIATNE-HVPENDFVSSNEHDQGRNIKDDSEHILKSI 243
Query: 122 GIGNVHNINTHIKNLEKEND 137
I N H+ + HIKN EKEND
Sbjct: 244 VIENDHDTSIHIKNFEKEND 262
BLAST of PI0024585 vs. ExPASy TrEMBL
Match:
A0A5A7V4I7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00430 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 8.5e-33
Identity = 76/115 (66.09%), Postives = 90/115 (78.26%), Query Frame = 0
Query: 24 ESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVTT 83
ESLETLEKHD+F+ELIDQATLEYV+ EFAK KPS DD+S FLDF S+NDE+ LVDN+ T
Sbjct: 76 ESLETLEKHDQFDELIDQATLEYVENEFAKNKPSDDDISIFLDFFASVNDEHVLVDNIAT 135
Query: 84 LEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEKENDSC 139
E H L N+FA SNEHDLGR+IK+DDE ILK+IGI N H+ + HIK +C
Sbjct: 136 NEQHVLDNDFAYSNEHDLGRNIKDDDEHILKSIGIENDHDASIHIKCHTPSRTTC 190
BLAST of PI0024585 vs. ExPASy TrEMBL
Match:
A0A5A7VIZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001070 PE=4 SV=1)
HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 45 EYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVTTLEHHALANNFATSNEHDLGRD 104
++VD EFAKEKP+ DDLS FL+FVTSINDE+ALVDNVTT E HAL NNF +SNEHDLGRD
Sbjct: 308 DHVDNEFAKEKPTDDDLSIFLNFVTSINDEHALVDNVTTHEQHALGNNFTSSNEHDLGRD 367
Query: 105 IKNDDEKILKTIGIGNVHNINTHIKNLEKEND 137
IK+DDE+ILK+I I N H+INTHIKN EKEND
Sbjct: 368 IKDDDEQILKSIDIDNDHDINTHIKNFEKEND 399
BLAST of PI0024585 vs. ExPASy TrEMBL
Match:
A0A5D3D5G7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00040 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 9.7e-29
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 0
Query: 23 IESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVT 82
+E ET E+HDKFNEL DQATL++V+YEFAK KPS+DDLS FLDFV S+NDE+ LVDN+
Sbjct: 177 VEFGETQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLA 236
Query: 83 TLEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEKEND 137
T HH L N+FA+SNEHDLGR+I NDDE LK GI N +++ T++ + E D
Sbjct: 237 TNGHHVLDNDFASSNEHDLGRNINNDDEHTLK--GIDNENDLGTNVVEIAYEFD 288
BLAST of PI0024585 vs. ExPASy TrEMBL
Match:
A0A5D3DU65 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold394G00010 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 70/103 (67.96%), Postives = 83/103 (80.58%), Query Frame = 0
Query: 23 IESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVT 82
IESL+TL++HD+FN+LI+QATLEY+D EFAK KPS DDLS FLDFV S+NDE+ LVDN+
Sbjct: 173 IESLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIA 232
Query: 83 TLEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNIN 126
T E H L N+FA+SNEHDLGR+I NDDE LK I I N IN
Sbjct: 233 TNE-HVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGIN 274
BLAST of PI0024585 vs. NCBI nr
Match:
KAE8647060.1 (hypothetical protein Csa_022980 [Cucumis sativus])
HSP 1 Score: 155.6 bits (392), Expect = 3.2e-34
Identity = 85/127 (66.93%), Postives = 100/127 (78.74%), Query Frame = 0
Query: 23 IESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVT 82
+ESLETLE+ DK NELIDQATLEYVD EF+KEKPS DDLS FL+FV SINDE+ALVDNVT
Sbjct: 607 LESLETLEEQDKLNELIDQATLEYVDNEFSKEKPSDDDLSIFLEFVISINDEHALVDNVT 666
Query: 83 TLEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEK-----ENDS 142
T + HAL NNFA+S E DLGRDIK++DE+ LK I I N + + HI+ L+K END
Sbjct: 667 THKQHALGNNFASSKELDLGRDIKDEDEQTLKDISIDNEQDPSIHIRKLKKKENDLENDP 726
Query: 143 CD-YLHK 144
C+ YLHK
Sbjct: 727 CEVYLHK 733
BLAST of PI0024585 vs. NCBI nr
Match:
KAA0042324.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa] >TYK15448.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])
HSP 1 Score: 150.2 bits (378), Expect = 1.3e-32
Identity = 83/140 (59.29%), Postives = 100/140 (71.43%), Query Frame = 0
Query: 2 GKVAPKNTLRELYESEVHQR-----PIESLETLEKHDKFNELIDQATLEYVDYEFAKEKP 61
G V + ++ S VH +ESL+ LE+HDKFNELIDQATLE+V+ EFAK KP
Sbjct: 124 GNVVSCSIFDDVKSSNVHVSLCALDTLESLKKLEEHDKFNELIDQATLEHVENEFAKNKP 183
Query: 62 SHDDLSTFLDFVTSINDEYALVDNVTTLEHHALANNFATSNEHDLGRDIKNDDEKILKTI 121
S DDLS FLDFVTS+NDEY LVDN+ T E H N+F +SNEHD GR+IK+D E ILK+I
Sbjct: 184 SDDDLSIFLDFVTSVNDEYVLVDNIATNE-HVPENDFVSSNEHDQGRNIKDDSEHILKSI 243
Query: 122 GIGNVHNINTHIKNLEKEND 137
I N H+ + HIKN EKEND
Sbjct: 244 VIENDHDTSIHIKNFEKEND 262
BLAST of PI0024585 vs. NCBI nr
Match:
KAA0063162.1 (hypothetical protein E6C27_scaffold381G00430 [Cucumis melo var. makuwa])
HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 76/115 (66.09%), Postives = 90/115 (78.26%), Query Frame = 0
Query: 24 ESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVTT 83
ESLETLEKHD+F+ELIDQATLEYV+ EFAK KPS DD+S FLDF S+NDE+ LVDN+ T
Sbjct: 76 ESLETLEKHDQFDELIDQATLEYVENEFAKNKPSDDDISIFLDFFASVNDEHVLVDNIAT 135
Query: 84 LEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEKENDSC 139
E H L N+FA SNEHDLGR+IK+DDE ILK+IGI N H+ + HIK +C
Sbjct: 136 NEQHVLDNDFAYSNEHDLGRNIKDDDEHILKSIGIENDHDASIHIKCHTPSRTTC 190
BLAST of PI0024585 vs. NCBI nr
Match:
KAA0065429.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])
HSP 1 Score: 142.5 bits (358), Expect = 2.8e-30
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 45 EYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVTTLEHHALANNFATSNEHDLGRD 104
++VD EFAKEKP+ DDLS FL+FVTSINDE+ALVDNVTT E HAL NNF +SNEHDLGRD
Sbjct: 308 DHVDNEFAKEKPTDDDLSIFLNFVTSINDEHALVDNVTTHEQHALGNNFTSSNEHDLGRD 367
Query: 105 IKNDDEKILKTIGIGNVHNINTHIKNLEKEND 137
IK+DDE+ILK+I I N H+INTHIKN EKEND
Sbjct: 368 IKDDDEQILKSIDIDNDHDINTHIKNFEKEND 399
BLAST of PI0024585 vs. NCBI nr
Match:
KAA0050551.1 (uncharacterized protein E6C27_scaffold673G00050 [Cucumis melo var. makuwa] >TYK18791.1 uncharacterized protein E5676_scaffold945G00040 [Cucumis melo var. makuwa])
HSP 1 Score: 136.3 bits (342), Expect = 2.0e-28
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 0
Query: 23 IESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVT 82
+E ET E+HDKFNEL DQATL++V+YEFAK KPS+DDLS FLDFV S+NDE+ LVDN+
Sbjct: 177 VEFGETQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLA 236
Query: 83 TLEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEKEND 137
T HH L N+FA+SNEHDLGR+I NDDE LK GI N +++ T++ + E D
Sbjct: 237 TNGHHVLDNDFASSNEHDLGRNINNDDEHTLK--GIDNENDLGTNVVEIAYEFD 288
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CW21 | 6.5e-33 | 59.29 | Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va... | [more] |
A0A5A7V4I7 | 8.5e-33 | 66.09 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7VIZ2 | 1.4e-30 | 77.17 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... | [more] |
A0A5D3D5G7 | 9.7e-29 | 61.40 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DU65 | 2.8e-28 | 67.96 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |
KAE8647060.1 | 3.2e-34 | 66.93 | hypothetical protein Csa_022980 [Cucumis sativus] | [more] |
KAA0042324.1 | 1.3e-32 | 59.29 | Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var.... | [more] |
KAA0063162.1 | 1.8e-32 | 66.09 | hypothetical protein E6C27_scaffold381G00430 [Cucumis melo var. makuwa] | [more] |
KAA0065429.1 | 2.8e-30 | 77.17 | Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... | [more] |
KAA0050551.1 | 2.0e-28 | 61.40 | uncharacterized protein E6C27_scaffold673G00050 [Cucumis melo var. makuwa] >TYK1... | [more] |
Match Name | E-value | Identity | Description | |