PI0024585 (gene) Melon (PI 482460) v1

Overview


Name	PI0024585
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon 297 family
Location	chr11: 14229326 .. 14231772 (+)
RNA-Seq Expression	PI0024585
Synteny	PI0024585

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAGTGGCACCCAAAAATACCCTTAGAGAGCTATATGAGTCGGAGGTCCATCAAAGGCCAATAGGTATAGTGATTCCACCTACCACAACCAACTTTCATCGTAGGTCGGATTTGATCTCAAATTTATCCATCTTTAGAGGGTCCAATGGAGAAGACCCACATAAACACCTTAGAGATATTTCATGGACATGTGATCTCCTTAGACCTTATGGGGTAACCGAGGAACAATTGAATCTTAGGGCATTTCCCTTTTCCCTCGCCGATAGTGCCAAAAGATTGCTTATAAACCTAGAGCCTCAAACCATAACCACTTAGGAACAACTTAAGAAGAGATTCTTAGAAAAATTCTTCCCAATTACTAGAGTTCAAACGGTTTTAAAAGAAATCTATAGTGCTAGGCAATCTCATAATGAAACATTATTTGAATATTGGGAGAGGTATAATGAACTATGTGCTAGGTTGCCTTACAATCAATTGAATGAAAGGGACATTGTGCAATATTTTTAATCGGGATTGCTACCATCGGATAGGGACTCAATAGATGCCGCTTCGGGAGGGGCTTTAATAGATAAAACCCCATCCGAAGCAATAAAGTTAGTCTCTAGAATGACTGAAAATTTCCAAACTTTTTCTAGTAGAACACTTGATTCTAATTCTTCTTCATCTTGTGATAATTCTGTCAAAGAACAAGTGAATTTACTAACTAAACTTTGTGCTTCTTTTGTGAAGGGGGAGGTTCCTAAAGTCATCTCTTGTTGAGTTTGTGGCCTATTTGGACACCACAACGATCAATGCCCATAAATTAAAGAGGTAAGTGTCATGGGAGGTTTTTGAAGAAATAATTCACAGAGTAACACCTACAACCCTAGTTGGAGAGATCATCTAAATCTTAGATGGGCAACTCAAGAACCAAAACCTACCAACACTCTTTCTTCATTATCATCATCGCAAGGTACGTACTTAGAGGAGATAGTCTCCAAGTTAGCTCTTAGCTCAAATAGTTTTAAAACAGATTTTGAAAAAAAACTTCGCTAAGTTGAGTGAACATACTGTTAGTTCAATTGGAGTAATAAAAAATGATATGGATGAATGCATCCATTTCTGAGTTAGGAGATAAACTTAATCAATTAGCAACGCACGTTCTTAAAACGAAAGGAAAAGGCAAACTTCCCGCCCAACGCAATCATGCTAATGTGAGTGCTATTACTTTAAGAAGTGGTAAAATTTTGAATGAAAATAATGATGTTTCTTTGCCTCAAAATGATCTTAACTTGAAAAGAAGCGATCCAAAAATTAGTGAAGAAAAGAAGGTACATGCTAACTCCTTTTTATCTAATGCTTGTTCATCTAATAATGATTCAAAGAACATTGTTGATAATCCTCTACCTCCTTTTCCTTGTAGGTTATCTCGACCAAGGAAAGAATTCAAAAATGACAAAGAACTCCTAGATGTTTTCAAGAAGGTAGAAGTGAACCTACTTCTCTTGACGACCATCAAAAGCATGCCAAGGTACGCAAAATTTCTTAAGAAGTTATGTACTCACAAGAGGATGAGAAGAAGCCAAGATAAGGTAATGGTTAGTAAAATTGTCTCTTCACTCATAAAGAAGAATCTTCCAGAAAAATGTGTTGATCCAGGTATGTTTTCACTTCCTTGCACTATAGGAAATAGAGACATATCTAGCGCCATGCTTGATTTAGGTGCATCAATTAATGTCATGCCTCTTAGTGTTTTCAAAGACTTAGGATTGAATGGACTTGAAAAGACTAGCATTTGTATTCAACTTGTCGATAGGTCTTTTGTTTCACCATTAGGGGTTGTTGAAGATGTCCTAGTTAAAGTACGAATTCTAATATTTTCCGCCGATTTTTACATGATTGAAATGAACAATAAATTTGCATGTACATCCCCTAACATACTTTCAGGAAGACCATTTTTGAAAACTGTTAATGTTATACTAAATGTTGATAAAGGTCTTCTTAGTGTTGAGTTTGATGGAGATGTTGTGTCTTTCAATATTTTTTATGATGTAAAGTCCTCTAATGATCATGTTTCATTGTGTGCACTTGATACTTTAGAATCATTAGAAACTTTAGAAAAGCATGATAAATTCAATGAGCTTATAGATCAAGCAACTCTAGAATATGTTGATTATGAATTTGCTAAGGAGAAACCTAGTCATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGTATGCTTTGGTTGATAATGTTACAACACTTGAACATCATGCTCTAGCTAATAATTTTGCAACTAGTAATGAACATGATTTAGGAAGAGATATTAAGAATGATGATGAGAAAATTTTGAAAACCATAGGCATTGGCAATGTTCATAACATAAACACCCACATAAAAAACCTTGAAAAAGAGAATGATTCTTGTGATTATTTGCATAAATAA

mRNA sequence

ATGGGAAAAGTGGCACCCAAAAATACCCTTAGAGAGCTATATGAGTCGGAGGTCCATCAAAGGCCAATAGAATCATTAGAAACTTTAGAAAAGCATGATAAATTCAATGAGCTTATAGATCAAGCAACTCTAGAATATGTTGATTATGAATTTGCTAAGGAGAAACCTAGTCATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGTATGCTTTGGTTGATAATGTTACAACACTTGAACATCATGCTCTAGCTAATAATTTTGCAACTAGTAATGAACATGATTTAGGAAGAGATATTAAGAATGATGATGAGAAAATTTTGAAAACCATAGGCATTGGCAATGTTCATAACATAAACACCCACATAAAAAACCTTGAAAAAGAGAATGATTCTTGTGATTATTTGCATAAATAA

Coding sequence (CDS)

ATGGGAAAAGTGGCACCCAAAAATACCCTTAGAGAGCTATATGAGTCGGAGGTCCATCAAAGGCCAATAGAATCATTAGAAACTTTAGAAAAGCATGATAAATTCAATGAGCTTATAGATCAAGCAACTCTAGAATATGTTGATTATGAATTTGCTAAGGAGAAACCTAGTCATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGTATGCTTTGGTTGATAATGTTACAACACTTGAACATCATGCTCTAGCTAATAATTTTGCAACTAGTAATGAACATGATTTAGGAAGAGATATTAAGAATGATGATGAGAAAATTTTGAAAACCATAGGCATTGGCAATGTTCATAACATAAACACCCACATAAAAAACCTTGAAAAAGAGAATGATTCTTGTGATTATTTGCATAAATAA

Protein sequence

MGKVAPKNTLRELYESEVHQRPIESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVTTLEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEKENDSCDYLHK

Homology

[Close]

BLAST of PI0024585 vs. ExPASy TrEMBL
Match: A0A5D3CW21 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00170 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.5e-33
Identity = 83/140 (59.29%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 2   GKVAPKNTLRELYESEVHQR-----PIESLETLEKHDKFNELIDQATLEYVDYEFAKEKP 61
           G V   +   ++  S VH        +ESL+ LE+HDKFNELIDQATLE+V+ EFAK KP
Sbjct: 124 GNVVSCSIFDDVKSSNVHVSLCALDTLESLKKLEEHDKFNELIDQATLEHVENEFAKNKP 183

Query: 62  SHDDLSTFLDFVTSINDEYALVDNVTTLEHHALANNFATSNEHDLGRDIKNDDEKILKTI 121
           S DDLS FLDFVTS+NDEY LVDN+ T E H   N+F +SNEHD GR+IK+D E ILK+I
Sbjct: 184 SDDDLSIFLDFVTSVNDEYVLVDNIATNE-HVPENDFVSSNEHDQGRNIKDDSEHILKSI 243

Query: 122 GIGNVHNINTHIKNLEKEND 137
            I N H+ + HIKN EKEND
Sbjct: 244 VIENDHDTSIHIKNFEKEND 262

[Close]

BLAST of PI0024585 vs. ExPASy TrEMBL
Match: A0A5A7V4I7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00430 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.5e-33
Identity = 76/115 (66.09%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 24  ESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVTT 83
           ESLETLEKHD+F+ELIDQATLEYV+ EFAK KPS DD+S FLDF  S+NDE+ LVDN+ T
Sbjct: 76  ESLETLEKHDQFDELIDQATLEYVENEFAKNKPSDDDISIFLDFFASVNDEHVLVDNIAT 135

Query: 84  LEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEKENDSC 139
            E H L N+FA SNEHDLGR+IK+DDE ILK+IGI N H+ + HIK       +C
Sbjct: 136 NEQHVLDNDFAYSNEHDLGRNIKDDDEHILKSIGIENDHDASIHIKCHTPSRTTC 190

[Close]

BLAST of PI0024585 vs. ExPASy TrEMBL
Match: A0A5A7VIZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001070 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 45  EYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVTTLEHHALANNFATSNEHDLGRD 104
           ++VD EFAKEKP+ DDLS FL+FVTSINDE+ALVDNVTT E HAL NNF +SNEHDLGRD
Sbjct: 308 DHVDNEFAKEKPTDDDLSIFLNFVTSINDEHALVDNVTTHEQHALGNNFTSSNEHDLGRD 367

Query: 105 IKNDDEKILKTIGIGNVHNINTHIKNLEKEND 137
           IK+DDE+ILK+I I N H+INTHIKN EKEND
Sbjct: 368 IKDDDEQILKSIDIDNDHDINTHIKNFEKEND 399

[Close]

BLAST of PI0024585 vs. ExPASy TrEMBL
Match: A0A5D3D5G7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00040 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 9.7e-29
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 23  IESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVT 82
           +E  ET E+HDKFNEL DQATL++V+YEFAK KPS+DDLS FLDFV S+NDE+ LVDN+ 
Sbjct: 177 VEFGETQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLA 236

Query: 83  TLEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEKEND 137
           T  HH L N+FA+SNEHDLGR+I NDDE  LK  GI N +++ T++  +  E D
Sbjct: 237 TNGHHVLDNDFASSNEHDLGRNINNDDEHTLK--GIDNENDLGTNVVEIAYEFD 288

[Close]

BLAST of PI0024585 vs. ExPASy TrEMBL
Match: A0A5D3DU65 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold394G00010 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 70/103 (67.96%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 23  IESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVT 82
           IESL+TL++HD+FN+LI+QATLEY+D EFAK KPS DDLS FLDFV S+NDE+ LVDN+ 
Sbjct: 173 IESLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIA 232

Query: 83  TLEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNIN 126
           T E H L N+FA+SNEHDLGR+I NDDE  LK I I N   IN
Sbjct: 233 TNE-HVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGIN 274

[Close]

BLAST of PI0024585 vs. NCBI nr
Match: KAE8647060.1 (hypothetical protein Csa_022980 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.2e-34
Identity = 85/127 (66.93%), Postives = 100/127 (78.74%), Query Frame = 0


Query: 23  IESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVT 82
           +ESLETLE+ DK NELIDQATLEYVD EF+KEKPS DDLS FL+FV SINDE+ALVDNVT
Sbjct: 607 LESLETLEEQDKLNELIDQATLEYVDNEFSKEKPSDDDLSIFLEFVISINDEHALVDNVT 666

Query: 83  TLEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEK-----ENDS 142
           T + HAL NNFA+S E DLGRDIK++DE+ LK I I N  + + HI+ L+K     END 
Sbjct: 667 THKQHALGNNFASSKELDLGRDIKDEDEQTLKDISIDNEQDPSIHIRKLKKKENDLENDP 726

Query: 143 CD-YLHK 144
           C+ YLHK
Sbjct: 727 CEVYLHK 733

[Close]

BLAST of PI0024585 vs. NCBI nr
Match: KAA0042324.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa] >TYK15448.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-32
Identity = 83/140 (59.29%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 2   GKVAPKNTLRELYESEVHQR-----PIESLETLEKHDKFNELIDQATLEYVDYEFAKEKP 61
           G V   +   ++  S VH        +ESL+ LE+HDKFNELIDQATLE+V+ EFAK KP
Sbjct: 124 GNVVSCSIFDDVKSSNVHVSLCALDTLESLKKLEEHDKFNELIDQATLEHVENEFAKNKP 183

Query: 62  SHDDLSTFLDFVTSINDEYALVDNVTTLEHHALANNFATSNEHDLGRDIKNDDEKILKTI 121
           S DDLS FLDFVTS+NDEY LVDN+ T E H   N+F +SNEHD GR+IK+D E ILK+I
Sbjct: 184 SDDDLSIFLDFVTSVNDEYVLVDNIATNE-HVPENDFVSSNEHDQGRNIKDDSEHILKSI 243

Query: 122 GIGNVHNINTHIKNLEKEND 137
            I N H+ + HIKN EKEND
Sbjct: 244 VIENDHDTSIHIKNFEKEND 262

[Close]

BLAST of PI0024585 vs. NCBI nr
Match: KAA0063162.1 (hypothetical protein E6C27_scaffold381G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 76/115 (66.09%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 24  ESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVTT 83
           ESLETLEKHD+F+ELIDQATLEYV+ EFAK KPS DD+S FLDF  S+NDE+ LVDN+ T
Sbjct: 76  ESLETLEKHDQFDELIDQATLEYVENEFAKNKPSDDDISIFLDFFASVNDEHVLVDNIAT 135

Query: 84  LEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEKENDSC 139
            E H L N+FA SNEHDLGR+IK+DDE ILK+IGI N H+ + HIK       +C
Sbjct: 136 NEQHVLDNDFAYSNEHDLGRNIKDDDEHILKSIGIENDHDASIHIKCHTPSRTTC 190

[Close]

BLAST of PI0024585 vs. NCBI nr
Match: KAA0065429.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-30
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 45  EYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVTTLEHHALANNFATSNEHDLGRD 104
           ++VD EFAKEKP+ DDLS FL+FVTSINDE+ALVDNVTT E HAL NNF +SNEHDLGRD
Sbjct: 308 DHVDNEFAKEKPTDDDLSIFLNFVTSINDEHALVDNVTTHEQHALGNNFTSSNEHDLGRD 367

Query: 105 IKNDDEKILKTIGIGNVHNINTHIKNLEKEND 137
           IK+DDE+ILK+I I N H+INTHIKN EKEND
Sbjct: 368 IKDDDEQILKSIDIDNDHDINTHIKNFEKEND 399

[Close]

BLAST of PI0024585 vs. NCBI nr
Match: KAA0050551.1 (uncharacterized protein E6C27_scaffold673G00050 [Cucumis melo var. makuwa] >TYK18791.1 uncharacterized protein E5676_scaffold945G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-28
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 23  IESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSHDDLSTFLDFVTSINDEYALVDNVT 82
           +E  ET E+HDKFNEL DQATL++V+YEFAK KPS+DDLS FLDFV S+NDE+ LVDN+ 
Sbjct: 177 VEFGETQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNLA 236

Query: 83  TLEHHALANNFATSNEHDLGRDIKNDDEKILKTIGIGNVHNINTHIKNLEKEND 137
           T  HH L N+FA+SNEHDLGR+I NDDE  LK  GI N +++ T++  +  E D
Sbjct: 237 TNGHHVLDNDFASSNEHDLGRNINNDDEHTLK--GIDNENDLGTNVVEIAYEFD 288

The following BLAST results are available for this feature:

BLAST of PI0024585 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024585 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CW21	6.5e-33	59.29	Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va...	[more]
A0A5A7V4I7	8.5e-33	66.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VIZ2	1.4e-30	77.17	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5D3D5G7	9.7e-29	61.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DU65	2.8e-28	67.96	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0024585 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647060.1	3.2e-34	66.93	hypothetical protein Csa_022980 [Cucumis sativus]	[more]
KAA0042324.1	1.3e-32	59.29	Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var....	[more]
KAA0063162.1	1.8e-32	66.09	hypothetical protein E6C27_scaffold381G00430 [Cucumis melo var. makuwa]	[more]
KAA0065429.1	2.8e-30	77.17	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0050551.1	2.0e-28	61.40	uncharacterized protein E6C27_scaffold673G00050 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of PI0024585 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024585.1	PI0024585.1	mRNA