PI0024127 (gene) Melon (PI 482460) v1

Overview
NamePI0024127
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr10: 13697963 .. 13699398 (+)
RNA-Seq ExpressionPI0024127
SyntenyPI0024127
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCATTCCACATCGATAGCTTAGAAGAAAAGTATAAGGATTTGGAGTTTGCAAATAATGACGATGTTGTGAAGATCACCCTAGTTATACTACACAAAGATTGCAATGATGGGGAACAACAAGCAGAAAGGTGTAGTTGAAATTTAACCGTTCAAAGATGTCGGAGACATTGAGTACTTCAATAGCCTAGATTAGGGTACCGTTAATTAGAAGAGCACAATTGACGCCTTGAAGACCCATTGATTAGCAAAGTTAGTCGGTACAAAAAGAATGTTGATAAGAATAAAAATTATGTTGTGAAATACTGGCTTTGTGGATTTCCATAAGCATTCCAAGCAAAATATCATTTACATAATCATGTTGTTTACTTTGTTGTTTACTTTTCCGGACCATTTGATTTTTGATAAATTTTGTTTCTTATTTAGGCATAGGCATACGAGATTCTATCGACATCAGTAGCGAAAAATATTATCAATCGAAGGAGTAAGGTAGTCGTGCCTCATATATTGCATTGGTCATGTTCCCACTTGGTGTCCTTCAAAGTATTGGAGATAGACATTTTTTAGTCCCCAAATATAAGTATACCCAATGCATAATTAAATTAATTGACTTTTAAATTGAAACAAATTAACTGATCTATTTAGGTTATTAATGTAGATAACGATCAAGAGAGTCTTGTCATTACCGATACTAAAATTGAATTTAAGGATACCACAATAGACAGACGACCCATCTTCGATCTTGGGATGTATGATGAAAGCTCTGAAACTGACAGTAGGTCGAGTAGTAAAGGTTTTTTGGAGAGTTTAGTGAATGCTGAAGGTGATGGGAGAGACAAGGAAAATGATGATGAGATAGAGGAAATGTTTCGAGATGTAAATGGAGTGTGAGACCCATCCCTGCATTCTAAAGAAGGCGTTTTAAAGTGATGAAGTTTTGTTTATAAGGAAAAAGTTATTTAGTATTTTAAGTTTTGTTTCGCTCCGTGTTTACGCGAGAAGAAGAAGAAAATAGATTTAAGTGAAAGTTTAAGTTTTGGTCATTCCACGAAATAAAAAGTTCTGTTTCGCGAGATGATTGTAAAGGAGGTTTGAGTTGTAGTAGGCGAGGAAGAGTTCTCAGATTTGGTTTCAGCTAAGTTAGTGGAGAATCCCAAATCGGAAAGGGCGACGTTGATAACTCGTATAAATATAAGTTATTATAGTCTTTTAGGCGAAACAATGAAGTCAAAACGTGGAATAAATGGTCTTAACGAGTAATTTATAGTCAAAACACCTGATTAACTATGTTTTCAAGTGTTTTTGCACGCAGGAAGGCGAAAAGAGGAAAAATAGGCGAATCACATAGCAGCTACGCATCAAAGAAGAGTGTCTGGCGTGCTAAATCTGAAGGCGAGCTGCCACCACAACACTATGCGACGATGACTCGCTAA

mRNA sequence

ATGGCCTCATTCCACATCGATAGCTTAGAAGAAAAGTATAAGGATTTGGAGTTTGCAAATAATGACGATGTTGTGAAGATCACCCTAGCATACGAGATTCTATCGACATCAGTAGCGAAAAATATTATCAATCGAAGGAGTAAGGTTATTAATGTAGATAACGATCAAGAGAGTCTTGTCATTACCGATACTAAAATTGAATTTAAGGATACCACAATAGACAGACGACCCATCTTCGATCTTGGGATGTATGATGAAAGCTCTGAAACTGACAGTAGGTCGAGTAGTAAAGGTTTTTTGGAGAGTTTAGTGAATGCTGAAGGTGATGGGAGAGACAAGGAAAATGATGATGAGATAGAGGAAATGTTTCGAGATGTAAATGGAGTGAAGGCGAAAAGAGGAAAAATAGGCGAATCACATAGCAGCTACGCATCAAAGAAGAGTGTCTGGCGTGCTAAATCTGAAGGCGAGCTGCCACCACAACACTATGCGACGATGACTCGCTAA

Coding sequence (CDS)

ATGGCCTCATTCCACATCGATAGCTTAGAAGAAAAGTATAAGGATTTGGAGTTTGCAAATAATGACGATGTTGTGAAGATCACCCTAGCATACGAGATTCTATCGACATCAGTAGCGAAAAATATTATCAATCGAAGGAGTAAGGTTATTAATGTAGATAACGATCAAGAGAGTCTTGTCATTACCGATACTAAAATTGAATTTAAGGATACCACAATAGACAGACGACCCATCTTCGATCTTGGGATGTATGATGAAAGCTCTGAAACTGACAGTAGGTCGAGTAGTAAAGGTTTTTTGGAGAGTTTAGTGAATGCTGAAGGTGATGGGAGAGACAAGGAAAATGATGATGAGATAGAGGAAATGTTTCGAGATGTAAATGGAGTGAAGGCGAAAAGAGGAAAAATAGGCGAATCACATAGCAGCTACGCATCAAAGAAGAGTGTCTGGCGTGCTAAATCTGAAGGCGAGCTGCCACCACAACACTATGCGACGATGACTCGCTAA

Protein sequence

MASFHIDSLEEKYKDLEFANNDDVVKITLAYEILSTSVAKNIINRRSKVINVDNDQESLVITDTKIEFKDTTIDRRPIFDLGMYDESSETDSRSSSKGFLESLVNAEGDGRDKENDDEIEEMFRDVNGVKAKRGKIGESHSSYASKKSVWRAKSEGELPPQHYATMTR
Homology
[Close]
BLAST of PI0024127 vs. NCBI nr
Match: XP_038902177.1 (uncharacterized protein LOC120088810 [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 0 

Query: 13  YKDLEFANNDDVVKITL----------AYEILSTSVAKNIINRRSK--VINVDN--DQES 72
           YK    AN + VVK +L           YEIL++S+A NI  RRSK  +   +N   ++ 
Sbjct: 176 YKTRVKANKNYVVKYSLRGFSQAFYVWTYEILASSIAGNIAERRSKREIFESNNIKVKKG 235

Query: 73  LVITDTKIEFKDTTIDRRPIFDLGMYDESSETDSRSSSKGFLESLVNAEGDGRDKENDDE 121
            V++D + EF+DT +DRRPIF+LG  D+SSE+ +R +S+G       +E DG D   DD 
Sbjct: 236 TVMSDAEREFRDTLVDRRPIFELGGDDDSSESGNRLTSEG---GSPESESDGDDHRGDDN 294

[Close]
BLAST of PI0024127 vs. NCBI nr
Match: XP_038905789.1 (uncharacterized protein LOC120091745 [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-06
Identity = 47/113 (41.59%), Postives = 61/113 (53.98%), Query Frame = 0 

Query: 31  YEILSTSVAKNIINRRSKVI-------------------------NVDNDQESLVITDTK 90
           YEIL+ S+A NI  RRSKV                          N    +E LV+TDT+
Sbjct: 2   YEILAASIAGNIAERRSKVALPRILRWSCSHSVCFKVLERDIFESNNTKVKEGLVMTDTE 61

Query: 91  IEFKDTTIDRRPIFDLGMYDESSETDSRSSSKGFLESLVNAEGDGRDKENDDE 119
            EF DT +DR+PIFDLG  D+S+E+ SRSSS G  ES    +G+    +N+DE
Sbjct: 62  REFWDTPLDRQPIFDLGANDDSAESGSRSSSGGSFES----DGNDHRGDNNDE 110

[Close]
BLAST of PI0024127 vs. NCBI nr
Match: XP_038889364.1 (uncharacterized protein LOC120079280 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-06
Identity = 46/113 (40.71%), Postives = 61/113 (53.98%), Query Frame = 0 

Query: 31  YEILSTSVAKNIINRRSKVI-------------------------NVDNDQESLVITDTK 90
           YEIL+ S+A NI+ RRSKV                          N  N +  LV+T+ +
Sbjct: 81  YEILAASIAGNIVERRSKVALPHILRWSCSHSVSFKELERDIFESNNTNVKGGLVMTNAE 140

Query: 91  IEFKDTTIDRRPIFDLGMYDESSETDSRSSSKGFLESLVNAEGDGRDKENDDE 119
            EF+DT +DR+PIFDLG  D+S+E+ SRSSS G  ES    +GD     N+DE
Sbjct: 141 REFRDTPVDRQPIFDLGANDDSAESGSRSSSGGSSES----DGDDHRGGNNDE 189

[Close]
BLAST of PI0024127 vs. NCBI nr
Match: XP_038906048.1 (uncharacterized protein LOC120091949 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 9.0e-04
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 56  QESLVITDTKIEFKDTTIDRRPIFDLGMYDESSETDSRSSSKGFLESLVNAEGDGRDKEN 115
           +E +V+TD + EF+DT +DRRPIFDLG  D+S E+D++S S G  ES    +GD     N
Sbjct: 6   KEGIVMTDVEREFRDTPVDRRPIFDLGANDDSVESDNKSGSGGSPES----DGDDHRGGN 64

Query: 116 DDE 119
           +DE
Sbjct: 66  NDE 64

The following BLAST results are available for this feature:
BLAST of PI0024127 vs.
Match NameE-valueIdentityDescription
BLAST of PI0024127 vs.
Match NameE-valueIdentityDescription
BLAST of PI0024127 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902177.11.1e-0640.16uncharacterized protein LOC120088810 [Benincasa hispida][more]
XP_038905789.11.5e-0641.59uncharacterized protein LOC120091745 [Benincasa hispida][more]
XP_038889364.12.5e-0640.71uncharacterized protein LOC120079280 [Benincasa hispida][more]
XP_038906048.19.0e-0449.21uncharacterized protein LOC120091949 [Benincasa hispida][more]
BLAST of PI0024127 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024127.1PI0024127.1mRNA