PI0024104 (gene) Melon (PI 482460) v1

Overview


Name	PI0024104
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr04: 11805594 .. 11808326 (+)
RNA-Seq Expression	PI0024104
Synteny	PI0024104

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAGTTCCGTTATGGAAATGGTAAGTCACCCAACTTTTCTTTTCCTTATTCCATCCAACATTGTGTTACCATCTAACTTGTTTGTCATTGTTCATCTTTTTTGGATTATTCATTTCGCAACTTAATTTTGGTGAGGTAATACGGTTGGCATCACTTATTTTCATAGATTGAATCCTCTTAATTTATACTGTAATAATTAGTCACCTCTCTCTCAAACCATTGTTGTACTCGAAGTTTGAACTTTGAACTTCGAACTTGGTCTTATTTTGTTATTCCATGAATATATTAGTATACCTTTTTTTGTAACATATATTTGTCCTTTGCACTACTTTTTGCATTACTTTTTTGCTGTGTAAATAAAGCCTACCAAATTTCGTTTCGAAATTTCTCTTACGACTAATAACAAGCCTAGGAACTTAGTTTAGAAAAACACATTCTATTGACAAATTCATATATATTGTTGCAAAATAAGCAGAAATGAAAAATGATAGCAACCACAAATGAGGAAAAATGTACCTTGAAAAAAGTAAGTTATAGAATTTAAAATTTGTTATTTACCGGTTTAGATAATTCACTATCAATTTTGATTTCAAAATAGAGGATAGAGAGGGAGAGAACTATTATTTTCAAAAAAGTTGCAACTTTTTAACCATTTTTTTCTTTGCAAAATTAATAAAATGTTTAAAAACAAATTAGTCATATTAGATTATATATTTTTTTGTGACAAATTGGTACATGAAGAAATGAACAAATTCTTAGAACCAAAATATGTTAGGTTTATAACCAAGTTTCGTAGTGATGGGTTTATTAAAAAACATCCCTTCAATACTTGCTAGAAACGATTACAAAATTGTAACAATTTTATAACCAATTTTTTTGAAAAATGAATAAACTGTTTAGAACCAAATTAGTCATACAAGTGAACATTTGTTTTTTCGTTTCAAATTGCTACAGGAAGAAATTAACAAAATCCGTAGAACCCAAAGTTTCTTCCATACTTGCTACGAACGATTACAAAAACTTATTATAAAAATTCATAACTTATGAATAATGTATTTGAACAGGTTATTAGTATTGATCTTGCAATGGACCCACGAGAAATTGCTAGACTCCTAACCGTGTTCACAACTTCTCAACATCAGTTACTAATGATGTTGGAGTTATTAATGAACAACCACAGGATGATACAACATACAGCATACGACGCTAGGCATAGAATTAGGCAGCTAGCGTACTTCCGCATGATCCATGAATCTGACCTAGTATGTCGTCAAAGTACTAGAAGATGTTTTACCATTCTATGCCACCTACTTAGGACGACTTCTGCTTTAGTTTCGATGTCAAGGAGATGGTCGCCATGTTCCTCCACGTACTCGCGCGCAACGTGAAGAACCGAGTGATCCAAAGGGAGTTCGTGCGATCGGATGAGACAATTTCGCGATATTTCAACATAGTCTTGTTGGCAGTGCTACGCCTACATGGCGAGTTGTTGAAGAAAACTCAACCAGTAACGAAGGCATGCACGGATCCCAGATGGAAGTGGTTTGAGGTAGGGTACTTTATGAACGGAGGATAGTTGGACACGTTTACCTTTACAGTTTGCATATTTACAATCTTCCTACAATGCAGAATTGCCTAGGTGCGTTAAATGGCACATATATAAAGGTAAACGTGAGCATAACTGATCGTTTGAGATATAGGACATGGAAATGCGAAGTTACCACGAACGTCCTAGGTGTATGTGATACGAAAGGCGATTTTGTATTCGTCTTAGCTGGCCAAGAAGGGTCCACAACCGATTCCCGCATCCTTAGAGATGTTATTTCAAGACCTAACGGACTAAGGGTTCTGAAGGGTAAGAACATACCCATCCTTCTTCTCAACTATATTTTAAATGTTCGACAATAGGCATTTGAAACATTCGATATCCCAATAGGGTACTACTACCTATGCAATGTCGGGTATCCCAACGCTGAGGGTTTCCTGGCTCCATACAGAGGACAATGATACCACCTGCAAGAGTGGCGTGGAGCGGGAAATGCACCAACAGCAGCATGAGAGTTCTTCAACATGAAACATTCTTCTGCAAGGAATGTGATTGAAAGAGCATTTATTCTGTTGAAGGGTCGCTGGGCAATCCTTCGCAGGAAGTCACACTACCTGGTTGAAGCCCAATGTCACACGATAATGGCATGTTGTCTACTACACAATCTAATCAATAAAGAGATGACGAATGCTGATGTGATAGAGGATTACGACGAGGGTGATTCGACACATGCAACAACTGCAAGTGACGACATTCACTACATCGAAACCTCCAATGAATGGAGTTAGTGGAGGGATGATCTGGCCAAAGAAATGTTCAGTGAATGGGAGTTACGTGATCAGTAGTACCCTTACGTGACTTTTTAATTTTTGACACTTTAATTGTGTTTTTCAAACGTTTTAATATTTATTTGTGAATGTATGTGTATATTTACGACATCAATCAATAACTGATAAATCATTTGAAGGACAATGTACTATGTTGCATACTTTCTGGCTTATGTTACTAACTACTTTAATTGTGTTTTCGTATGTTTACTAGTATGGCAAGTTTCTCCCGGGCCCCAAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCGAGTCCTTGGTTAAGTTGGTATCCACTGGCAGCTGGAAGTTAGATAACGGTACCTTCCGTCCTGGGTACCTTGCTTAG

mRNA sequence

ATGTCCAGTTCCGTTATGGAAATGGTTATTAGTATTGATCTTGCAATGGACCCACGAGAAATTGCTAGACTCCTAACCGTGTTCACAACTTCTCAACATCAGTTACTAATGATGTTGGAGTTATTAATGAACAACCACAGGATGATACAACATACAGCATACGACGCTAGGCATAGAATTAGGCAGCTAGCGTACTTCCGCATGATCCATGAATCTGACCTAGACGACTTCTGCTTTAGTTTCGATGTCAAGGAGATGGTCGCCATGTTCCTCCACGTACTCGCGCGCAACGTGAAGAACCGAGTGATCCAAAGGGAGTTCGTGCGATCGGATGAGACAATTTCGCGATATTTCAACATAGTCTTGTTGGCAGTGCTACGCCTACATGGCGAGTTGTTGAAGAAAACTCAACCAGTAACGAAGGCATGCACGGATCCCAGATGGAAGTGGTTTGAGGTAGGTATGGCAAGTTTCTCCCGGGCCCCAAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCGAGTCCTTGGTTAAGTTGGTATCCACTGGCAGCTGGAAGTTAGATAACGGTACCTTCCGTCCTGGGTACCTTGCTTAG

Coding sequence (CDS)

ATGTCCAGTTCCGTTATGGAAATGGTTATTAGTATTGATCTTGCAATGGACCCACGAGAAATTGCTAGACTCCTAACCGTGTTCACAACTTCTCAACATCAGTTACTAATGATGTTGGAGTTATTAATGAACAACCACAGGATGATACAACATACAGCATACGACGCTAGGCATAGAATTAGGCAGCTAGCGTACTTCCGCATGATCCATGAATCTGACCTAGACGACTTCTGCTTTAGTTTCGATGTCAAGGAGATGGTCGCCATGTTCCTCCACGTACTCGCGCGCAACGTGAAGAACCGAGTGATCCAAAGGGAGTTCGTGCGATCGGATGAGACAATTTCGCGATATTTCAACATAGTCTTGTTGGCAGTGCTACGCCTACATGGCGAGTTGTTGAAGAAAACTCAACCAGTAACGAAGGCATGCACGGATCCCAGATGGAAGTGGTTTGAGGTAGGTATGGCAAGTTTCTCCCGGGCCCCAAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCGAGTCCTTGGTTAAGTTGGTATCCACTGGCAGCTGGAAGTTAGATAACGGTACCTTCCGTCCTGGGTACCTTGCTTAG

Protein sequence

MSSSVMEMVISIDLAMDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDLDDFCFSFDVKEMVAMFLHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFEVGMASFSRAPKHIWTKEEESYLVESLVKLVSTGSWKLDNGTFRPGYLA

Homology

[Close]

BLAST of PI0024104 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 95/162 (58.64%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 16  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL- 75
           MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 76  -------DDFCFSF-----------------DVKEMVAMFLHVLARNVKNRVIQREFVRS 135
                  D  CF+                  DV+EMVAMFLH+LA +VKNRVIQREF+RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 136 DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE 153
            ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RWKWFE
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFE 162

[Close]

BLAST of PI0024104 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.2e-39
Identity = 94/162 (58.02%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 16  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL- 75
           MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 76  -------DDFCFSF-----------------DVKEMVAMFLHVLARNVKNRVIQREFVRS 135
                  D  CF+                  DV+EMVAMFLH+LA +VKNRVIQREF+RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 136 DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE 153
            ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of PI0024104 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.2e-39
Identity = 94/162 (58.02%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 16  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL- 75
           MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 76  -------DDFCFSF-----------------DVKEMVAMFLHVLARNVKNRVIQREFVRS 135
                  D  CF+                  DV+EMVAMFLH+LA +VKNRVIQREF+RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 136 DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE 153
            ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of PI0024104 vs. ExPASy TrEMBL
Match: A0A5D3BZB1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00580 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.9e-39
Identity = 94/162 (58.02%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 16  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL- 75
           MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL 
Sbjct: 1   MDEHELASIVNAFIASQQQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 76  -------DDFCFSF-----------------DVKEMVAMFLHVLARNVKNRVIQREFVRS 135
                  D  CF+                  DV+EMVAMFLH+LA +VKNRVIQREF+RS
Sbjct: 61  CRQSTRMDRRCFTILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 136 DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE 153
            ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Sbjct: 121 SETISRHFNMVLLAVIRLHEELLKKPQPVPNDCTDQRWRWFE 162

[Close]

BLAST of PI0024104 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.9e-39
Identity = 94/162 (58.02%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 16  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL- 75
           MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 76  -------DDFCFSF-----------------DVKEMVAMFLHVLARNVKNRVIQREFVRS 135
                  D  CF+                  DV+EMVAMFLH+LA +VKNRVIQREF+RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 136 DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE 153
            ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of PI0024104 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-39
Identity = 95/162 (58.64%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 16  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL- 75
           MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 76  -------DDFCFSF-----------------DVKEMVAMFLHVLARNVKNRVIQREFVRS 135
                  D  CF+                  DV+EMVAMFLH+LA +VKNRVIQREF+RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 136 DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE 153
            ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RWKWFE
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFE 162

[Close]

BLAST of PI0024104 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 4.6e-39
Identity = 94/162 (58.02%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 16  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL- 75
           MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 76  -------DDFCFSF-----------------DVKEMVAMFLHVLARNVKNRVIQREFVRS 135
                  D  CF+                  DV+EMVAMFLH+LA +VKNRVIQREF+RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 136 DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE 153
            ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of PI0024104 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 4.6e-39
Identity = 94/162 (58.02%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 16  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL- 75
           MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 76  -------DDFCFSF-----------------DVKEMVAMFLHVLARNVKNRVIQREFVRS 135
                  D  CF+                  DV+EMVAMFLH+LA +VKNRVIQREF+RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 136 DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE 153
            ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of PI0024104 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 6.0e-39
Identity = 94/162 (58.02%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 16  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL- 75
           MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 76  -------DDFCFSF-----------------DVKEMVAMFLHVLARNVKNRVIQREFVRS 135
                  D  CF+                  DV+EMVAMFLH+LA +VKNRVIQREF+RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 136 DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE 153
            ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of PI0024104 vs. NCBI nr
Match: KAA0047074.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05083.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 6.0e-39
Identity = 94/162 (58.02%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 16  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL- 75
           MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL 
Sbjct: 1   MDEHELASIVNAFIASQQQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 76  -------DDFCFSF-----------------DVKEMVAMFLHVLARNVKNRVIQREFVRS 135
                  D  CF+                  DV+EMVAMFLH+LA +VKNRVIQREF+RS
Sbjct: 61  CRQSTRMDRRCFTILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 136 DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE 153
            ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Sbjct: 121 SETISRHFNMVLLAVIRLHEELLKKPQPVPNDCTDQRWRWFE 162

[Close]

BLAST of PI0024104 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 3.0e-04
Identity = 23/70 (32.86%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 83  VKEMVAMFLHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRL---------HGELL 142
           ++  +A+FL ++  N++ R +Q  F  S ETISR+FN VL AV+ +         + + L
Sbjct: 74  IEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFFQPNSNSDTL 133

Query: 143 KKTQPVTKAC 144
           +   P  K C
Sbjct: 134 ENDDPYFKDC 143

The following BLAST results are available for this feature:

BLAST of PI0024104 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024104 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U476	1.3e-39	58.64	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXW1	2.2e-39	58.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWD8	2.2e-39	58.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BZB1	2.9e-39	58.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	2.9e-39	58.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0024104 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048361.1	2.7e-39	58.64	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046727.1	4.6e-39	58.02	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0034843.1	4.6e-39	58.02	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035620.1	6.0e-39	58.02	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0047074.1	6.0e-39	58.02	retrotransposon protein [Cucumis melo var. makuwa] >TYK05083.1 retrotransposon p...	[more]

BLAST of PI0024104 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	3.0e-04	32.86	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 82..152
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 82..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024104.1	PI0024104.1	mRNA