Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCTAGAGGCAACACTTCTAAAGCTTTAAGCGACATCAGTAAAATGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGGATATGCCACTATTTGAGTTCGCAAATAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGAAATTATAATAAAAGAAAATTATGTGATTGATGAGCACAATTCATCCTCTAAACGCTCAAGTGAAGAGATGCCTCACCCAGATATAATGTCGGTTATGGTGACTGACGTGGATACAAGTGAAGATAGAATAGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCGTGATGCTGTTGAATCAAGTCACTCATATACCATCAAGAATAAGAACAAAGGGAAGGCAATTTTGCAAGAAAGTCAACCACAAAATTCGACCTCAATTGCATCGCTGTCTGTTCAACAATTGTAGGATATGATAGCAAACTCCATCCGGACTCAATATGGTGGAACTGCTCAAACTTTCTCTTTGTATTCCAAGCCATATACGAAGAGGATCGACAATCTGAGAATGTCGAATGGATACCAACCATCCAAGTTCCAACAATTTGATGGAAAAGGAACTCCAAAGCAACATGTTGCTCACTTTGGATCTTTGGAGCCTGTTGTTATATATTCTTCACCAGAGGCCTTACAAAATAATGACCTCCGAACTGTTTACTCCAAAGAAGAAGAAAAGCAGGTGAAGGATGCTGATGAGGGATGGACGCTAGTAACGCTTCGAAAGAAGCATAAGCAAAATTTTTCTAAAAAAGAATCTCATTCGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAGGCAAGTAAGAATGCGAGAAAGTTTCAACCAATCACTAAAGAAGGTGAGGAGCTTCCTCAACCACGATAACTAATAACTTTGAAAGATTTCTTCCCTGAAAACTTTTCATTGGAAATCGTTTCGTGTCATGTTGTCAGTACAATTGAGGATGACGCTTCTCTCTCAAATCTCGCAGAGTCAACAACCAAGTTAGAGGAATTGCCTTCTATAGGCATAAATGATTTGTTGTCACTCTCACAAGAAATCAAGGATACAATTATCGAGATATTAAAAAATGATGATGTCTCGACTATTCCTGCATCACAAACGGAGGCATTTGATTCATGTTGTATATCGATATCATTCAGCGATGAGGATTTGTAACTTGGGTCAAGGCTTCATAACAGACCTTTATTTGTGTCTGGATATGTTCGAGAGCAAACACTCAATCAAATTCTCATTGATAATGGTTTTTTCATCAACATTCTACCAAAGTCAACCATGAATCGATTGGGTATCTCAATTAAAGAGTTATCGAGCAGTAAATTGGTGATTCAAGGCTTTAATCAAGGAGCACAGCGAGCGATAGGCACTGTTCGTTTGGAGATCACCATAGGGGATTTGCAGGCAAGCACTATATTTATGTGATCGATTCAAAGACCACTTACAAGTTGTTGTTAGGGCGTCCATGGATTCCCGAAAACGGAGTAGTAACCTCCACGCTCCACCAATGCTTTAAATTTTATAAATAGAGAATTAGGAAGGTTGATGCTGACACTAAGCCATTTTCAGAGGCTGAGTCTCACTTTGCGGATGCGATGATATAAGTGAAGTCATATCAACTGAAGTTTTCGTGGCCAAAGGCACTTATAAGCCTGAGCAAAGAACGATCACAACAAAGAAGTCAAATGAAGTGGATGCACTCAATGGTCGAGAGAATGATGAACTAACGATCCAAGTTAAGTCTGAAGTGCCAACAAATGAAAGGATACCAATCCCTAAAGAAATAGCCTCAAAACCTCCCATTTTACGCTACATTCCACTGTCTCGACATAAGAAGGGAGAATCGCCATTTGCAGAAGGTTCATAAAAATTAATAGTTGGAGGCATCGAAATATTAAAGGAAAGCTTCACCACACTCCATACCAAGATGGATAAAGGAGAGGCGAATAGATTTTAGAAAGAGAGCATAAAAGCATTCCTTCTAGAAAAACGAACGATAGAGGGATTTGATCCAAAGGCATATAAGTTGATGGCAAAGGTCGGTTATGACTTTACAACCCTTACTGAGCTTATAAGTGTGAAGATATTTGACGAAAGGCATGAGCTTTCCCTTACGCAAAAGAAGCTTAAAAAATAAGGATATTTTATACCTAATTTATGATCAGGAGTTGGGTATAAGTTTTCCGAGCCGATTCGAATAACTGGTAAAGGAAAAGTAAAAGTTGCTGACACATTCCACATTACTATTGAAGAAAGCAACGATTCTACAGAAGACGAGCAAAGCAAAAGTCAAAGGAGTTCTGTTTTTTTATCACATCACCTCTTCTACTGCACTCCCTTCAGTTTTTCAGAGATTAAACACAACTTCGGTTACAAGAACGTCTGCCTTCAAAAGGTTAAGCGTGTCGACGACAAAGACTAG
mRNA sequence
ATGACGTCTAGAGGCAACACTTCTAAAGCTTTAAGCGACATCAGTAAAATGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGGATATGCCACTATTTGAGTTCGCAAATAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGAAATTATAATAAAAGAAAATTATGTGATTGATGAGCACAATTCATCCTCTAAACGCTCAAGTGAAGAGATGCCTCACCCAGATATAATGTCGGTTATGGTGACTGACGTGGATACAAGTGAAGATAGAATAGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCGTGATGCTGTTGAATCAAGTCACTCATATACCATCAAGAATAAGAACAAAGGGAAGGCAATTTTGCAAGAAAAGGCCTTACAAAATAATGACCTCCGAACTGTTTACTCCAAAGAAGAAGAAAAGCAGGTGAAGGATGCTGATGAGGGATGGACGCTAGTAACGCTTCGAAAGAAGCATAAGCAAAATTTTTCTAAAAAAGAATCTCATTCGTACCGAGAGTATAAAAGAAAGGGCACTTATAAGCCTGAGCAAAGAACGATCACAACAAAGAAGTCAAATGAAGTGGATGCACTCAATGGTCGAGAGAATGATGAACTAACGATCCAAGTTAAGTCTGAAGTGCCAACAAATGAAAGGATACCAATCCCTAAAGAAATAGCCTCAAAACCTCCCATTTTACGCTACATTCCACTGTCTCGACATAAGAAGGGAGAATCGCCATTTGCAGAAGGAGTTGGGTATAAGTTTTCCGAGCCGATTCGAATAACTGGTAAAGGAAAAGTAAAAGTTGCTGACACATTCCACATTACTATTGAAGAAAGCAACGATTCTACAGAAGACGAGCAAAGCAAAAGTCAAAGGAGTTCTGTTTTTTTATCACATCACCTCTTCTACTGCACTCCCTTCAGTTTTTCAGAGATTAAACACAACTTCGGTTACAAGAACGTCTGCCTTCAAAAGGTTAAGCGTGTCGACGACAAAGACTAG
Coding sequence (CDS)
ATGACGTCTAGAGGCAACACTTCTAAAGCTTTAAGCGACATCAGTAAAATGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGGATATGCCACTATTTGAGTTCGCAAATAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGAAATTATAATAAAAGAAAATTATGTGATTGATGAGCACAATTCATCCTCTAAACGCTCAAGTGAAGAGATGCCTCACCCAGATATAATGTCGGTTATGGTGACTGACGTGGATACAAGTGAAGATAGAATAGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCGTGATGCTGTTGAATCAAGTCACTCATATACCATCAAGAATAAGAACAAAGGGAAGGCAATTTTGCAAGAAAAGGCCTTACAAAATAATGACCTCCGAACTGTTTACTCCAAAGAAGAAGAAAAGCAGGTGAAGGATGCTGATGAGGGATGGACGCTAGTAACGCTTCGAAAGAAGCATAAGCAAAATTTTTCTAAAAAAGAATCTCATTCGTACCGAGAGTATAAAAGAAAGGGCACTTATAAGCCTGAGCAAAGAACGATCACAACAAAGAAGTCAAATGAAGTGGATGCACTCAATGGTCGAGAGAATGATGAACTAACGATCCAAGTTAAGTCTGAAGTGCCAACAAATGAAAGGATACCAATCCCTAAAGAAATAGCCTCAAAACCTCCCATTTTACGCTACATTCCACTGTCTCGACATAAGAAGGGAGAATCGCCATTTGCAGAAGGAGTTGGGTATAAGTTTTCCGAGCCGATTCGAATAACTGGTAAAGGAAAAGTAAAAGTTGCTGACACATTCCACATTACTATTGAAGAAAGCAACGATTCTACAGAAGACGAGCAAAGCAAAAGTCAAAGGAGTTCTGTTTTTTTATCACATCACCTCTTCTACTGCACTCCCTTCAGTTTTTCAGAGATTAAACACAACTTCGGTTACAAGAACGTCTGCCTTCAAAAGGTTAAGCGTGTCGACGACAAAGACTAG
Protein sequence
MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQRTITTKKSNEVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYIPLSRHKKGESPFAEGVGYKFSEPIRITGKGKVKVADTFHITIEESNDSTEDEQSKSQRSSVFLSHHLFYCTPFSFSEIKHNFGYKNVCLQKVKRVDDKD
Homology
BLAST of PI0022479 vs. ExPASy TrEMBL
Match:
A0A5A7U9H0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001980 PE=4 SV=1)
HSP 1 Score: 238.0 bits (606), Expect = 6.0e-59
Identity = 125/156 (80.13%), Postives = 140/156 (89.74%), Query Frame = 0
Query: 1 MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
MTS+GNTSKALSDI K PNTRSRSR+ QSSEDMP FE ANNIWEQ+SKPPKG I+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKWPNTRSRSRQIQSSEDMPPFEVANNIWEQISKPPKGGIVIKENP 60
Query: 61 VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
IDEHNS S+RS+EE P P+IMSVMVTDVDTSEDR+AELEKKVNML+KAVEERD+EIASL
Sbjct: 61 AIDEHNSLSERSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASL 120
Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN 157
KNHIESRDA+ESSH++ IKN NKGKAI+QE QN+
Sbjct: 121 KNHIESRDAIESSHTHIIKNVNKGKAIMQESQPQNS 156
BLAST of PI0022479 vs. ExPASy TrEMBL
Match:
A0A5D3CSH0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00190 PE=4 SV=1)
HSP 1 Score: 235.3 bits (599), Expect = 3.9e-58
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0
Query: 1 MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60
Query: 61 VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELEKKVNML+K VEERDYEIA L
Sbjct: 61 AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120
Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN 156
KNHIESRDA ESSH +T+KN +KGKA++QE QN
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155
BLAST of PI0022479 vs. ExPASy TrEMBL
Match:
A0A5A7T892 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001980 PE=4 SV=1)
HSP 1 Score: 235.3 bits (599), Expect = 3.9e-58
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0
Query: 1 MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60
Query: 61 VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELEKKVNML+K VEERDYEIA L
Sbjct: 61 AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120
Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN 156
KNHIESRDA ESSH +T+KN +KGKA++QE QN
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155
BLAST of PI0022479 vs. ExPASy TrEMBL
Match:
A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)
HSP 1 Score: 234.6 bits (597), Expect = 6.6e-58
Identity = 123/156 (78.85%), Postives = 139/156 (89.10%), Query Frame = 0
Query: 1 MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60
Query: 61 VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
+DEHNS S+RS+EE+P P+IMSVMVTDVDTSEDR+AELEKKVNML+KAVEERD+EIA L
Sbjct: 61 AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120
Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN 157
KNHIESRDA ESSH++TIKN NKGKAI+QE QN+
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNS 156
BLAST of PI0022479 vs. ExPASy TrEMBL
Match:
A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 7.9e-19
Identity = 75/224 (33.48%), Postives = 94/224 (41.96%), Query Frame = 0
Query: 204 KGTYKPEQRTITTKKSNEVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYI 263
KGT+K EQ IT+KKS++ DALN ++N ELT + K P E+I ++ S PP+LRYI
Sbjct: 897 KGTFKNEQEMITSKKSSKGDALNSQQNGELTTETKLRAPEAEKIATLQKEVSNPPVLRYI 956
Query: 264 PLSRHKKGESPFAE---------------------------------------------- 323
PLSR KKGESPF E
Sbjct: 957 PLSRRKKGESPFTECSKNLTVKNTEILKENFTAPLTKIEKGEAKKIEKKDLQAYLPERRT 1016
Query: 324 --------------------------------------------------------GVGY 326
G+GY
Sbjct: 1017 VEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPELSPTQKKLQKQGYSIPNSRAGIGY 1076
HSP 2 Score: 65.5 bits (158), Expect = 5.3e-07
Identity = 48/107 (44.86%), Postives = 58/107 (54.21%), Query Frame = 0
Query: 153 LQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQR 212
LQNND R KEEEKQV + +EGWTLVT RKK KQ+FS+KES +YR Y+ KG QR
Sbjct: 552 LQNNDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKG---KSQR 611
Query: 213 TITTKKSNE----VDALNGRENDELTIQVKSEVPTNERIPIPKEIAS 256
T K + ++ G I +K P N P EI S
Sbjct: 612 RNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFPKN----FPMEIVS 651
HSP 3 Score: 234.6 bits (597), Expect = 6.6e-58
Identity = 124/166 (74.70%), Postives = 142/166 (85.54%), Query Frame = 0
Query: 1 MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60
Query: 61 VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
IDEHNS S+RS+EE+P P+IMS+MVTDVDTSEDR+AELEKKVNML+K VEERD+EIA L
Sbjct: 61 AIDEHNSLSERSNEEVPQPNIMSIMVTDVDTSEDRMAELEKKVNMLMKVVEERDFEIALL 120
Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEE 167
KNHIESRDA ESSH++TIKN NKGKAI+QE QN+ +S E+
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASFSMEK 166
BLAST of PI0022479 vs. NCBI nr
Match:
KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 238.0 bits (606), Expect = 1.2e-58
Identity = 125/156 (80.13%), Postives = 140/156 (89.74%), Query Frame = 0
Query: 1 MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
MTS+GNTSKALSDI K PNTRSRSR+ QSSEDMP FE ANNIWEQ+SKPPKG I+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKWPNTRSRSRQIQSSEDMPPFEVANNIWEQISKPPKGGIVIKENP 60
Query: 61 VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
IDEHNS S+RS+EE P P+IMSVMVTDVDTSEDR+AELEKKVNML+KAVEERD+EIASL
Sbjct: 61 AIDEHNSLSERSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASL 120
Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN 157
KNHIESRDA+ESSH++ IKN NKGKAI+QE QN+
Sbjct: 121 KNHIESRDAIESSHTHIIKNVNKGKAIMQESQPQNS 156
BLAST of PI0022479 vs. NCBI nr
Match:
KAA0039098.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 235.3 bits (599), Expect = 8.0e-58
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0
Query: 1 MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60
Query: 61 VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELEKKVNML+K VEERDYEIA L
Sbjct: 61 AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120
Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN 156
KNHIESRDA ESSH +T+KN +KGKA++QE QN
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155
BLAST of PI0022479 vs. NCBI nr
Match:
TYK14887.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 235.3 bits (599), Expect = 8.0e-58
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0
Query: 1 MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60
Query: 61 VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELEKKVNML+K VEERDYEIA L
Sbjct: 61 AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120
Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN 156
KNHIESRDA ESSH +T+KN +KGKA++QE QN
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155
BLAST of PI0022479 vs. NCBI nr
Match:
KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])
HSP 1 Score: 234.6 bits (597), Expect = 1.4e-57
Identity = 123/156 (78.85%), Postives = 139/156 (89.10%), Query Frame = 0
Query: 1 MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60
Query: 61 VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
+DEHNS S+RS+EE+P P+IMSVMVTDVDTSEDR+AELEKKVNML+KAVEERD+EIA L
Sbjct: 61 AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120
Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN 157
KNHIESRDA ESSH++TIKN NKGKAI+QE QN+
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNS 156
BLAST of PI0022479 vs. NCBI nr
Match:
KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])
HSP 1 Score: 104.8 bits (260), Expect = 1.6e-18
Identity = 75/224 (33.48%), Postives = 94/224 (41.96%), Query Frame = 0
Query: 204 KGTYKPEQRTITTKKSNEVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYI 263
KGT+K EQ IT+KKS++ DALN ++N ELT + K P E+I ++ S PP+LRYI
Sbjct: 897 KGTFKNEQEMITSKKSSKGDALNSQQNGELTTETKLRAPEAEKIATLQKEVSNPPVLRYI 956
Query: 264 PLSRHKKGESPFAE---------------------------------------------- 323
PLSR KKGESPF E
Sbjct: 957 PLSRRKKGESPFTECSKNLTVKNTEILKENFTAPLTKIEKGEAKKIEKKDLQAYLPERRT 1016
Query: 324 --------------------------------------------------------GVGY 326
G+GY
Sbjct: 1017 VEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPELSPTQKKLQKQGYSIPNSRAGIGY 1076
HSP 2 Score: 65.5 bits (158), Expect = 1.1e-06
Identity = 48/107 (44.86%), Postives = 58/107 (54.21%), Query Frame = 0
Query: 153 LQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQR 212
LQNND R KEEEKQV + +EGWTLVT RKK KQ+FS+KES +YR Y+ KG QR
Sbjct: 552 LQNNDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKG---KSQR 611
Query: 213 TITTKKSNE----VDALNGRENDELTIQVKSEVPTNERIPIPKEIAS 256
T K + ++ G I +K P N P EI S
Sbjct: 612 RNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFPKN----FPMEIVS 651
HSP 3 Score: 234.6 bits (597), Expect = 1.4e-57
Identity = 124/166 (74.70%), Postives = 142/166 (85.54%), Query Frame = 0
Query: 1 MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60
Query: 61 VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
IDEHNS S+RS+EE+P P+IMS+MVTDVDTSEDR+AELEKKVNML+K VEERD+EIA L
Sbjct: 61 AIDEHNSLSERSNEEVPQPNIMSIMVTDVDTSEDRMAELEKKVNMLMKVVEERDFEIALL 120
Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEE 167
KNHIESRDA ESSH++TIKN NKGKAI+QE QN+ +S E+
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASFSMEK 166
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U9H0 | 6.0e-59 | 80.13 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3CSH0 | 3.9e-58 | 79.35 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7T892 | 3.9e-58 | 79.35 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7TZU9 | 6.6e-58 | 78.85 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... | [more] |
A0A5A7TZU9 | 7.9e-19 | 33.48 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... | [more] |
Match Name | E-value | Identity | Description | |
KAA0051994.1 | 1.2e-58 | 80.13 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp... | [more] |
KAA0039098.1 | 8.0e-58 | 79.35 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK14887.1 | 8.0e-58 | 79.35 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0047477.1 | 1.4e-57 | 78.85 | uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa] | [more] |
KAA0047477.1 | 1.6e-18 | 33.48 | uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |