PI0022479 (gene) Melon (PI 482460) v1

Overview


Name	PI0022479
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr01: 12937267 .. 12939790 (+)
RNA-Seq Expression	PI0022479
Synteny	PI0022479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCTAGAGGCAACACTTCTAAAGCTTTAAGCGACATCAGTAAAATGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGGATATGCCACTATTTGAGTTCGCAAATAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGAAATTATAATAAAAGAAAATTATGTGATTGATGAGCACAATTCATCCTCTAAACGCTCAAGTGAAGAGATGCCTCACCCAGATATAATGTCGGTTATGGTGACTGACGTGGATACAAGTGAAGATAGAATAGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCGTGATGCTGTTGAATCAAGTCACTCATATACCATCAAGAATAAGAACAAAGGGAAGGCAATTTTGCAAGAAAGTCAACCACAAAATTCGACCTCAATTGCATCGCTGTCTGTTCAACAATTGTAGGATATGATAGCAAACTCCATCCGGACTCAATATGGTGGAACTGCTCAAACTTTCTCTTTGTATTCCAAGCCATATACGAAGAGGATCGACAATCTGAGAATGTCGAATGGATACCAACCATCCAAGTTCCAACAATTTGATGGAAAAGGAACTCCAAAGCAACATGTTGCTCACTTTGGATCTTTGGAGCCTGTTGTTATATATTCTTCACCAGAGGCCTTACAAAATAATGACCTCCGAACTGTTTACTCCAAAGAAGAAGAAAAGCAGGTGAAGGATGCTGATGAGGGATGGACGCTAGTAACGCTTCGAAAGAAGCATAAGCAAAATTTTTCTAAAAAAGAATCTCATTCGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAGGCAAGTAAGAATGCGAGAAAGTTTCAACCAATCACTAAAGAAGGTGAGGAGCTTCCTCAACCACGATAACTAATAACTTTGAAAGATTTCTTCCCTGAAAACTTTTCATTGGAAATCGTTTCGTGTCATGTTGTCAGTACAATTGAGGATGACGCTTCTCTCTCAAATCTCGCAGAGTCAACAACCAAGTTAGAGGAATTGCCTTCTATAGGCATAAATGATTTGTTGTCACTCTCACAAGAAATCAAGGATACAATTATCGAGATATTAAAAAATGATGATGTCTCGACTATTCCTGCATCACAAACGGAGGCATTTGATTCATGTTGTATATCGATATCATTCAGCGATGAGGATTTGTAACTTGGGTCAAGGCTTCATAACAGACCTTTATTTGTGTCTGGATATGTTCGAGAGCAAACACTCAATCAAATTCTCATTGATAATGGTTTTTTCATCAACATTCTACCAAAGTCAACCATGAATCGATTGGGTATCTCAATTAAAGAGTTATCGAGCAGTAAATTGGTGATTCAAGGCTTTAATCAAGGAGCACAGCGAGCGATAGGCACTGTTCGTTTGGAGATCACCATAGGGGATTTGCAGGCAAGCACTATATTTATGTGATCGATTCAAAGACCACTTACAAGTTGTTGTTAGGGCGTCCATGGATTCCCGAAAACGGAGTAGTAACCTCCACGCTCCACCAATGCTTTAAATTTTATAAATAGAGAATTAGGAAGGTTGATGCTGACACTAAGCCATTTTCAGAGGCTGAGTCTCACTTTGCGGATGCGATGATATAAGTGAAGTCATATCAACTGAAGTTTTCGTGGCCAAAGGCACTTATAAGCCTGAGCAAAGAACGATCACAACAAAGAAGTCAAATGAAGTGGATGCACTCAATGGTCGAGAGAATGATGAACTAACGATCCAAGTTAAGTCTGAAGTGCCAACAAATGAAAGGATACCAATCCCTAAAGAAATAGCCTCAAAACCTCCCATTTTACGCTACATTCCACTGTCTCGACATAAGAAGGGAGAATCGCCATTTGCAGAAGGTTCATAAAAATTAATAGTTGGAGGCATCGAAATATTAAAGGAAAGCTTCACCACACTCCATACCAAGATGGATAAAGGAGAGGCGAATAGATTTTAGAAAGAGAGCATAAAAGCATTCCTTCTAGAAAAACGAACGATAGAGGGATTTGATCCAAAGGCATATAAGTTGATGGCAAAGGTCGGTTATGACTTTACAACCCTTACTGAGCTTATAAGTGTGAAGATATTTGACGAAAGGCATGAGCTTTCCCTTACGCAAAAGAAGCTTAAAAAATAAGGATATTTTATACCTAATTTATGATCAGGAGTTGGGTATAAGTTTTCCGAGCCGATTCGAATAACTGGTAAAGGAAAAGTAAAAGTTGCTGACACATTCCACATTACTATTGAAGAAAGCAACGATTCTACAGAAGACGAGCAAAGCAAAAGTCAAAGGAGTTCTGTTTTTTTATCACATCACCTCTTCTACTGCACTCCCTTCAGTTTTTCAGAGATTAAACACAACTTCGGTTACAAGAACGTCTGCCTTCAAAAGGTTAAGCGTGTCGACGACAAAGACTAG

mRNA sequence

ATGACGTCTAGAGGCAACACTTCTAAAGCTTTAAGCGACATCAGTAAAATGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGGATATGCCACTATTTGAGTTCGCAAATAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGAAATTATAATAAAAGAAAATTATGTGATTGATGAGCACAATTCATCCTCTAAACGCTCAAGTGAAGAGATGCCTCACCCAGATATAATGTCGGTTATGGTGACTGACGTGGATACAAGTGAAGATAGAATAGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCGTGATGCTGTTGAATCAAGTCACTCATATACCATCAAGAATAAGAACAAAGGGAAGGCAATTTTGCAAGAAAAGGCCTTACAAAATAATGACCTCCGAACTGTTTACTCCAAAGAAGAAGAAAAGCAGGTGAAGGATGCTGATGAGGGATGGACGCTAGTAACGCTTCGAAAGAAGCATAAGCAAAATTTTTCTAAAAAAGAATCTCATTCGTACCGAGAGTATAAAAGAAAGGGCACTTATAAGCCTGAGCAAAGAACGATCACAACAAAGAAGTCAAATGAAGTGGATGCACTCAATGGTCGAGAGAATGATGAACTAACGATCCAAGTTAAGTCTGAAGTGCCAACAAATGAAAGGATACCAATCCCTAAAGAAATAGCCTCAAAACCTCCCATTTTACGCTACATTCCACTGTCTCGACATAAGAAGGGAGAATCGCCATTTGCAGAAGGAGTTGGGTATAAGTTTTCCGAGCCGATTCGAATAACTGGTAAAGGAAAAGTAAAAGTTGCTGACACATTCCACATTACTATTGAAGAAAGCAACGATTCTACAGAAGACGAGCAAAGCAAAAGTCAAAGGAGTTCTGTTTTTTTATCACATCACCTCTTCTACTGCACTCCCTTCAGTTTTTCAGAGATTAAACACAACTTCGGTTACAAGAACGTCTGCCTTCAAAAGGTTAAGCGTGTCGACGACAAAGACTAG

Coding sequence (CDS)

ATGACGTCTAGAGGCAACACTTCTAAAGCTTTAAGCGACATCAGTAAAATGCCAAATACTCGCAGCCGCTCAAGGGAGGCTCAATCGTCTGAGGATATGCCACTATTTGAGTTCGCAAATAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGAAATTATAATAAAAGAAAATTATGTGATTGATGAGCACAATTCATCCTCTAAACGCTCAAGTGAAGAGATGCCTCACCCAGATATAATGTCGGTTATGGTGACTGACGTGGATACAAGTGAAGATAGAATAGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATCGAAAGTCGTGATGCTGTTGAATCAAGTCACTCATATACCATCAAGAATAAGAACAAAGGGAAGGCAATTTTGCAAGAAAAGGCCTTACAAAATAATGACCTCCGAACTGTTTACTCCAAAGAAGAAGAAAAGCAGGTGAAGGATGCTGATGAGGGATGGACGCTAGTAACGCTTCGAAAGAAGCATAAGCAAAATTTTTCTAAAAAAGAATCTCATTCGTACCGAGAGTATAAAAGAAAGGGCACTTATAAGCCTGAGCAAAGAACGATCACAACAAAGAAGTCAAATGAAGTGGATGCACTCAATGGTCGAGAGAATGATGAACTAACGATCCAAGTTAAGTCTGAAGTGCCAACAAATGAAAGGATACCAATCCCTAAAGAAATAGCCTCAAAACCTCCCATTTTACGCTACATTCCACTGTCTCGACATAAGAAGGGAGAATCGCCATTTGCAGAAGGAGTTGGGTATAAGTTTTCCGAGCCGATTCGAATAACTGGTAAAGGAAAAGTAAAAGTTGCTGACACATTCCACATTACTATTGAAGAAAGCAACGATTCTACAGAAGACGAGCAAAGCAAAAGTCAAAGGAGTTCTGTTTTTTTATCACATCACCTCTTCTACTGCACTCCCTTCAGTTTTTCAGAGATTAAACACAACTTCGGTTACAAGAACGTCTGCCTTCAAAAGGTTAAGCGTGTCGACGACAAAGACTAG

Protein sequence

MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENYVIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASLKNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQRTITTKKSNEVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYIPLSRHKKGESPFAEGVGYKFSEPIRITGKGKVKVADTFHITIEESNDSTEDEQSKSQRSSVFLSHHLFYCTPFSFSEIKHNFGYKNVCLQKVKRVDDKD

Homology

[Close]

BLAST of PI0022479 vs. ExPASy TrEMBL
Match: A0A5A7U9H0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001980 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.0e-59
Identity = 125/156 (80.13%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 1   MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
           MTS+GNTSKALSDI K PNTRSRSR+ QSSEDMP FE ANNIWEQ+SKPPKG I+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKWPNTRSRSRQIQSSEDMPPFEVANNIWEQISKPPKGGIVIKENP 60

Query: 61  VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
            IDEHNS S+RS+EE P P+IMSVMVTDVDTSEDR+AELEKKVNML+KAVEERD+EIASL
Sbjct: 61  AIDEHNSLSERSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASL 120

Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN 157
           KNHIESRDA+ESSH++ IKN NKGKAI+QE   QN+
Sbjct: 121 KNHIESRDAIESSHTHIIKNVNKGKAIMQESQPQNS 156

[Close]

BLAST of PI0022479 vs. ExPASy TrEMBL
Match: A0A5D3CSH0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00190 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.9e-58
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 1   MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
           MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
            IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELEKKVNML+K VEERDYEIA L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN 156
           KNHIESRDA ESSH +T+KN +KGKA++QE   QN
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155

[Close]

BLAST of PI0022479 vs. ExPASy TrEMBL
Match: A0A5A7T892 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001980 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.9e-58
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 1   MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
           MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
            IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELEKKVNML+K VEERDYEIA L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN 156
           KNHIESRDA ESSH +T+KN +KGKA++QE   QN
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155

[Close]

BLAST of PI0022479 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.6e-58
Identity = 123/156 (78.85%), Postives = 139/156 (89.10%), Query Frame = 0


Query: 1   MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
           MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
            +DEHNS S+RS+EE+P P+IMSVMVTDVDTSEDR+AELEKKVNML+KAVEERD+EIA L
Sbjct: 61  AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120

Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN 157
           KNHIESRDA ESSH++TIKN NKGKAI+QE   QN+
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNS 156

[Close]

BLAST of PI0022479 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.9e-19
Identity = 75/224 (33.48%), Postives = 94/224 (41.96%), Query Frame = 0


Query: 204  KGTYKPEQRTITTKKSNEVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYI 263
            KGT+K EQ  IT+KKS++ DALN ++N ELT + K   P  E+I   ++  S PP+LRYI
Sbjct: 897  KGTFKNEQEMITSKKSSKGDALNSQQNGELTTETKLRAPEAEKIATLQKEVSNPPVLRYI 956

Query: 264  PLSRHKKGESPFAE---------------------------------------------- 323
            PLSR KKGESPF E                                              
Sbjct: 957  PLSRRKKGESPFTECSKNLTVKNTEILKENFTAPLTKIEKGEAKKIEKKDLQAYLPERRT 1016

Query: 324  --------------------------------------------------------GVGY 326
                                                                    G+GY
Sbjct: 1017 VEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPELSPTQKKLQKQGYSIPNSRAGIGY 1076

HSP 2 Score: 65.5 bits (158), Expect = 5.3e-07
Identity = 48/107 (44.86%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 153 LQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQR 212
           LQNND R    KEEEKQV + +EGWTLVT RKK KQ+FS+KES +YR Y+ KG     QR
Sbjct: 552 LQNNDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKG---KSQR 611

Query: 213 TITTKKSNE----VDALNGRENDELTIQVKSEVPTNERIPIPKEIAS 256
             T K   +    ++   G       I +K   P N     P EI S
Sbjct: 612 RNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFPKN----FPMEIVS 651

HSP 3 Score: 234.6 bits (597), Expect = 6.6e-58
Identity = 124/166 (74.70%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 1   MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
           MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
            IDEHNS S+RS+EE+P P+IMS+MVTDVDTSEDR+AELEKKVNML+K VEERD+EIA L
Sbjct: 61  AIDEHNSLSERSNEEVPQPNIMSIMVTDVDTSEDRMAELEKKVNMLMKVVEERDFEIALL 120

Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEE 167
           KNHIESRDA ESSH++TIKN NKGKAI+QE   QN+     +S E+
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASFSMEK 166

[Close]

BLAST of PI0022479 vs. NCBI nr
Match: KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-58
Identity = 125/156 (80.13%), Postives = 140/156 (89.74%), Query Frame = 0


Query: 1   MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
           MTS+GNTSKALSDI K PNTRSRSR+ QSSEDMP FE ANNIWEQ+SKPPKG I+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKWPNTRSRSRQIQSSEDMPPFEVANNIWEQISKPPKGGIVIKENP 60

Query: 61  VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
            IDEHNS S+RS+EE P P+IMSVMVTDVDTSEDR+AELEKKVNML+KAVEERD+EIASL
Sbjct: 61  AIDEHNSLSERSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASL 120

Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN 157
           KNHIESRDA+ESSH++ IKN NKGKAI+QE   QN+
Sbjct: 121 KNHIESRDAIESSHTHIIKNVNKGKAIMQESQPQNS 156

[Close]

BLAST of PI0022479 vs. NCBI nr
Match: KAA0039098.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 8.0e-58
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 1   MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
           MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
            IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELEKKVNML+K VEERDYEIA L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN 156
           KNHIESRDA ESSH +T+KN +KGKA++QE   QN
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155

[Close]

BLAST of PI0022479 vs. NCBI nr
Match: TYK14887.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 8.0e-58
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 1   MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
           MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP FE A NIWEQ+SKPPKG I+IKEN+
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
            IDEH SSSK SSEEMPHP+IMSVMVT+VDTSE+R+AELEKKVNML+K VEERDYEIA L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQN 156
           KNHIESRDA ESSH +T+KN +KGKA++QE   QN
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQN 155

[Close]

BLAST of PI0022479 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-57
Identity = 123/156 (78.85%), Postives = 139/156 (89.10%), Query Frame = 0


Query: 1   MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
           MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
            +DEHNS S+RS+EE+P P+IMSVMVTDVDTSEDR+AELEKKVNML+KAVEERD+EIA L
Sbjct: 61  AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120

Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNN 157
           KNHIESRDA ESSH++TIKN NKGKAI+QE   QN+
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNS 156

[Close]

BLAST of PI0022479 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-18
Identity = 75/224 (33.48%), Postives = 94/224 (41.96%), Query Frame = 0


Query: 204  KGTYKPEQRTITTKKSNEVDALNGRENDELTIQVKSEVPTNERIPIPKEIASKPPILRYI 263
            KGT+K EQ  IT+KKS++ DALN ++N ELT + K   P  E+I   ++  S PP+LRYI
Sbjct: 897  KGTFKNEQEMITSKKSSKGDALNSQQNGELTTETKLRAPEAEKIATLQKEVSNPPVLRYI 956

Query: 264  PLSRHKKGESPFAE---------------------------------------------- 323
            PLSR KKGESPF E                                              
Sbjct: 957  PLSRRKKGESPFTECSKNLTVKNTEILKENFTAPLTKIEKGEAKKIEKKDLQAYLPERRT 1016

Query: 324  --------------------------------------------------------GVGY 326
                                                                    G+GY
Sbjct: 1017 VEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPELSPTQKKLQKQGYSIPNSRAGIGY 1076

HSP 2 Score: 65.5 bits (158), Expect = 1.1e-06
Identity = 48/107 (44.86%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 153 LQNNDLRTVYSKEEEKQVKDADEGWTLVTLRKKHKQNFSKKESHSYREYKRKGTYKPEQR 212
           LQNND R    KEEEKQV + +EGWTLVT RKK KQ+FS+KES +YR Y+ KG     QR
Sbjct: 552 LQNNDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKG---KSQR 611

Query: 213 TITTKKSNE----VDALNGRENDELTIQVKSEVPTNERIPIPKEIAS 256
             T K   +    ++   G       I +K   P N     P EI S
Sbjct: 612 RNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFPKN----FPMEIVS 651

HSP 3 Score: 234.6 bits (597), Expect = 1.4e-57
Identity = 124/166 (74.70%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 1   MTSRGNTSKALSDISKMPNTRSRSREAQSSEDMPLFEFANNIWEQLSKPPKGEIIIKENY 60
           MTS+GNTSKALSDI K PNTRSRSRE QSSEDMP F+ A NIWEQ+SKPPKG I+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIDEHNSSSKRSSEEMPHPDIMSVMVTDVDTSEDRIAELEKKVNMLLKAVEERDYEIASL 120
            IDEHNS S+RS+EE+P P+IMS+MVTDVDTSEDR+AELEKKVNML+K VEERD+EIA L
Sbjct: 61  AIDEHNSLSERSNEEVPQPNIMSIMVTDVDTSEDRMAELEKKVNMLMKVVEERDFEIALL 120

Query: 121 KNHIESRDAVESSHSYTIKNKNKGKAILQEKALQNNDLRTVYSKEE 167
           KNHIESRDA ESSH++TIKN NKGKAI+QE   QN+     +S E+
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASFSMEK 166

The following BLAST results are available for this feature:

BLAST of PI0022479 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9H0	6.0e-59	80.13	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CSH0	3.9e-58	79.35	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T892	3.9e-58	79.35	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TZU9	6.6e-58	78.85	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7TZU9	7.9e-19	33.48	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]

BLAST of PI0022479 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051994.1	1.2e-58	80.13	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp...	[more]
KAA0039098.1	8.0e-58	79.35	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14887.1	8.0e-58	79.35	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047477.1	1.4e-57	78.85	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0047477.1	1.6e-18	33.48	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]

BLAST of PI0022479 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022479.1	PI0022479.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity