PI0021508 (gene) Melon (PI 482460) v1

Overview


Name	PI0021508
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr07: 15854432 .. 15856459 (+)
RNA-Seq Expression	PI0021508
Synteny	PI0021508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCAATGCCCATTCCAGGCGGCCTGTGCAATCAGATGTCTTTGAATCGCATGATCACCTTCCATGCCCATAAAGAGATGAAAAGGCGGTCAAAGACATTGGGTGACACAGCGAGTGAAGGTGCGATGATAACTTGTAGAAATATAAGTTATTGCGGCCTTTTAGGTAGAATAATGAAGCTATAATGCAGTGGAAAAGAAGAAAACAACATTTATTAATAATTGAGAGATAAATTGTTTCGCAAAGGATAAAAGAGCCAAATTCCTGTTTTACGCGTTTTATTATATTTTTATGTAGGATTAAAGCGAAAATAAGAAGTGACCACGCGAAGACAGCATCAGGCGAGGAACCATGCAGATAACTAGTCGAGCTTTAACGCATGGCTAGGCAATCCTGAGCTCTAGACGACAAACTAGCCTGTGTGGATGTCAAAAAAGATGCCTGCGACAGTGTGGCAGTGGCAGATGAATTAATTGACTGCCAAGTGGTCTATCACATCACGCCTCGTCTATATATATGGTGGAACCTTCATAATTTGCAGCATGCAAAAATTAGAGAGCGAATCCCTTTCCTCCACTTCCCCTTCTCTGCCTTGGTAAGAACTAGTATAGAGAGTTTATCATTTCCTCTCAATGAATAGGCAAAAATCAGAGCCAAAGAGTATGAGAAATCATACTTCGCAGCATAACCCCTTTTCTTTGTATTCCACTTTATTATATTCAGAAACGGATTGTAATATAAACTACTTGGTCGCCAGACTTAGTATCTTATTTGTAATGATTATCTTTTCTTACTTTCATTCTCCTATTTCTTTACTTCCTCATAGCTATTAAATATGCATGAATGATGTAATTATAACTTATTGTGGAGAAATCGTAAGGTTTGCATTATGCGGTCCTGCTTAGCAGGCGACGAAGAGATATAGAGATATCATCTCATTGCCAAACTTATCCTTAGTACATGAGACATAAATGTTTAAGTGTGTGACGGAAGCACCGAGAGATTGCTCGCCTTAATTAAGGGTGGTGAAACATAAAGTAAAAACACGATTAGTTATAAATCATCCCTTAACTTTATGTATTTGGATCCTGAGAGGCGAGCAAGTATAGCGAAAGCACCGAAGGGTTGCTCGCCTTAAACTGAAGTTAATGAATGCTTTATAATACCTTTCACGTGATTATAGTTACATCATGTAATACATAATTCTTTCATTAAACATTGCCTAGAAATTAAGTCTGCATACTTCGCATGATCCACCCCCCATACTCATACTCGTCATCTAGTTCGCATCATAGTGTAAATAATTAAATACCACAAAATACTTGTAAATAATTAAATACATCATGTAAAGATTAGAACGCCTAATGAACCATTTAGCAAAACCAAAATCCCTGCATTCGACCCTGGCTTACCGAGGAAACCTCTTACTCTACTTATACTTGGTCGAGCCGAAGGAAAACTTGTACTTAACGAATCACCATTAGTAAGCATGCAACGCATAGACCTAGCTCTGCTCTTTTTAACGCATGATGCTCGCCTAGTTGCCTAAATTAGAACCTTAATACATATCTACAAAATGATTTTCAAGAAGCAAGTTTTTGGCGCCATTGCCGGAGATTTTGTGTTTATCTATTTGAGTTTAATCTGTGCGCTAATCTTGTGCAGAAGTTCAATTTCAGCTATATCGTGCGTTCAAACCCGAAGAGCGCGTGAACAAGTTTATGAGTGACGGTGAACAGCCGCAATTCGAGCTTGACCCTGAACTTGAGCGAACATTTCGGCGTAATCGGCGAAGAGCGAGGCAAAGACAAGCAAGAAGAATGGAAAATGATAATAATAGAAACGCCCCTCCGCCGCAAGCTGTCCAAGAACCAAATGCCGCCTACATAGCACATGACCAGGACATGCCAATTAGGTCATATGCGGCATCTAACCTCTACAACTTCAACCCAGGGATCGCCTACCCTGTGTTCGGCGAAAATGCAAGGTTTGAAATCAAGCATGTGATGCTACAAATGATTTAG

mRNA sequence

ATGAACTCAATGCCCATTCCAGGCGGCCTGTGCAATCAGATGTCTTTGAATCGCATGATCACCTTCCATGCCCATAAAGAGATGAAAAGGCGGTCAAAGACATTGGGTGACACAGCGAGTGAAGAAGTTCAATTTCAGCTATATCGTGCGTTCAAACCCGAAGAGCGCGTGAACAAGTTTATGAGTGACGGTGAACAGCCGCAATTCGAGCTTGACCCTGAACTTGAGCGAACATTTCGGCGTAATCGGCGAAGAGCGAGGCAAAGACAAGCAAGAAGAATGGAAAATGATAATAATAGAAACGCCCCTCCGCCGCAAGCTGTCCAAGAACCAAATGCCGCCTACATAGCACATGACCAGGACATGCCAATTAGGTCATATGCGGCATCTAACCTCTACAACTTCAACCCAGGGATCGCCTACCCTGTGTTCGGCGAAAATGCAAGGTTTGAAATCAAGCATGTGATGCTACAAATGATTTAG

Coding sequence (CDS)

ATGAACTCAATGCCCATTCCAGGCGGCCTGTGCAATCAGATGTCTTTGAATCGCATGATCACCTTCCATGCCCATAAAGAGATGAAAAGGCGGTCAAAGACATTGGGTGACACAGCGAGTGAAGAAGTTCAATTTCAGCTATATCGTGCGTTCAAACCCGAAGAGCGCGTGAACAAGTTTATGAGTGACGGTGAACAGCCGCAATTCGAGCTTGACCCTGAACTTGAGCGAACATTTCGGCGTAATCGGCGAAGAGCGAGGCAAAGACAAGCAAGAAGAATGGAAAATGATAATAATAGAAACGCCCCTCCGCCGCAAGCTGTCCAAGAACCAAATGCCGCCTACATAGCACATGACCAGGACATGCCAATTAGGTCATATGCGGCATCTAACCTCTACAACTTCAACCCAGGGATCGCCTACCCTGTGTTCGGCGAAAATGCAAGGTTTGAAATCAAGCATGTGATGCTACAAATGATTTAG

Protein sequence

MNSMPIPGGLCNQMSLNRMITFHAHKEMKRRSKTLGDTASEEVQFQLYRAFKPEERVNKFMSDGEQPQFELDPELERTFRRNRRRARQRQARRMENDNNRNAPPPQAVQEPNAAYIAHDQDMPIRSYAASNLYNFNPGIAYPVFGENARFEIKHVMLQMI

Homology

[Close]

BLAST of PI0021508 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.1e-20
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 61  MSDGEQPQFELDPELERTFRRNRRRARQRQARRMEN-DNNRNAPPPQAVQEPNAAYIAHD 120
           MS+GEQP+F +D E+ER F+RNRR+ ++RQ     N  NN+ AP  QA+Q  N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 121 QDMPIRSYAASNLYNFNPGIAYPVFGENARFEIKHVMLQMI 161
           +D PIRS  + NLY FNPGI YP FGEN RF+IK VML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0021508 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.1e-20
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 61  MSDGEQPQFELDPELERTFRRNRRRARQRQARRMEN-DNNRNAPPPQAVQEPNAAYIAHD 120
           MS+GEQP+F +D E+ER F+RNRR+ ++RQ     N  NN+ AP  QA+Q  N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 121 QDMPIRSYAASNLYNFNPGIAYPVFGENARFEIKHVMLQMI 161
           +D PIRS  + NLY FNPGI YP FGEN RF+IK VML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0021508 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.6e-14
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 94  MENDNNRNAPPPQAVQEPNAAYIAHDQDMPIRSYAASNLYNFNPGIAYPVFGENARFEIK 153
           M N NN+  P  QA Q  N  Y+A D+D PIRSYA+ NLY+FNPGIAYP F EN RFEIK
Sbjct: 1   MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 154 HVMLQMI 161
            VMLQ+I
Sbjct: 61  LVMLQII 67

[Close]

BLAST of PI0021508 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-13
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 98  NNRNAPPPQAVQEPNAAYIAHDQDMPIRSYAASNLYNFNPGIAYPVFGENARFEIKHVML 157
           NN+N P  Q  QE N AY+AHD D PI+SYA+ NLY+FNPGIAY  FGEN  FEIKH+ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 158 QM 160
            M
Sbjct: 62  YM 63

[Close]

BLAST of PI0021508 vs. ExPASy TrEMBL
Match: A0A5D3D4Y1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001280 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.7e-10
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 114 AYIAHDQDMPIRSYAASNLYNFNPGIAYPVFGENARFEIKHVMLQM 160
           AY+AHD D  IRSY +SN Y+FNPGIAYPV GE+ RFEIKHVM QM
Sbjct: 8   AYLAHDLDRLIRSYTSSNQYDFNPGIAYPVSGEDVRFEIKHVMPQM 53

[Close]

BLAST of PI0021508 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 8.6e-20
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 61  MSDGEQPQFELDPELERTFRRNRRRARQRQARRMEN-DNNRNAPPPQAVQEPNAAYIAHD 120
           MS+GEQP+F +D E+ER F+RNRR+ ++RQ     N  NN+ AP  QA+Q  N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 121 QDMPIRSYAASNLYNFNPGIAYPVFGENARFEIKHVMLQMI 161
           +D PIRS  + NLY FNPGI YP FGEN RF+IK VML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0021508 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 8.6e-20
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 61  MSDGEQPQFELDPELERTFRRNRRRARQRQARRMEN-DNNRNAPPPQAVQEPNAAYIAHD 120
           MS+GEQP+F +D E+ER F+RNRR+ ++RQ     N  NN+ AP  QA+Q  N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 121 QDMPIRSYAASNLYNFNPGIAYPVFGENARFEIKHVMLQMI 161
           +D PIRS  + NLY FNPGI YP FGEN RF+IK VML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0021508 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 5.4e-14
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 94  MENDNNRNAPPPQAVQEPNAAYIAHDQDMPIRSYAASNLYNFNPGIAYPVFGENARFEIK 153
           M N NN+  P  QA Q  N  Y+A D+D PIRSYA+ NLY+FNPGIAYP F EN RFEIK
Sbjct: 1   MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 154 HVMLQMI 161
            VMLQ+I
Sbjct: 61  LVMLQII 67

[Close]

BLAST of PI0021508 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-13
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 60  FMSDGEQPQFELDPELERTFRRNRRRARQRQARR-MENDNNRNAPPPQAVQ--------- 119
           +MS+G+ P F++DPE+ERTFRR  R+ +QR++ + +E + +     PQA Q         
Sbjct: 1   YMSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANA 60

Query: 120 ------EPNAAYIAHDQDMPIRSYAASNLYNFNPGIAYPVFGENARFEIKHVMLQMI 161
                 + N   +AHD++ P+R YA+ NLYNF PGI  P F  N RFE+K VMLQM+
Sbjct: 61  QEHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQML 117

[Close]

BLAST of PI0021508 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-13
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 98  NNRNAPPPQAVQEPNAAYIAHDQDMPIRSYAASNLYNFNPGIAYPVFGENARFEIKHVML 157
           NN+N P  Q  QE N AY+AHD D PI+SYA+ NLY+FNPGIAY  FGEN  FEIKH+ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 158 QM 160
            M
Sbjct: 62  YM 63

The following BLAST results are available for this feature:

BLAST of PI0021508 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CAB5	4.1e-20	55.45	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7UXZ2	4.1e-20	55.45	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7V2U7	2.6e-14	64.18	Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7UDN8	1.7e-13	66.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D4Y1	8.7e-10	73.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0021508 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08803.1	8.6e-20	55.45	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0060833.1	8.6e-20	55.45	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0062403.1	5.4e-14	64.18	putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK...	[more]
WP_217833177.1	2.7e-13	42.74	retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70...	[more]
KAA0051815.1	3.5e-13	66.13	hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142...	[more]

BLAST of PI0021508 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021508.1	PI0021508.1	mRNA