Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTR exon CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTTTCTCCTTTTCTCTCTCTCTTCGTATTAGGAAGCAAAGTATCCCACGCAAAA ATGAGGTCTATTCACTCATTCCGATCAAGAAGACAAGCCACCACCATTTCCAATCTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCCCTGTCTCCGCTACCGCCACCCGAACAACTCCGTCCGCTGCCATGAACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA ATCATATCATTTCCTTATTATTATTATCAGTAGGGTAAATTATAACAAATCATCTTCAACTTTCTTCTTTGTTTCAAAATTATCTCTATACTTTTAAAAGCTGCAATATTATCCTTAAACTATCATAAACAATTACAAAACTATTTTCGTGAGTAAATCTTTTTAGAAATTTCCAACAGAGAACTCAATGCATACTTAGAAAACTACGTGTGGCAATGACTTAAAACGATGTGGTGATTCATATTTTTATTCTTTATGTTATTTGCTACCCAATTTCAATATCTCAATTTCTCTCTAAATTCTTAATGATCTCTATTTCAAGAGTATTTCTGGAACGTTTATGAAAATTTAAGGATAATATTGCAAAATTTGAAAATATGGTGATATTCTTTTTAAACAAATGAAAAGGTTTAAGGGTATTTTTATAATTTAACCTTATAATTATTCTAAAATTAGGTTGCCTTATGCTTTATTATATTAATTTAAATTTGTATTCTATGCAAGCTCTCTCTTTCTTTATATTTTATATGTCTTTAATTTTTAGCTCTCCCCTCTTTCTTAGCCTTAGAGAAATTGTGTAGTTAAGTTTCTAATCATTGAGAGCCTACAATGGCCTAAAATGTTCTTTGGGGGAAAACAAAAGGAATCAAAAAGTCTTATATTTATGCAATTATTTATTATTATTCCATATGTAATTTAGTACCTTTTATTTTTACCTTTTCTTCATTTTCTCCTTGCTAATTATTGTTGAATGGAAAATATAAGATATATTATCCTTGCATAAGATTTTTATTTTTCAA mRNA sequence
TCTCTTTCTCCTTTTCTCTCTCTCTTCGTATTAGGAAGCAAAGTATCCCACGCAAAAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAAGCCACCACCATTTCCAATCTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCCCTGTCTCCGCTACCGCCACCCGAACAACTCCGTCCGCTGCCATGAACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGAATCATATCATTTCCTTATTATTATTATCAGTAGGGTAAATTATAACAAATCATCTTCAACTTTCTTCTTTGTTTCAAAATTATCTCTATACTTTTAAAAGCTGCAATATTATCCTTAAACTATCATAAACAATTACAAAACTATTTTCGTGAGTAAATCTTTTTAGAAATTTCCAACAGAGAACTCAATGCATACTTAGAAAACTACGTGTGGCAATGACTTAAAACGATGTGGTGATTCATATTTTTATTCTTTATGTTATTTGCTACCCAATTTCAATATCTCAATTTCTCTCTAAATTCTTAATGATCTCTATTTCAAGAGTATTTCTGGAACGTTTATGAAAATTTAAGGATAATATTGCAAAATTTGAAAATATGGTGATATTCTTTTTAAACAAATGAAAAGGTTTAAGGGTATTTTTATAATTTAACCTTATAATTATTCTAAAATTAGGTTGCCTTATGCTTTATTATATTAATTTAAATTTGTATTCTATGCAAGCTCTCTCTTTCTTTATATTTTATATGTCTTTAATTTTTAGCTCTCCCCTCTTTCTTAGCCTTAGAGAAATTGTGTAGTTAAGTTTCTAATCATTGAGAGCCTACAATGGCCTAAAATGTTCTTTGGGGGAAAACAAAAGGAATCAAAAAGTCTTATATTTATGCAATTATTTATTATTATTCCATATGTAATTTAGTACCTTTTATTTTTACCTTTTCTTCATTTTCTCCTTGCTAATTATTGTTGAATGGAAAATATAAGATATATTATCCTTGCATAAGATTTTTATTTTTCAA Coding sequence (CDS)
ATGAGGTCTATTCACTCATTCCGATCAAGAAGACAAGCCACCACCATTTCCAATCTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCCCTGTCTCCGCTACCGCCACCCGAACAACTCCGTCCGCTGCCATGAACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA Protein sequence
MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHTSSPVSATATRTTPSAAMNKRLRNLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Homology
BLAST of PI0021157 vs. ExPASy TrEMBL
Match:
A0A0A0LJ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)
HSP 1 Score: 182.6 bits (462), Expect = 8.5e-43
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0
Query: 1 MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHT-SSPVSATATRTTPSAAMNKRLRN 60 MRSIHSFRSRRQATTIS LKPSRRRR+KLLHLPKHT SS VSAT RTTPSAAM+KRLRN Sbjct: 1 MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60 Query: 61 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL Sbjct: 61 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104
BLAST of PI0021157 vs. ExPASy TrEMBL
Match:
A0A1R3KLV4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 36/103 (34.95%), Postives = 64/103 (62.14%), Query Frame = 0
Query: 1 MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHTSSPVSATATRTTPSAAMNKRLRNL 60 MRS S R RR+ ++ + R R++ L +LP + +S + T ++ ++L L Sbjct: 1 MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNSVSESLRT------SVERKLEEL 60 Query: 61 QRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104 QR++P +E N++ LFQ TADYI L+ K+++L++L++FYG+ Sbjct: 61 QRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96
BLAST of PI0021157 vs. NCBI nr
Match:
KAE8651649.1 (hypothetical protein Csa_021260, partial [Cucumis sativus])
HSP 1 Score: 182.6 bits (462), Expect = 1.8e-42
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0
Query: 1 MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHT-SSPVSATATRTTPSAAMNKRLRN 60 MRSIHSFRSRRQATTIS LKPSRRRR+KLLHLPKHT SS VSAT RTTPSAAM+KRLRN Sbjct: 59 MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118 Query: 61 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL Sbjct: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 162
BLAST of PI0021157 vs. NCBI nr
Match:
KAG6598843.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 162.5 bits (410), Expect = 1.9e-36
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 0
Query: 1 MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHT--SSPVSATATRTTPSAAMNKRLR 60 MRSIHSFR RRQAT+ +NLKP+RRRRLKL+HLPK+T SS +SA AT TTPS AM+KRLR Sbjct: 1 MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60 Query: 61 NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104 NLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL Sbjct: 61 NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
BLAST of PI0021157 vs. NCBI nr
Match:
OMP08066.1 (hypothetical protein COLO4_06805 [Corchorus olitorius])
HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 36/103 (34.95%), Postives = 64/103 (62.14%), Query Frame = 0
Query: 1 MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHTSSPVSATATRTTPSAAMNKRLRNL 60 MRS S R RR+ ++ + R R++ L +LP + +S + T ++ ++L L Sbjct: 1 MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNSVSESLRT------SVERKLEEL 60 Query: 61 QRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104 QR++P +E N++ LFQ TADYI L+ K+++L++L++FYG+ Sbjct: 61 QRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96
BLAST of PI0021157 vs. TAIR 10
Match:
AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )
HSP 1 Score: 40.8 bits (94), Expect = 7.7e-04
Identity = 23/75 (30.67%), Postives = 43/75 (57.33%), Query Frame = 0
Query: 23 RRRRLKLLHLPKHTSSPVSATATRTTPSAAMNKRLRNLQRLVPGHTHETNLNHLFQRTAD 82 RR+R + + K P + P A+++R++ L+ LVP L+ LF++TAD Sbjct: 18 RRQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTAD 77 Query: 83 YIHALQLKLNILKDL 98 YI AL++K+ +++ + Sbjct: 78 YILALEMKVKVMQTM 92
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0LJ57 8.5e-43 93.27 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1 [more]
A0A1R3KLV4 1.2e-04 34.95 Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1 [more]
Match Name E-value Identity Description
KAE8651649.1 1.8e-42 93.27 hypothetical protein Csa_021260, partial [Cucumis sativus] [more]
KAG6598843.1 1.9e-36 81.90 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia] [more]
OMP08066.1 2.5e-04 34.95 hypothetical protein COLO4_06805 [Corchorus olitorius] [more]
Match Name E-value Identity Description
AT2G47270.1 7.7e-04 30.67 sequence-specific DNA binding transcription factors;transcription regulators [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
T C T C T T T C T C C T T T T C T C T C T C T C T T C G T A T T A G G A A G C A A A G T A T C C C A C G C A A A A A T G A G G T C T A T T C A C T C A T T C C G A T C A A G A A G A C A A G C C A C C A C C A T T T C C A A T C T C A A A C C A T C A A G G A G A A G A A G G T T A A A G C T T C T T C A C C T C C C A A A A C A C A C C T C C T C C C C T G T C T C C G C T A C C G C C A C C C G A A C A A C T C C G T C C G C T G C C A T G A A C A A A A G G C T G A G A A A T C T T C A G A G G C T G G T C C C T G G C C A C A C C C A T G A A A C C A A C C T C A A C C A C T T G T T T C A A A G A A C T G C T G A T T A C A T C C A T G C T T T A C A A C T T A A G C T C A A C A T T C T C A A A G A T C T C A C T T C T T T C T A T G G C C T T T G A A T C A T A T C A T T T C C T T A T T A T T A T T A T C A G T A G G G T A A A T T A T A A C A A A T C A T C T T C A A C T T T C T T C T T T G T T T C A A A A T T A T C T C T A T A C T T T T A A A A G C T G C A A T A T T A T C C T T A A A C T A T C A T A A A C A A T T A C A A A A C T A T T T T C G T G A G T A A A T C T T T T T A G A A A T T T C C A A C A G A G A A C T C A A T G C A T A C T T A G A A A A C T A C G T G T G G C A A T G A C T T A A A A C G A T G T G G T G A T T C A T A T T T T T A T T C T T T A T G T T A T T T G C T A C C C A A T T T C A A T A T C T C A A T T T C T C T C T A A A T T C T T A A T G A T C T C T A T T T C A A G A G T A T T T C T G G A A C G T T T A T G A A A A T T T A A G G A T A A T A T T G C A A A A T T T G A A A A T A T G G T G A T A T T C T T T T T A A A C A A A T G A A A A G G T T T A A G G G T A T T T T T A T A A T T T A A C C T T A T A A T T A T T C T A A A A T T A G G T T G C C T T A T G C T T T A T T A T A T T A A T T T A A A T T T G T A T T C T A T G C A A G C T C T C T C T T T C T T T A T A T T T T A T A T G T C T T T A A T T T T T A G C T C T C C C C T C T T T C T T A G C C T T A G A G A A A T T G T G T A G T T A A G T T T C T A A T C A T T G A G A G C C T A C A A T G G C C T A A A A T G T T C T T T G G G G G A A A A C A A A A G G A A T C A A A A A G T C T T A T A T T T A T G C A A T T A T T T A T T A T T A T T C C A T A T G T A A T T T A G T A C C T T T T A T T T T T A C C T T T T C T T C A T T T T C T C C T T G C T A A T T A T T G T T G A A T G G A A A A T A T A A G A T A T A T T A T C C T T G C A T A A G A T T T T T A T T T T T C A A 100 200 300 400 500 600 700 800 900 1000 1100 Expect = 5.0E-5 / Score = 25.0 Score = Score = Score = Score = Expect = 2.37578E-14 / Score = 59.9436 Sequence G3DSA:4.10.280.10 SSF47459 mobidb-lite PTHR33124:SF9 PTHR33124 cd11444
IPR Term IPR Description Source Source Term Source Description Alignment
IPR036638 Helix-loop-helix DNA-binding domain superfamily GENE3D 4.10.280.10 coord: 30..89 e-value: 5.0E-5 score: 25.0
IPR036638 Helix-loop-helix DNA-binding domain superfamily SUPERFAMILY 47459 HLH, helix-loop-helix DNA-binding domain coord: 53..96
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..25
None No IPR available PANTHER PTHR33124:SF9 TRANSCRIPTION FACTOR coord: 12..101
IPR044660 Transcription factor IBH1-like PANTHER PTHR33124 TRANSCRIPTION FACTOR IBH1-LIKE 1 coord: 12..101
IPR044549 Transcription factor IBH1-like, bHLH domain CDD cd11444 bHLH_AtIBH1_like coord: 46..98 e-value: 2.37578E-14 score: 59.9436
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006355
regulation of transcription, DNA-templated
molecular_function
GO:0046983
protein dimerization activity