PI0021157 (gene) Melon (PI 482460) v1

Overview


Name	PI0021157
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	sequence-specific DNA binding transcription factors;transcription regulators
Location	chr05: 4741950 .. 4743118 (+)
RNA-Seq Expression	PI0021157
Synteny	PI0021157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTTTCTCCTTTTCTCTCTCTCTTCGTATTAGGAAGCAAAGTATCCCACGCAAAAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAAGCCACCACCATTTCCAATCTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCCCTGTCTCCGCTACCGCCACCCGAACAACTCCGTCCGCTGCCATGAACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGAATCATATCATTTCCTTATTATTATTATCAGTAGGGTAAATTATAACAAATCATCTTCAACTTTCTTCTTTGTTTCAAAATTATCTCTATACTTTTAAAAGCTGCAATATTATCCTTAAACTATCATAAACAATTACAAAACTATTTTCGTGAGTAAATCTTTTTAGAAATTTCCAACAGAGAACTCAATGCATACTTAGAAAACTACGTGTGGCAATGACTTAAAACGATGTGGTGATTCATATTTTTATTCTTTATGTTATTTGCTACCCAATTTCAATATCTCAATTTCTCTCTAAATTCTTAATGATCTCTATTTCAAGAGTATTTCTGGAACGTTTATGAAAATTTAAGGATAATATTGCAAAATTTGAAAATATGGTGATATTCTTTTTAAACAAATGAAAAGGTTTAAGGGTATTTTTATAATTTAACCTTATAATTATTCTAAAATTAGGTTGCCTTATGCTTTATTATATTAATTTAAATTTGTATTCTATGCAAGCTCTCTCTTTCTTTATATTTTATATGTCTTTAATTTTTAGCTCTCCCCTCTTTCTTAGCCTTAGAGAAATTGTGTAGTTAAGTTTCTAATCATTGAGAGCCTACAATGGCCTAAAATGTTCTTTGGGGGAAAACAAAAGGAATCAAAAAGTCTTATATTTATGCAATTATTTATTATTATTCCATATGTAATTTAGTACCTTTTATTTTTACCTTTTCTTCATTTTCTCCTTGCTAATTATTGTTGAATGGAAAATATAAGATATATTATCCTTGCATAAGATTTTTATTTTTCAA

mRNA sequence

TCTCTTTCTCCTTTTCTCTCTCTCTTCGTATTAGGAAGCAAAGTATCCCACGCAAAAATGAGGTCTATTCACTCATTCCGATCAAGAAGACAAGCCACCACCATTTCCAATCTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCCCTGTCTCCGCTACCGCCACCCGAACAACTCCGTCCGCTGCCATGAACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGAATCATATCATTTCCTTATTATTATTATCAGTAGGGTAAATTATAACAAATCATCTTCAACTTTCTTCTTTGTTTCAAAATTATCTCTATACTTTTAAAAGCTGCAATATTATCCTTAAACTATCATAAACAATTACAAAACTATTTTCGTGAGTAAATCTTTTTAGAAATTTCCAACAGAGAACTCAATGCATACTTAGAAAACTACGTGTGGCAATGACTTAAAACGATGTGGTGATTCATATTTTTATTCTTTATGTTATTTGCTACCCAATTTCAATATCTCAATTTCTCTCTAAATTCTTAATGATCTCTATTTCAAGAGTATTTCTGGAACGTTTATGAAAATTTAAGGATAATATTGCAAAATTTGAAAATATGGTGATATTCTTTTTAAACAAATGAAAAGGTTTAAGGGTATTTTTATAATTTAACCTTATAATTATTCTAAAATTAGGTTGCCTTATGCTTTATTATATTAATTTAAATTTGTATTCTATGCAAGCTCTCTCTTTCTTTATATTTTATATGTCTTTAATTTTTAGCTCTCCCCTCTTTCTTAGCCTTAGAGAAATTGTGTAGTTAAGTTTCTAATCATTGAGAGCCTACAATGGCCTAAAATGTTCTTTGGGGGAAAACAAAAGGAATCAAAAAGTCTTATATTTATGCAATTATTTATTATTATTCCATATGTAATTTAGTACCTTTTATTTTTACCTTTTCTTCATTTTCTCCTTGCTAATTATTGTTGAATGGAAAATATAAGATATATTATCCTTGCATAAGATTTTTATTTTTCAA

Coding sequence (CDS)

ATGAGGTCTATTCACTCATTCCGATCAAGAAGACAAGCCACCACCATTTCCAATCTCAAACCATCAAGGAGAAGAAGGTTAAAGCTTCTTCACCTCCCAAAACACACCTCCTCCCCTGTCTCCGCTACCGCCACCCGAACAACTCCGTCCGCTGCCATGAACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCTGATTACATCCATGCTTTACAACTTAAGCTCAACATTCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA

Protein sequence

MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHTSSPVSATATRTTPSAAMNKRLRNLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL

Homology

[Close]

BLAST of PI0021157 vs. ExPASy TrEMBL
Match: A0A0A0LJ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.5e-43
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHT-SSPVSATATRTTPSAAMNKRLRN 60
           MRSIHSFRSRRQATTIS LKPSRRRR+KLLHLPKHT SS VSAT  RTTPSAAM+KRLRN
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104
           LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Sbjct: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]

BLAST of PI0021157 vs. ExPASy TrEMBL
Match: A0A1R3KLV4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 36/103 (34.95%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHTSSPVSATATRTTPSAAMNKRLRNL 60
           MRS  S R RR+   ++  +  R R++ L +LP + +S   +  T      ++ ++L  L
Sbjct: 1   MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNSVSESLRT------SVERKLEEL 60

Query: 61  QRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104
           QR++P   +E N++ LFQ TADYI  L+ K+++L++L++FYG+
Sbjct: 61  QRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96

[Close]

BLAST of PI0021157 vs. NCBI nr
Match: KAE8651649.1 (hypothetical protein Csa_021260, partial [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 1.8e-42
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHT-SSPVSATATRTTPSAAMNKRLRN 60
           MRSIHSFRSRRQATTIS LKPSRRRR+KLLHLPKHT SS VSAT  RTTPSAAM+KRLRN
Sbjct: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118

Query: 61  LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104
           LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL
Sbjct: 119 LQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 162

[Close]

BLAST of PI0021157 vs. NCBI nr
Match: KAG6598843.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-36
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHT--SSPVSATATRTTPSAAMNKRLR 60
           MRSIHSFR RRQAT+ +NLKP+RRRRLKL+HLPK+T  SS +SA AT TTPS AM+KRLR
Sbjct: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60

Query: 61  NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104
           NLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61  NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105

[Close]

BLAST of PI0021157 vs. NCBI nr
Match: OMP08066.1 (hypothetical protein COLO4_06805 [Corchorus olitorius])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 36/103 (34.95%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISNLKPSRRRRLKLLHLPKHTSSPVSATATRTTPSAAMNKRLRNL 60
           MRS  S R RR+   ++  +  R R++ L +LP + +S   +  T      ++ ++L  L
Sbjct: 1   MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNSVSESLRT------SVERKLEEL 60

Query: 61  QRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104
           QR++P   +E N++ LFQ TADYI  L+ K+++L++L++FYG+
Sbjct: 61  QRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96

[Close]

BLAST of PI0021157 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 40.8 bits (94), Expect = 7.7e-04
Identity = 23/75 (30.67%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 23 RRRRLKLLHLPKHTSSPVSATATRTTPSAAMNKRLRNLQRLVPGHTHETNLNHLFQRTAD 82
          RR+R +   + K    P  +      P  A+++R++ L+ LVP       L+ LF++TAD
Sbjct: 18 RRQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTAD 77

Query: 83 YIHALQLKLNILKDL 98
          YI AL++K+ +++ +
Sbjct: 78 YILALEMKVKVMQTM 92

The following BLAST results are available for this feature:

BLAST of PI0021157 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ57	8.5e-43	93.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1	[more]
A0A1R3KLV4	1.2e-04	34.95	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1	[more]

BLAST of PI0021157 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651649.1	1.8e-42	93.27	hypothetical protein Csa_021260, partial [Cucumis sativus]	[more]
KAG6598843.1	1.9e-36	81.90	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
OMP08066.1	2.5e-04	34.95	hypothetical protein COLO4_06805 [Corchorus olitorius]	[more]

BLAST of PI0021157 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	7.7e-04	30.67	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 30..89 e-value: 5.0E-5 score: 25.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 53..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR33124:SF9	TRANSCRIPTION FACTOR	coord: 12..101
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 12..101
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 46..98 e-value: 2.37578E-14 score: 59.9436

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021157.1	PI0021157.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity