PI0021029 (gene) Melon (PI 482460) v1

Overview
NamePI0021029
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr06: 15795112 .. 15795306 (+)
RNA-Seq ExpressionPI0021029
SyntenyPI0021029
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATAATAATAATAGAAACGCCCCTTCGCCGCAAGCTGCCCAAGAACCAAATGCCGCCTACATGGCACATGACTTGGATAGGCCAATTAGGTCATATGCGGTGCCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCCGTGTTCGATGAAAATGCAAGGTTTGAAATCAAGCCTGTGATGCTATAA

mRNA sequence

ATGGAAAATAATAATAATAGAAACGCCCCTTCGCCGCAAGCTGCCCAAGAACCAAATGCCGCCTACATGGCACATGACTTGGATAGGCCAATTAGGTCATATGCGGTGCCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCCGTGTTCGATGAAAATGCAAGGTTTGAAATCAAGCCTGTGATGCTATAA

Coding sequence (CDS)

ATGGAAAATAATAATAATAGAAACGCCCCTTCGCCGCAAGCTGCCCAAGAACCAAATGCCGCCTACATGGCACATGACTTGGATAGGCCAATTAGGTCATATGCGGTGCCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCCGTGTTCGATGAAAATGCAAGGTTTGAAATCAAGCCTGTGATGCTATAA

Protein sequence

MENNNNRNAPSPQAAQEPNAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENARFEIKPVML
Homology
BLAST of PI0021029 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 1  MENNNNRNAPSPQAAQEPNAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENARFEIK 60
          M N NN+  P+ QAAQ  N  Y+A D DRPIRSYA PNLY+FNPGIAYP F EN RFEIK
Sbjct: 1  MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 61 PVML 65
           VML
Sbjct: 61 LVML 64

BLAST of PI0021029 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 5  NNRNAPSPQAAQEPNAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENARFEIKPVML 64
          NN+N P+ Q  QE N AY+AHDLD+PI+SYA PNLY+FNPGIAY  F EN  FEIK +ML
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

BLAST of PI0021029 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.7e-13
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 3  NNNNRNAPSPQAAQEPNAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENARFEIKPV 62
          + NN+ AP+ QA Q  N  Y+AH+ DRPIRS   PNLY FNPGI YP F EN RF+IKPV
Sbjct: 37 SQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPV 96

Query: 63 ML 65
          ML
Sbjct: 97 ML 98

BLAST of PI0021029 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.7e-13
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 3  NNNNRNAPSPQAAQEPNAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENARFEIKPV 62
          + NN+ AP+ QA Q  N  Y+AH+ DRPIRS   PNLY FNPGI YP F EN RF+IKPV
Sbjct: 37 SQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPV 96

Query: 63 ML 65
          ML
Sbjct: 97 ML 98

BLAST of PI0021029 vs. ExPASy TrEMBL
Match: A0A5A7U2F0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001090 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 1  MENNNNRNAPSPQAAQEPNAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENA 56
          +EN NN+   + Q AQE N  Y+AH +D+PIRSYA  NLY+FNP I YP F EN+
Sbjct: 10 IENQNNKGVATNQNAQEQNPTYLAHYMDKPIRSYASQNLYDFNPCITYPTFGENS 64

BLAST of PI0021029 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 1  MENNNNRNAPSPQAAQEPNAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENARFEIK 60
          M N NN+  P+ QAAQ  N  Y+A D DRPIRSYA PNLY+FNPGIAYP F EN RFEIK
Sbjct: 1  MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 61 PVML 65
           VML
Sbjct: 61 LVML 64

BLAST of PI0021029 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 5  NNRNAPSPQAAQEPNAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENARFEIKPVML 64
          NN+N P+ Q  QE N AY+AHDLD+PI+SYA PNLY+FNPGIAY  F EN  FEIK +ML
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

BLAST of PI0021029 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-12
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 3  NNNNRNAPSPQAAQEPNAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENARFEIKPV 62
          + NN+ AP+ QA Q  N  Y+AH+ DRPIRS   PNLY FNPGI YP F EN RF+IKPV
Sbjct: 37 SQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPV 96

Query: 63 ML 65
          ML
Sbjct: 97 ML 98

BLAST of PI0021029 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-12
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 3  NNNNRNAPSPQAAQEPNAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENARFEIKPV 62
          + NN+ AP+ QA Q  N  Y+AH+ DRPIRS   PNLY FNPGI YP F EN RF+IKPV
Sbjct: 37 SQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPV 96

Query: 63 ML 65
          ML
Sbjct: 97 ML 98

BLAST of PI0021029 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 2   ENNNNRNAPSPQAAQEP--NAAYMAHDLDRPIRSYAVPNLYNFNPGIAYPVFDENARFEI 61
           +NNNN      Q    P  +  ++A D + PIR+YA PNLY+F+PGI+ P+ +ENARFEI
Sbjct: 37  DNNNNEAPEGNQGVNRPVQDPVFLAADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEI 96

Query: 62  KPVML 65
           KPVM+
Sbjct: 97  KPVMV 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U72.1e-1568.75Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN81.1e-1366.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CAB59.7e-1362.90Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7UXZ29.7e-1362.90Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7U2F02.5e-0856.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0062403.14.3e-1568.75putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
KAA0051815.12.4e-1366.67hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
TYK08803.12.0e-1262.90Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0060833.12.0e-1262.90Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
XP_038887458.13.0e-0850.77uncharacterized protein LOC120077591 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0021029.1PI0021029.1mRNA