Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCTAAAATCAACCAGAGAGCGACGAGCAAAGCATCTACCAAAATTTCTTGTCATTCAAAATCGTTTATTGAAAGTATTTCATTCAGTGAACCGATAATAAGTGGGGAGGATGCTGAGAGAATCGATGAAAAGGGCTTAGAGGTAACTATATTTGCTTTGACTTTATAATTTTAACCTCTAAGATTAATTGTGCTTCACACTTTTTCCGTTTCTTTTTTTTTAGGGAAAACCATGTCACTTGGCTATAGGATTGGTTAATAATATTGTTGCAGTAGGCACAATATTTGTTGATGATGGAGCATGCCCTACCATTAAAGTAATGGTAGACATTGTTATTGGAGAAGATGTGGGGATACCAATTCCATTGAAGGTAAAGATTGAGACTTTAACTCAAGCAATTTGTAACTTTGTTACATGGCCTCGCGGACTTGTAGTTATCGATGAAGGTGGCAAAGTAAGTTTCTATTTGACTATTATGCACTTTGTTTTTAAATCTTTTTATGCATTTTATAATCTTGAAATTGGTTGTGGTAGGATGATCCAACACGTAAGAATGTTAAATATTCTACTGTACACACGAATGTCAATGGCACTATTAAGCTCTTGTACAACCATGCCAAAAAGTATATGAAGGAAGAAAACATGATTCTCATCAATTTAAACGAGCATATATTTGGAAAGGAGAAATTAGTTTATTTGCATCGTGATGACATACTTCAATATTGTGGTATGGTTGAATTTGGTTACATGTGTATACTCACGTACATCGCGTAAGTATATAACGTTTATTATTTCACTTGTATATAACATTTATTACTTCACTTTTATAGTTCACATTTCAATACTAATTTTGTTTTATGTAGGTATCTTTGGGATGAATTGGATAATGAGATAA
mRNA sequence
ATGCAATCTAAAATCAACCAGAGAGCGACGAGCAAAGCATCTACCAAAATTTCTTGTCATTCAAAATCGTTTATTGAAAGTATTTCATTCAGTGAACCGATAATAAGTGGGGAGGATGCTGAGAGAATCGATGAAAAGGGCTTAGAGGGAAAACCATGTCACTTGGCTATAGGATTGGTTAATAATATTGTTGCAGTAGGCACAATATTTGTTGATGATGGAGCATGCCCTACCATTAAAGTAATGGTAGACATTGTTATTGGAGAAGATGTGGGGATACCAATTCCATTGAAGGTAAAGATTGAGACTTTAACTCAAGCAATTTGTAACTTTGTTACATGGCCTCGCGGACTTGTAGTTATCGATGAAGGTGGCAAAGATGATCCAACACGTAAGAATGTTAAATATTCTACTGTACACACGAATGTCAATGGCACTATTAAGCTCTTGTACAACCATGCCAAAAAGTATATGAAGGAAGAAAACATGATTCTCATCAATTTAAACGAGCATATATTTGGAAAGGAGAAATTAGTTTATTTGCATCGTGATGACATACTTCAATATTGTGGTATCTTTGGGATGAATTGGATAATGAGATAA
Coding sequence (CDS)
ATGCAATCTAAAATCAACCAGAGAGCGACGAGCAAAGCATCTACCAAAATTTCTTGTCATTCAAAATCGTTTATTGAAAGTATTTCATTCAGTGAACCGATAATAAGTGGGGAGGATGCTGAGAGAATCGATGAAAAGGGCTTAGAGGGAAAACCATGTCACTTGGCTATAGGATTGGTTAATAATATTGTTGCAGTAGGCACAATATTTGTTGATGATGGAGCATGCCCTACCATTAAAGTAATGGTAGACATTGTTATTGGAGAAGATGTGGGGATACCAATTCCATTGAAGGTAAAGATTGAGACTTTAACTCAAGCAATTTGTAACTTTGTTACATGGCCTCGCGGACTTGTAGTTATCGATGAAGGTGGCAAAGATGATCCAACACGTAAGAATGTTAAATATTCTACTGTACACACGAATGTCAATGGCACTATTAAGCTCTTGTACAACCATGCCAAAAAGTATATGAAGGAAGAAAACATGATTCTCATCAATTTAAACGAGCATATATTTGGAAAGGAGAAATTAGTTTATTTGCATCGTGATGACATACTTCAATATTGTGGTATCTTTGGGATGAATTGGATAATGAGATAA
Protein sequence
MQSKINQRATSKASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLVNNIVAVGTIFVDDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVVIDEGGKDDPTRKNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVYLHRDDILQYCGIFGMNWIMR
Homology
BLAST of PI0019519 vs. ExPASy TrEMBL
Match:
A0A5A7VBU4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00320 PE=4 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 92/198 (46.46%), Postives = 126/198 (63.64%), Query Frame = 0
Query: 1 MQSKINQRATSKASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLV 60
M K + K+ K S HS+S IESI+ + D + KG+EG PC L+IG +
Sbjct: 1 MCQKEEDDSRCKSDKKRSNHSRSSIESINIDLDV----DEDTPTNKGVEGTPCQLSIGSI 60
Query: 61 NNIVAVGTIFVDDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVV 120
NNIVAV TI D+ CP +KV+VD+V GE++ IP P+K KIETL QA+ N + WPR LV
Sbjct: 61 NNIVAVATIVEDNIGCPNVKVLVDVVTGENLTIPNPVKGKIETLNQALGNIIEWPRRLVS 120
Query: 121 IDEGGKDDPTRKNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVY 180
++ TRK+V Y + +T+VNG IKLL HA MK+ +MI I +NE IFG +K VY
Sbjct: 121 TINDKQEHSTRKDVVYPSNYTDVNGIIKLLNRHAVNNMKDVDMIRIPMNELIFGSDKFVY 180
Query: 181 LHRDDILQYCGIFGMNWI 199
L R+D+L YCG+ + ++
Sbjct: 181 LAREDLLHYCGMVEIGYM 194
BLAST of PI0019519 vs. ExPASy TrEMBL
Match:
A0A5A7UVK8 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G002270 PE=3 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 6.1e-37
Identity = 89/187 (47.59%), Postives = 122/187 (65.24%), Query Frame = 0
Query: 12 KASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLVNNIVAVGTIFV 71
K+ K S HS+S I SI+ + D + KG+E PC L+IG +NNIVAV TI
Sbjct: 161 KSDKKRSNHSRSSIGSINIDLDV----DEDTPSNKGVEETPCQLSIGSINNIVAVATIVE 220
Query: 72 DDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVVIDEGGKDDPTR 131
D+ CP +KV+VD+V GE++ IP P+K KIETL QA+ N + WPR LV ++ TR
Sbjct: 221 DNIGCPNVKVLVDVVTGENLTIPNPVKGKIETLNQALGNIIEWPRRLVSTINNKQEGSTR 280
Query: 132 KNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVYLHRDDILQYCG 191
K+V YS+ +T+VNG IKLL HA MK+ +MI I +NE IFG +K VYL R+D+L YCG
Sbjct: 281 KDVVYSSNYTDVNGIIKLLNRHAVNNMKDVDMIRIPMNELIFGSDKFVYLAREDLLHYCG 340
Query: 192 IFGMNWI 199
+ + ++
Sbjct: 341 MLEIGYM 343
BLAST of PI0019519 vs. ExPASy TrEMBL
Match:
A0A5A7UJG0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00070 PE=3 SV=1)
HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 89/187 (47.59%), Postives = 122/187 (65.24%), Query Frame = 0
Query: 12 KASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLVNNIVAVGTIFV 71
K+ K S HS+S I SI+ I D + + KG+EG PC L+IG +NNIVAV TI
Sbjct: 1156 KSDKKRSNHSRSSIGSIN----IDLDADEDTLTNKGVEGTPCQLSIGSINNIVAVATIVE 1215
Query: 72 DDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVVIDEGGKDDPTR 131
D+ CP +KV+VD+V GE++ IP P+K KIETL QA+ N + WPR LV + TR
Sbjct: 1216 DNIGCPNVKVLVDVVTGENLTIPNPVKGKIETLNQALGNIIEWPRRLVSTINDKQKHSTR 1275
Query: 132 KNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVYLHRDDILQYCG 191
K+V Y + +T+VNG IKLL HA M++ +MI I +NE IFG +K VYL R+D+L YCG
Sbjct: 1276 KDVVYPSNYTDVNGIIKLLNRHAMNNMEDVDMIRIPMNELIFGSDKFVYLAREDLLHYCG 1335
Query: 192 IFGMNWI 199
+ + ++
Sbjct: 1336 MVEIGYM 1338
BLAST of PI0019519 vs. ExPASy TrEMBL
Match:
A0A5D3C2U9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00070 PE=3 SV=1)
HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36
Identity = 89/187 (47.59%), Postives = 122/187 (65.24%), Query Frame = 0
Query: 12 KASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLVNNIVAVGTIFV 71
K+ K S HS+S I SI+ I D + KG+EG PC L+IG +NNIVAV TI
Sbjct: 1148 KSDKKRSNHSRSSIGSIN----IDLDADEDTPTNKGVEGTPCQLSIGSINNIVAVATIVE 1207
Query: 72 DDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVVIDEGGKDDPTR 131
D+ CP +KV+VD+V GE++ IP P+K KIETL QA+ N + WPR LV ++ TR
Sbjct: 1208 DNIGCPNVKVLVDVVTGENLTIPNPVKGKIETLNQALGNIIEWPRRLVSTINDKQEHSTR 1267
Query: 132 KNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVYLHRDDILQYCG 191
K+V Y + +T+VNG IKLL HA M++ +MI I +NE IFG +K VYL R+D+L YCG
Sbjct: 1268 KDVVYPSNYTDVNGIIKLLNRHAMNNMEDVDMIRIPMNELIFGSDKFVYLAREDLLHYCG 1327
Query: 192 IFGMNWI 199
+ + ++
Sbjct: 1328 MVEIGYM 1330
BLAST of PI0019519 vs. ExPASy TrEMBL
Match:
A0A5A7V303 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00190 PE=3 SV=1)
HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36
Identity = 89/187 (47.59%), Postives = 122/187 (65.24%), Query Frame = 0
Query: 12 KASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLVNNIVAVGTIFV 71
K+ K S HS+S I SI+ I D + KG+EG PC L+IG +NNIVAV TI
Sbjct: 1129 KSDKKRSNHSRSSIGSIN----IDLDADEDTPTNKGVEGTPCQLSIGSINNIVAVATIVE 1188
Query: 72 DDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVVIDEGGKDDPTR 131
D+ CP +KV+VD+V GE++ IP P+K KIETL QA+ N + WPR LV ++ TR
Sbjct: 1189 DNIGCPNVKVLVDVVTGENLTIPNPVKGKIETLNQALGNIIEWPRRLVSTINDKQEHSTR 1248
Query: 132 KNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVYLHRDDILQYCG 191
K+V Y + +T+VNG IKLL HA M++ +MI I +NE IFG +K VYL R+D+L YCG
Sbjct: 1249 KDVVYPSNYTDVNGIIKLLNRHAMNNMEDVDMIRIPMNELIFGSDKFVYLAREDLLHYCG 1308
Query: 192 IFGMNWI 199
+ + ++
Sbjct: 1309 MVEIGYM 1311
BLAST of PI0019519 vs. NCBI nr
Match:
KAA0063906.1 (uncharacterized protein E6C27_scaffold616G00320 [Cucumis melo var. makuwa])
HSP 1 Score: 165.6 bits (418), Expect = 4.3e-37
Identity = 92/198 (46.46%), Postives = 126/198 (63.64%), Query Frame = 0
Query: 1 MQSKINQRATSKASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLV 60
M K + K+ K S HS+S IESI+ + D + KG+EG PC L+IG +
Sbjct: 1 MCQKEEDDSRCKSDKKRSNHSRSSIESINIDLDV----DEDTPTNKGVEGTPCQLSIGSI 60
Query: 61 NNIVAVGTIFVDDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVV 120
NNIVAV TI D+ CP +KV+VD+V GE++ IP P+K KIETL QA+ N + WPR LV
Sbjct: 61 NNIVAVATIVEDNIGCPNVKVLVDVVTGENLTIPNPVKGKIETLNQALGNIIEWPRRLVS 120
Query: 121 IDEGGKDDPTRKNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVY 180
++ TRK+V Y + +T+VNG IKLL HA MK+ +MI I +NE IFG +K VY
Sbjct: 121 TINDKQEHSTRKDVVYPSNYTDVNGIIKLLNRHAVNNMKDVDMIRIPMNELIFGSDKFVY 180
Query: 181 LHRDDILQYCGIFGMNWI 199
L R+D+L YCG+ + ++
Sbjct: 181 LAREDLLHYCGMVEIGYM 194
BLAST of PI0019519 vs. NCBI nr
Match:
KAA0059922.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])
HSP 1 Score: 164.1 bits (414), Expect = 1.3e-36
Identity = 89/187 (47.59%), Postives = 122/187 (65.24%), Query Frame = 0
Query: 12 KASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLVNNIVAVGTIFV 71
K+ K S HS+S I SI+ + D + KG+E PC L+IG +NNIVAV TI
Sbjct: 161 KSDKKRSNHSRSSIGSINIDLDV----DEDTPSNKGVEETPCQLSIGSINNIVAVATIVE 220
Query: 72 DDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVVIDEGGKDDPTR 131
D+ CP +KV+VD+V GE++ IP P+K KIETL QA+ N + WPR LV ++ TR
Sbjct: 221 DNIGCPNVKVLVDVVTGENLTIPNPVKGKIETLNQALGNIIEWPRRLVSTINNKQEGSTR 280
Query: 132 KNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVYLHRDDILQYCG 191
K+V YS+ +T+VNG IKLL HA MK+ +MI I +NE IFG +K VYL R+D+L YCG
Sbjct: 281 KDVVYSSNYTDVNGIIKLLNRHAVNNMKDVDMIRIPMNELIFGSDKFVYLAREDLLHYCG 340
Query: 192 IFGMNWI 199
+ + ++
Sbjct: 341 MLEIGYM 343
BLAST of PI0019519 vs. NCBI nr
Match:
KAA0054737.1 (transposase [Cucumis melo var. makuwa])
HSP 1 Score: 162.9 bits (411), Expect = 2.8e-36
Identity = 89/187 (47.59%), Postives = 122/187 (65.24%), Query Frame = 0
Query: 12 KASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLVNNIVAVGTIFV 71
K+ K S HS+S I SI+ I D + + KG+EG PC L+IG +NNIVAV TI
Sbjct: 1156 KSDKKRSNHSRSSIGSIN----IDLDADEDTLTNKGVEGTPCQLSIGSINNIVAVATIVE 1215
Query: 72 DDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVVIDEGGKDDPTR 131
D+ CP +KV+VD+V GE++ IP P+K KIETL QA+ N + WPR LV + TR
Sbjct: 1216 DNIGCPNVKVLVDVVTGENLTIPNPVKGKIETLNQALGNIIEWPRRLVSTINDKQKHSTR 1275
Query: 132 KNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVYLHRDDILQYCG 191
K+V Y + +T+VNG IKLL HA M++ +MI I +NE IFG +K VYL R+D+L YCG
Sbjct: 1276 KDVVYPSNYTDVNGIIKLLNRHAMNNMEDVDMIRIPMNELIFGSDKFVYLAREDLLHYCG 1335
Query: 192 IFGMNWI 199
+ + ++
Sbjct: 1336 MVEIGYM 1338
BLAST of PI0019519 vs. NCBI nr
Match:
TYK27996.1 (transposase [Cucumis melo var. makuwa])
HSP 1 Score: 162.2 bits (409), Expect = 4.8e-36
Identity = 89/187 (47.59%), Postives = 122/187 (65.24%), Query Frame = 0
Query: 12 KASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLVNNIVAVGTIFV 71
K+ K S HS+S I SI+ I D + KG+EG PC L+IG +NNIVAV TI
Sbjct: 552 KSDKKRSNHSRSSIGSIN----IDLDADEDTPTNKGVEGTPCQLSIGSINNIVAVATIVE 611
Query: 72 DDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVVIDEGGKDDPTR 131
D+ CP +KV+VD+V GE++ IP P+K KIETL QA+ N + WPR LV ++ TR
Sbjct: 612 DNIGCPNVKVLVDVVTGENLTIPNPVKGKIETLNQALGNIIEWPRRLVSTINDKQEHSTR 671
Query: 132 KNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVYLHRDDILQYCG 191
K+V Y + +T+VNG IKLL HA M++ +MI I +NE IFG +K VYL R+D+L YCG
Sbjct: 672 KDVVYPSNYTDVNGIIKLLNRHAMNNMEDVDMIRIPMNELIFGSDKFVYLAREDLLHYCG 731
Query: 192 IFGMNWI 199
+ + ++
Sbjct: 732 MVEIGYM 734
BLAST of PI0019519 vs. NCBI nr
Match:
TYJ96621.1 (transposase [Cucumis melo var. makuwa] >TYK06147.1 transposase [Cucumis melo var. makuwa] >TYK18178.1 transposase [Cucumis melo var. makuwa] >TYK31657.1 transposase [Cucumis melo var. makuwa])
HSP 1 Score: 162.2 bits (409), Expect = 4.8e-36
Identity = 89/187 (47.59%), Postives = 122/187 (65.24%), Query Frame = 0
Query: 12 KASTKISCHSKSFIESISFSEPIISGEDAERIDEKGLEGKPCHLAIGLVNNIVAVGTIFV 71
K+ K S HS+S I SI+ I D + KG+EG PC L+IG +NNIVAV TI
Sbjct: 1148 KSDKKRSNHSRSSIGSIN----IDLDADEDTPTNKGVEGTPCQLSIGSINNIVAVATIVE 1207
Query: 72 DDGACPTIKVMVDIVIGEDVGIPIPLKVKIETLTQAICNFVTWPRGLVVIDEGGKDDPTR 131
D+ CP +KV+VD+V GE++ IP P+K KIETL QA+ N + WPR LV ++ TR
Sbjct: 1208 DNIGCPNVKVLVDVVTGENLTIPNPVKGKIETLNQALGNIIEWPRRLVSTINDKQEHSTR 1267
Query: 132 KNVKYSTVHTNVNGTIKLLYNHAKKYMKEENMILINLNEHIFGKEKLVYLHRDDILQYCG 191
K+V Y + +T+VNG IKLL HA M++ +MI I +NE IFG +K VYL R+D+L YCG
Sbjct: 1268 KDVVYPSNYTDVNGIIKLLNRHAMNNMEDVDMIRIPMNELIFGSDKFVYLAREDLLHYCG 1327
Query: 192 IFGMNWI 199
+ + ++
Sbjct: 1328 MVEIGYM 1330
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VBU4 | 2.1e-37 | 46.46 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UVK8 | 6.1e-37 | 47.59 | 40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
| A0A5A7UJG0 | 1.4e-36 | 47.59 | Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00070 PE... | [more] |
| A0A5D3C2U9 | 2.3e-36 | 47.59 | Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00070 PE... | [more] |
| A0A5A7V303 | 2.3e-36 | 47.59 | Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00190 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0063906.1 | 4.3e-37 | 46.46 | uncharacterized protein E6C27_scaffold616G00320 [Cucumis melo var. makuwa] | [more] |
| KAA0059922.1 | 1.3e-36 | 47.59 | 40S ribosomal protein S13-like [Cucumis melo var. makuwa] | [more] |
| KAA0054737.1 | 2.8e-36 | 47.59 | transposase [Cucumis melo var. makuwa] | [more] |
| TYK27996.1 | 4.8e-36 | 47.59 | transposase [Cucumis melo var. makuwa] | [more] |
| TYJ96621.1 | 4.8e-36 | 47.59 | transposase [Cucumis melo var. makuwa] >TYK06147.1 transposase [Cucumis melo var... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
