PI0019510 (gene) Melon (PI 482460) v1

Overview


Name	PI0019510
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	60S acidic ribosomal protein P1
Location	chr09: 58650 .. 59260 (+)
RNA-Seq Expression	PI0019510
Synteny	PI0019510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCAGTGAACTCGCTTGCACCTACGCCGCCTTGATTCTTCATGACGACGCCATCTCCATCACTATACCCTAATTTTAAACCATTTTCATTTTTCCCTCTCTTAATTTGATTTTTTTATTCTAACTCATCTCTTCTTTCTTTCTTTCAATTTTAGGCCGAGAAGATTTCCACATTGGTGAACGTTGCCCGCATTACCGTCGAATCATACTGGCCCTCTCTTTTCGCTAAGTTGGCCGTCGATAGGAACATCAATGATCTCATTCTCAACCTCGGATCTGCTGCTGCTTCCACCGCTGCGGCTTCTCATTCACTCTCCATCGCATCTTCTGCCGGTAATGCCGCTGTTGCCGCTCCTGCTCTCGTCGAAAAGAAGGTATACGCCGGTTTTTTCATACTAATTTCGCAGTTATTTATATATATAAGTATATGTGATTTAAACGCTGCAATTAGCAATTGAGCCTCGTTTTTACTGGAGCATATATATATTGATTCATTACTTATATAATTATTGGTAGTTATATATGGTTGTATTGTATCAGTATCATATGCAGGAAGAGGTCATGGAAGACAGCGAGGATGACATGGTCTTCGGCTTGTTTGATTAG

mRNA sequence

ATGTCAACCAGTGAACTCGCTTGCACCTACGCCGCCTTGATTCTTCATGACGACGCCGAGAAGATTTCCACATTGGTGAACGTTGCCCGCATTACCGTCGAATCATACTGGCCCTCTCTTTTCGCTAAGTTGGCCGTCGATAGGAACATCAATGATCTCATTCTCAACCTCGGATCTGCTGCTGCTTCCACCGCTGCGGCTTCTCATTCACTCTCCATCGCATCTTCTGCCGGTAATGCCGCTGTTGCCGCTCCTGCTCTCGTCGAAAAGAAGGAAGAGGTCATGGAAGACAGCGAGGATGACATGGTCTTCGGCTTGTTTGATTAG

Coding sequence (CDS)

ATGTCAACCAGTGAACTCGCTTGCACCTACGCCGCCTTGATTCTTCATGACGACGCCGAGAAGATTTCCACATTGGTGAACGTTGCCCGCATTACCGTCGAATCATACTGGCCCTCTCTTTTCGCTAAGTTGGCCGTCGATAGGAACATCAATGATCTCATTCTCAACCTCGGATCTGCTGCTGCTTCCACCGCTGCGGCTTCTCATTCACTCTCCATCGCATCTTCTGCCGGTAATGCCGCTGTTGCCGCTCCTGCTCTCGTCGAAAAGAAGGAAGAGGTCATGGAAGACAGCGAGGATGACATGGTCTTCGGCTTGTTTGATTAG

Protein sequence

MSTSELACTYAALILHDDAEKISTLVNVARITVESYWPSLFAKLAVDRNINDLILNLGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD

Homology

[Close]

BLAST of PI0019510 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.9e-22
Identity = 63/113 (55.75%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MSTSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLIL 60
           M++ ELAC YAALIL DD     AEKI+T+V  A I VESYWP+LFAKL   RN+ DLIL
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NLGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           ++GS   +   A    + A + G AA AAPA+ EKKEE  E+S+DDM F LFD
Sbjct: 61  SVGSGGGAAPVA----AAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of PI0019510 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 5.1e-19
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   MST-SELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLI 60
           MST  ELAC+YA +IL D+     ++KI+TLV  A + +ESYWP LFAK+A  RN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           +N+G A      A  S +  ++AG AA AAPA  EKK+E  E+S+ D+ FGLFD
Sbjct: 61  MNVG-AGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of PI0019510 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 5.6e-18
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MST-SELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLI 60
           MST  ELAC+YA +IL D+     A+KI+TLV  A +T+ESYWP LFAK+A  RN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAASTAAASHSLSIASSAGNAAVAAPALVE-KKEEVMEDSEDDMVFGLFD 109
           +N+G  A     A  + +  ++ G AA AAPA  E KK+E  E+S+ D+ FGLFD
Sbjct: 61  MNVG--AGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of PI0019510 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 9.6e-18
Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MST-SELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLI 60
           MST  ELAC+YA +IL D+     A+KI+TLV  A +++ESYWP LFAK+A  RN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAASTAAASHSLSIASSAGNAAVAAPALVE-KKEEVMEDSEDDMVFGLFD 109
           +N+G+     A  +   + A +AG  A AAPA  E KK+E  E+S+ D+ FGLFD
Sbjct: 61  MNVGAGGGGGAPVA---AAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of PI0019510 vs. ExPASy Swiss-Prot
Match: P18660 (60S acidic ribosomal protein P1 OS=Gallus gallus OX=9031 GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-16
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 2   STSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLILN 61
           S SELAC Y+ALILHDD      +KI+ L+  A + VE +WP LFAK   + +I  LI N
Sbjct: 3   SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANIDIGSLICN 62

Query: 62  LGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           +G+   + AAA+ +   A + G AA A     E+K+E  E+S+DDM FGLFD
Sbjct: 63  VGAGGGAPAAAAPAGGAAPAGGGAAPAEEKKEEEKKEESEESDDDMGFGLFD 114

[Close]

BLAST of PI0019510 vs. ExPASy TrEMBL
Match: A0A6J1C9A3 (60S acidic ribosomal protein P1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009401 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.9e-27
Identity = 78/113 (69.03%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MSTSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLIL 60
           MSTSELACTYAALILHDD     AEKI+TLV  A +TVESYWPSLFAKL+  RNI+DLIL
Sbjct: 1   MSTSELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLIL 60

Query: 61  NLGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           N+GSAAAS A  S + S ++ A  A   APA VEKKEE +E+SEDD+VFGLFD
Sbjct: 61  NVGSAAAS-APLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFGLFD 112

[Close]

BLAST of PI0019510 vs. ExPASy TrEMBL
Match: A0A6J1CC92 (60S acidic ribosomal protein P1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009401 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.4e-25
Identity = 74/109 (67.89%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 5   ELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLILNLGS 64
           ELACTYAALILHDD     AEKI+TLV  A +TVESYWPSLFAKL+  RNI+DLILN+GS
Sbjct: 33  ELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS 92

Query: 65  AAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           AAAS A  S + S ++ A  A   APA VEKKEE +E+SEDD+VFGLFD
Sbjct: 93  AAAS-APLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFGLFD 140

[Close]

BLAST of PI0019510 vs. ExPASy TrEMBL
Match: W9RA28 (60S acidic ribosomal protein P1-1 OS=Morus notabilis OX=981085 GN=L484_003256 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 74/115 (64.35%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MSTSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLIL 60
           MSTSELACTYAALILHDD     A+KI+T+V  A+++VESYWPSLFAKLA  RN++DLIL
Sbjct: 1   MSTSELACTYAALILHDDGIPITADKIATVVKSAKLSVESYWPSLFAKLAEKRNLDDLIL 60

Query: 61  NLGS--AAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           N GS   AA  A  SHS    S AG AA AA A+ EKKEE  E+S+DDM F LFD
Sbjct: 61  NAGSGGCAAPAAVPSHS----SGAGAAAPAAAAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of PI0019510 vs. ExPASy TrEMBL
Match: A0A061G3F9 (60S acidic ribosomal protein family, putative OS=Theobroma cacao OX=3641 GN=TCM_015505 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.9e-23
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MSTSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLIL 60
           M+TSELAC+YAALILHDD     AEKI TLV  A++ VESYWPSLF KL   RNI+D+I+
Sbjct: 1   MATSELACSYAALILHDDRIPITAEKIVTLVKTAKVPVESYWPSLFTKLLAKRNIDDIIM 60

Query: 61  NLGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           N+GS       A+ + S+ + AG AA + PA+ EKKEE  E+++DD+ FGLFD
Sbjct: 61  NVGSGGDGAPVAAAAASVGTGAGAAAASTPAVEEKKEEDKEETDDDIGFGLFD 113

[Close]

BLAST of PI0019510 vs. ExPASy TrEMBL
Match: A0A6I9SZL2 (60S acidic ribosomal protein P1 OS=Sesamum indicum OX=4182 GN=LOC105160274 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.9e-23
Identity = 72/120 (60.00%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MSTSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLIL 60
           MS  ELACTYAALILHDD     AEKI+TLV  A +TVESYWPSLFAKL   RNI+DLI+
Sbjct: 1   MSFGELACTYAALILHDDGIPITAEKIATLVKAANVTVESYWPSLFAKLCEKRNIDDLIM 60

Query: 61  NLGS--AAASTAAASHSLSIASSAGN-----AAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           N+GS    A+ A A+ + ++A+ AG      AA AAPA  EKKEE  E+S+DDM F LFD
Sbjct: 61  NVGSGGGGAAVAVAAPACAVAAPAGGFLGGAAAAAAPAAEEKKEEPKEESDDDMGFSLFD 120

[Close]

BLAST of PI0019510 vs. NCBI nr
Match: XP_022138164.1 (60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 78/113 (69.03%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MSTSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLIL 60
           MSTSELACTYAALILHDD     AEKI+TLV  A +TVESYWPSLFAKL+  RNI+DLIL
Sbjct: 1   MSTSELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLIL 60

Query: 61  NLGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           N+GSAAAS A  S + S ++ A  A   APA VEKKEE +E+SEDD+VFGLFD
Sbjct: 61  NVGSAAAS-APLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFGLFD 112

[Close]

BLAST of PI0019510 vs. NCBI nr
Match: XP_022138163.1 (60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-24
Identity = 74/109 (67.89%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 5   ELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLILNLGS 64
           ELACTYAALILHDD     AEKI+TLV  A +TVESYWPSLFAKL+  RNI+DLILN+GS
Sbjct: 33  ELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS 92

Query: 65  AAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           AAAS A  S + S ++ A  A   APA VEKKEE +E+SEDD+VFGLFD
Sbjct: 93  AAAS-APLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFGLFD 140

[Close]

BLAST of PI0019510 vs. NCBI nr
Match: XP_010099432.1 (60S acidic ribosomal protein P1 [Morus notabilis] >EXB78394.1 60S acidic ribosomal protein P1-1 [Morus notabilis])

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-23
Identity = 74/115 (64.35%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MSTSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLIL 60
           MSTSELACTYAALILHDD     A+KI+T+V  A+++VESYWPSLFAKLA  RN++DLIL
Sbjct: 1   MSTSELACTYAALILHDDGIPITADKIATVVKSAKLSVESYWPSLFAKLAEKRNLDDLIL 60

Query: 61  NLGS--AAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           N GS   AA  A  SHS    S AG AA AA A+ EKKEE  E+S+DDM F LFD
Sbjct: 61  NAGSGGCAAPAAVPSHS----SGAGAAAPAAAAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of PI0019510 vs. NCBI nr
Match: EOY23697.1 (60S acidic ribosomal protein family, putative [Theobroma cacao])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 1   MSTSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLIL 60
           M+TSELAC+YAALILHDD     AEKI TLV  A++ VESYWPSLF KL   RNI+D+I+
Sbjct: 1   MATSELACSYAALILHDDRIPITAEKIVTLVKTAKVPVESYWPSLFTKLLAKRNIDDIIM 60

Query: 61  NLGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           N+GS       A+ + S+ + AG AA + PA+ EKKEE  E+++DD+ FGLFD
Sbjct: 61  NVGSGGDGAPVAAAAASVGTGAGAAAASTPAVEEKKEEDKEETDDDIGFGLFD 113

[Close]

BLAST of PI0019510 vs. NCBI nr
Match: XP_011075889.1 (60S acidic ribosomal protein P1 [Sesamum indicum])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 72/120 (60.00%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MSTSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLIL 60
           MS  ELACTYAALILHDD     AEKI+TLV  A +TVESYWPSLFAKL   RNI+DLI+
Sbjct: 1   MSFGELACTYAALILHDDGIPITAEKIATLVKAANVTVESYWPSLFAKLCEKRNIDDLIM 60

Query: 61  NLGS--AAASTAAASHSLSIASSAGN-----AAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           N+GS    A+ A A+ + ++A+ AG      AA AAPA  EKKEE  E+S+DDM F LFD
Sbjct: 61  NVGSGGGGAAVAVAAPACAVAAPAGGFLGGAAAAAAPAAEEKKEEPKEESDDDMGFSLFD 120

[Close]

BLAST of PI0019510 vs. TAIR 10
Match: AT5G24510.1 (60S acidic ribosomal protein family )

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-21
Identity = 62/116 (53.45%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MSTSELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLIL 60
           MSTSELACTYAALILHDD     AE IS LV  A + VESYWPSLFAKL   +NI+DLI+
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61  NLGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEE---VMEDSEDDMVFGLFD 109
           N+G+     A     ++ A+   + +V+ P   EKK E   + E+SEDDM+ GLFD
Sbjct: 61  NVGAGGCGVA---RPVTTAAPTASQSVSIPE--EKKNEMEVIKEESEDDMIIGLFD 111

[Close]

BLAST of PI0019510 vs. TAIR 10
Match: AT4G00810.1 (60S acidic ribosomal protein family )

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-20
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   MST-SELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLI 60
           MST  ELAC+YA +IL D+     ++KI+TLV  A + +ESYWP LFAK+A  RN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           +N+G A      A  S +  ++AG AA AAPA  EKK+E  E+S+ D+ FGLFD
Sbjct: 61  MNVG-AGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of PI0019510 vs. TAIR 10
Match: AT4G00810.2 (60S acidic ribosomal protein family )

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-20
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   MST-SELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLI 60
           MST  ELAC+YA +IL D+     ++KI+TLV  A + +ESYWP LFAK+A  RN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAASTAAASHSLSIASSAGNAAVAAPALVEKKEEVMEDSEDDMVFGLFD 109
           +N+G A      A  S +  ++AG AA AAPA  EKK+E  E+S+ D+ FGLFD
Sbjct: 61  MNVG-AGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of PI0019510 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-19
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MST-SELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLI 60
           MST  ELAC+YA +IL D+     A+KI+TLV  A +T+ESYWP LFAK+A  RN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAASTAAASHSLSIASSAGNAAVAAPALVE-KKEEVMEDSEDDMVFGLFD 109
           +N+G  A     A  + +  ++ G AA AAPA  E KK+E  E+S+ D+ FGLFD
Sbjct: 61  MNVG--AGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of PI0019510 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-19
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MST-SELACTYAALILHDD-----AEKISTLVNVARITVESYWPSLFAKLAVDRNINDLI 60
           MST  ELAC+YA +IL D+     A+KI+TLV  A +T+ESYWP LFAK+A  RN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAASTAAASHSLSIASSAGNAAVAAPALVE-KKEEVMEDSEDDMVFGLFD 109
           +N+G  A     A  + +  ++ G AA AAPA  E KK+E  E+S+ D+ FGLFD
Sbjct: 61  MNVG--AGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

The following BLAST results are available for this feature:

BLAST of PI0019510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	4.9e-22	55.75	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
O23095	5.1e-19	50.88	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
Q8LEQ0	5.6e-18	50.43	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
Q8LCW9	9.6e-18	49.57	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
P18660	1.8e-16	46.43	60S acidic ribosomal protein P1 OS=Gallus gallus OX=9031 GN=RPLP1 PE=3 SV=1	[more]

BLAST of PI0019510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C9A3	6.9e-27	69.03	60S acidic ribosomal protein P1-like isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CC92	8.4e-25	67.89	60S acidic ribosomal protein P1-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
W9RA28	1.6e-23	64.35	60S acidic ribosomal protein P1-1 OS=Morus notabilis OX=981085 GN=L484_003256 PE...	[more]
A0A061G3F9	7.9e-23	56.64	60S acidic ribosomal protein family, putative OS=Theobroma cacao OX=3641 GN=TCM_...	[more]
A0A6I9SZL2	7.9e-23	60.00	60S acidic ribosomal protein P1 OS=Sesamum indicum OX=4182 GN=LOC105160274 PE=3 ...	[more]

BLAST of PI0019510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138164.1	1.4e-26	69.03	60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia]	[more]
XP_022138163.1	1.7e-24	67.89	60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia]	[more]
XP_010099432.1	3.3e-23	64.35	60S acidic ribosomal protein P1 [Morus notabilis] >EXB78394.1 60S acidic ribosom...	[more]
EOY23697.1	1.6e-22	56.64	60S acidic ribosomal protein family, putative [Theobroma cacao]	[more]
XP_011075889.1	1.6e-22	60.00	60S acidic ribosomal protein P1 [Sesamum indicum]	[more]

BLAST of PI0019510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24510.1	1.5e-21	53.45	60S acidic ribosomal protein family	[more]
AT4G00810.1	3.6e-20	50.88	60S acidic ribosomal protein family	[more]
AT4G00810.2	3.6e-20	50.88	60S acidic ribosomal protein family	[more]
AT5G47700.1	4.0e-19	50.43	60S acidic ribosomal protein family	[more]
AT5G47700.2	4.0e-19	50.43	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..58 e-value: 8.1E-23 score: 82.0
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 19..107 e-value: 3.6E-15 score: 56.3
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 1..108
None	No IPR available	PANTHER	PTHR45696:SF20	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 1..108
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 5..107 e-value: 1.39641E-25 score: 90.0735

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0019510.1	PI0019510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0030295	protein kinase activator activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0003735	structural constituent of ribosome