Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGAGTGGGAGCATAAAAACCTCTACAACAGAGCCCTCCCAATACGCTTCACACAAAATCACCATTTTTCTCTCTTCTTCTTCCCTCCCCCATGGCCAGACTTTTTCCAACCATTTCAAATCTCTCTCATCATCGCCATCTTCTATTTTCCTCAACATGTTTCTCATTTCTCATCCTTTCTATCCCAATCCTCTCCATCTTCGCTCTCCTGATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCACAGCAGCACAAGAATTTCGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCGAAGATGATTTCGTGGAGAAAAGTGGAAGCAGCCATCGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAGAGGACCAGGAGGTTGTGATTTGAGTGATGAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGGTGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATTTGTTGTGTGATTCAAATAGGGATTTCAAATAATCTGATTCTTCTTTTTCTCCTGCGCTCTTTCTTCTTCCATTTTCCTTTGTTTACATTCATGAAACTTCCTTCACTCTCAATCATTTTTTTTATTTTATAATTTTTTTAAAAGAG
mRNA sequence
ATTGAGTGGGAGCATAAAAACCTCTACAACAGAGCCCTCCCAATACGCTTCACACAAAATCACCATTTTTCTCTCTTCTTCTTCCCTCCCCCATGGCCAGACTTTTTCCAACCATTTCAAATCTCTCTCATCATCGCCATCTTCTATTTTCCTCAACATGTTTCTCATTTCTCATCCTTTCTATCCCAATCCTCTCCATCTTCGCTCTCCTGATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCACAGCAGCACAAGAATTTCGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCGAAGATGATTTCGTGGAGAAAAGTGGAAGCAGCCATCGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAGAGGACCAGGAGGTTGTGATTTGAGTGATGAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGGTGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATTTGTTGTGTGATTCAAATAGGGATTTCAAATAATCTGATTCTTCTTTTTCTCCTGCGCTCTTTCTTCTTCCATTTTCCTTTGTTTACATTCATGAAACTTCCTTCACTCTCAATCATTTTTTTTATTTTATAATTTTTTTAAAAGAG
Coding sequence (CDS)
ATGGCCAGACTTTTTCCAACCATTTCAAATCTCTCTCATCATCGCCATCTTCTATTTTCCTCAACATGTTTCTCATTTCTCATCCTTTCTATCCCAATCCTCTCCATCTTCGCTCTCCTGATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCACAGCAGCACAAGAATTTCGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCGAAGATGATTTCGTGGAGAAAAGTGGAAGCAGCCATCGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAGAGGACCAGGAGGTTGTGATTTGAGTGATGAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGGTGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATTTGTTGTGTGATTCAAATAGGGATTTCAAATAA
Protein sequence
MARLFPTISNLSHHRHLLFSSTCFSFLILSIPILSIFALLIFLCTSSRKSNKSQQHKNFVSKMNSNISSRAISMAKMISWRKVEAAIEEEEEEEEEEKRGPGGCDLSDEDEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Homology
BLAST of PI0018762 vs. ExPASy TrEMBL
Match:
A0A0A0L7R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1)
HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 135/154 (87.66%), Postives = 137/154 (88.96%), Query Frame = 0
Query: 1 MARLFPTISNLSHHRHLLFSSTCFSFLILSIP-ILSIFALLIFLCTSSRKSNKSQQ-HKN 60
MAR FPTISNLSH HLLF ST FSFLILS ILSIFALLIFLCTSSRKSNKSQQ N
Sbjct: 1 MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
Query: 61 FVSKMNSNISSRAISMAKMISWRKVEAAIEEEEEEEEEEKRGPGGCDLSDEDEEEEVWRK 120
FVSKMNSNISSRAISMAKMISWRKVEAA EEEEEEEE+RG GGCD D+DEEEEVWRK
Sbjct: 61 FVSKMNSNISSRAISMAKMISWRKVEAA---EEEEEEEEERGSGGCDFIDKDEEEEVWRK 120
Query: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 153
TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151
BLAST of PI0018762 vs. ExPASy TrEMBL
Match:
A0A5D3DFS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold712G00010 PE=4 SV=1)
HSP 1 Score: 209.1 bits (531), Expect = 1.3e-50
Identity = 124/154 (80.52%), Postives = 130/154 (84.42%), Query Frame = 0
Query: 1 MARLFPTISNLSHHRHLLFSSTCFSFLILSI-PILSIFALLIFLCTSSRKSNKSQQHK-N 60
MAR FPTISNLSHH HLLF ST FSF ILS ILSIFALLIFLCTSS KSNKSQQ K
Sbjct: 1 MARPFPTISNLSHHPHLLFFSTHFSFPILSTSTILSIFALLIFLCTSSTKSNKSQQGKTT 60
Query: 61 FVSKMNSNISSRAISMAKMISWRKVEAAIEEEEEEEEEEKRGPGGCDLSDEDEEEEVWRK 120
FVSKMNSNISSRAISMAK+ISWRKVEAA +E EE+RG G CD + ++EEEVWRK
Sbjct: 61 FVSKMNSNISSRAISMAKIISWRKVEAA------DELEEERGSGSCD--ELEDEEEVWRK 120
Query: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 153
TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 146
BLAST of PI0018762 vs. ExPASy TrEMBL
Match:
A0A5A7V4T5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00580 PE=4 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 8.7e-28
Identity = 72/90 (80.00%), Postives = 78/90 (86.67%), Query Frame = 0
Query: 63 MNSNISSRAISMAKMISWRKVEAAIEEEEEEEEEEKRGPGGCDLSDEDEEEEVWRKTIIR 122
MNSNISSRAISMAK+ISWRKVEAA +E EE+RG G CD + ++EEEVWRKTIIR
Sbjct: 1 MNSNISSRAISMAKIISWRKVEAA------DELEEERGSGSCD--ELEDEEEVWRKTIIR 60
Query: 123 GERCRPLEFSGKIDYDSDGNLLCDSNRDFK 153
GERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 61 GERCRPLEFSGKIDYDSDGNLLCDSNRDFK 82
BLAST of PI0018762 vs. ExPASy TrEMBL
Match:
A0A6J5WQZ0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21513 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 7.9e-21
Identity = 77/176 (43.75%), Postives = 106/176 (60.23%), Query Frame = 0
Query: 1 MAR-LFPTISNLSHHRHLLFSSTCFSFLILSIPILSIFALLIFLCTS--SRKSNKSQQH- 60
MAR L P+ S SHH LF FL I I S+F+LLIFLC S S+KSN+ ++
Sbjct: 1 MARPLAPSFSMASHH---LFQHPS-HFLFAPIVIFSMFSLLIFLCASHKSKKSNEKKEEA 60
Query: 61 --------KNFVSKMNSNISSRAISMAKMISWRKVEAAIEEEEEEEEEEKRGPG------ 120
F++K+NS ISS+A++MAKM+SWRK+EA E+++++++++
Sbjct: 61 ITNSESKDAKFIAKLNSKISSKALAMAKMVSWRKMEAGEEDQKDDDDDDHSDEAVWRKSI 120
Query: 121 -----------GCDLSDEDEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 148
D D+D +E VWRK+II GERC PL FSGKIDYDS+GNLL +S
Sbjct: 121 IMGERCTPLNDDDDDDDDDRDEAVWRKSIIMGERCAPLNFSGKIDYDSEGNLLPES 172
BLAST of PI0018762 vs. ExPASy TrEMBL
Match:
A0A5N5G8W9 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019848 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 0
Query: 21 STCFSFLILSIPI--LSIFALLIFLCTSSRKSNKSQQ--------HKNFVSKMNSNISSR 80
++C + LI IPI SIF++LI LC S++KS ++++ FV+K+N ISS+
Sbjct: 2 ASCSTHLIFVIPISFFSIFSILICLCASTKKSKETEEVIIDTKSKDVKFVAKLNRKISSK 61
Query: 81 AISMAKMISWRKVEAAIEEEEEEEEEEKRGPGGCDLSDEDEEEEVWRKTIIRGERCRPLE 140
A++MAKMISWRKVEAA EE+ E D++E VW+K I+ GERC PL+
Sbjct: 62 AVAMAKMISWRKVEAAAEEDYE----------------TDDDEAVWKKKIMMGERCSPLK 121
Query: 141 FSGKIDYDSDGNLLCDSNRD 151
FSGKI YDSDGNLL DS R+
Sbjct: 122 FSGKIVYDSDGNLLSDSQRE 125
BLAST of PI0018762 vs. NCBI nr
Match:
KGN57848.1 (hypothetical protein Csa_010872 [Cucumis sativus])
HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 135/154 (87.66%), Postives = 137/154 (88.96%), Query Frame = 0
Query: 1 MARLFPTISNLSHHRHLLFSSTCFSFLILSIP-ILSIFALLIFLCTSSRKSNKSQQ-HKN 60
MAR FPTISNLSH HLLF ST FSFLILS ILSIFALLIFLCTSSRKSNKSQQ N
Sbjct: 1 MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
Query: 61 FVSKMNSNISSRAISMAKMISWRKVEAAIEEEEEEEEEEKRGPGGCDLSDEDEEEEVWRK 120
FVSKMNSNISSRAISMAKMISWRKVEAA EEEEEEEE+RG GGCD D+DEEEEVWRK
Sbjct: 61 FVSKMNSNISSRAISMAKMISWRKVEAA---EEEEEEEEERGSGGCDFIDKDEEEEVWRK 120
Query: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 153
TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151
BLAST of PI0018762 vs. NCBI nr
Match:
TYK22452.1 (hypothetical protein E5676_scaffold712G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 209.1 bits (531), Expect = 2.6e-50
Identity = 124/154 (80.52%), Postives = 130/154 (84.42%), Query Frame = 0
Query: 1 MARLFPTISNLSHHRHLLFSSTCFSFLILSI-PILSIFALLIFLCTSSRKSNKSQQHK-N 60
MAR FPTISNLSHH HLLF ST FSF ILS ILSIFALLIFLCTSS KSNKSQQ K
Sbjct: 1 MARPFPTISNLSHHPHLLFFSTHFSFPILSTSTILSIFALLIFLCTSSTKSNKSQQGKTT 60
Query: 61 FVSKMNSNISSRAISMAKMISWRKVEAAIEEEEEEEEEEKRGPGGCDLSDEDEEEEVWRK 120
FVSKMNSNISSRAISMAK+ISWRKVEAA +E EE+RG G CD + ++EEEVWRK
Sbjct: 61 FVSKMNSNISSRAISMAKIISWRKVEAA------DELEEERGSGSCD--ELEDEEEVWRK 120
Query: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 153
TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 146
BLAST of PI0018762 vs. NCBI nr
Match:
XP_038906595.1 (uncharacterized protein LOC120092546 [Benincasa hispida])
HSP 1 Score: 179.9 bits (455), Expect = 1.7e-41
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 0
Query: 1 MARLFPTISNLSHHRH---LLFSSTCFSFLILSIPILSIFALLIFLCTSSRKSNKSQQHK 60
MARLFP+ISN SHH H L FSST FSFLI SI +LSIFAL++FLCTSSRKSNKSQQ +
Sbjct: 1 MARLFPSISNPSHHHHHHLLPFSSTNFSFLISSIAVLSIFALVVFLCTSSRKSNKSQQRR 60
Query: 61 NFVSKMNSNISSRAISMAKMISWRKVEAAIEEEEEEEEEEKRGPGGCDLSDEDE---EEE 120
NFVSKMNSNISSRAISMAKMISWRKVEAA +EE+EEE+R G C+LS +DE EEE
Sbjct: 61 NFVSKMNSNISSRAISMAKMISWRKVEAA----DEEDEEERR--GSCNLSGDDEEEDEEE 120
Query: 121 VWRKTIIRGERCRPLEFSGKI 136
VWRKTIIRGERCRPLEFS +
Sbjct: 121 VWRKTIIRGERCRPLEFSDSV 135
BLAST of PI0018762 vs. NCBI nr
Match:
KAG7036703.1 (hypothetical protein SDJN02_00323, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 176.8 bits (447), Expect = 1.4e-40
Identity = 105/154 (68.18%), Postives = 120/154 (77.92%), Query Frame = 0
Query: 1 MARLFPTISNLSHHRHLLFSSTCFSFLILSIPILSIFALLIFLCTSSRKSNKS--QQHKN 60
MA+ FP+ SN H HL FSS L+ SI +LSIFAL+IFLCTSSRKS K Q +N
Sbjct: 1 MAKPFPSFSN--HSYHLPFSSPS---LVASIAVLSIFALVIFLCTSSRKSKKPILLQQRN 60
Query: 61 FVSKMNSNISSRAISMAKMISWRKVEAAIEEEEEEEEEEKRGPGGCDLSDEDEEEEVWRK 120
FV+K+NSNISSRAIS+AKMISWRKVEAA +E+E G GG DLS +D ++EVWRK
Sbjct: 61 FVAKVNSNISSRAISIAKMISWRKVEAA------DEDEGGGGGGGFDLSGDDYDDEVWRK 120
Query: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 153
TIIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 143
BLAST of PI0018762 vs. NCBI nr
Match:
KAG6607004.1 (hypothetical protein SDJN03_00346, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 174.9 bits (442), Expect = 5.4e-40
Identity = 105/154 (68.18%), Postives = 120/154 (77.92%), Query Frame = 0
Query: 1 MARLFPTISNLSHHRHLLFSSTCFSFLILSIPILSIFALLIFLCTSSRKSNKS--QQHKN 60
MA+ FP+ SN H HL FSS L+ SI +LSIFAL+IFLCTSSRKS K Q +N
Sbjct: 1 MAKPFPSFSN--HSYHLPFSSPS---LVASIAVLSIFALVIFLCTSSRKSKKPILLQQRN 60
Query: 61 FVSKMNSNISSRAISMAKMISWRKVEAAIEEEEEEEEEEKRGPGGCDLSDEDEEEEVWRK 120
FV+K+NSNISSRAIS+AKMISWRKVEAA +E+E G GG DLS +D ++EVWRK
Sbjct: 61 FVAKVNSNISSRAISIAKMISWRKVEAA----DEDEGGGGGGGGGFDLSGDDYDDEVWRK 120
Query: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 153
TIIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 145
BLAST of PI0018762 vs. TAIR 10
Match:
AT1G49000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 44.7 bits (104), Expect = 7.9e-05
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 0
Query: 110 DEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLL 145
+EE +W++ I+ G +C PL+FSG I YDS+G LL
Sbjct: 102 EEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLL 136
BLAST of PI0018762 vs. TAIR 10
Match:
AT3G18560.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49000.1); Has 95 Blast hits to 95 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 41.2 bits (95), Expect = 8.7e-04
Identity = 16/39 (41.03%), Postives = 27/39 (69.23%), Query Frame = 0
Query: 106 LSDEDEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLL 145
+ +++EE VW++ I+ G +C PL++SG I YD G+ L
Sbjct: 124 MEEDEEEYGVWQREILMGGKCEPLDYSGVIYYDCSGHQL 162
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L7R8 | 1.6e-58 | 87.66 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1 | [more] |
A0A5D3DFS8 | 1.3e-50 | 80.52 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7V4T5 | 8.7e-28 | 80.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A6J5WQZ0 | 7.9e-21 | 43.75 | Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21513 PE=... | [more] |
A0A5N5G8W9 | 1.0e-20 | 48.57 | Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... | [more] |
Match Name | E-value | Identity | Description | |
KGN57848.1 | 3.4e-58 | 87.66 | hypothetical protein Csa_010872 [Cucumis sativus] | [more] |
TYK22452.1 | 2.6e-50 | 80.52 | hypothetical protein E5676_scaffold712G00010 [Cucumis melo var. makuwa] | [more] |
XP_038906595.1 | 1.7e-41 | 75.89 | uncharacterized protein LOC120092546 [Benincasa hispida] | [more] |
KAG7036703.1 | 1.4e-40 | 68.18 | hypothetical protein SDJN02_00323, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6607004.1 | 5.4e-40 | 68.18 | hypothetical protein SDJN03_00346, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
AT1G49000.1 | 7.9e-05 | 51.43 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
AT3G18560.1 | 8.7e-04 | 41.03 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |