PI0018385 (gene) Melon (PI 482460) v1

Overview


Name	PI0018385
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	repetitive proline-rich cell wall protein 3-like
Location	chr05: 18351523 .. 18351864 (+)
RNA-Seq Expression	PI0018385
Synteny	PI0018385

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTCCCAATAGGCAAAACTCAAACTCAAAAAGCCACAATGTTTCTCAAGTACTTTCTTCTCCTTCTTCTCGCAGTTGTGTTTCTTACCACAACTCAAGCCTTGAAACACCCCTCCAACTCCAACCAAGAAGTGATTCCGACCACCACCGACGTCACCGAAGGAAAGCTCCCGACCACCATCACCGATCTGAACGAAGAATCCAAATTCTACAAGAGGCCATTTCCCTACAAGAAGCCTTACACGAGGCCACCCTACAAGAAATATCCACCCTACAAGAAGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCCCACTAA

mRNA sequence

ATGAGGTTCCCAATAGGCAAAACTCAAACTCAAAAAGCCACAATGTTTCTCAAGTACTTTCTTCTCCTTCTTCTCGCAGTTGTGTTTCTTACCACAACTCAAGCCTTGAAACACCCCTCCAACTCCAACCAAGAAGTGATTCCGACCACCACCGACGTCACCGAAGGAAAGCTCCCGACCACCATCACCGATCTGAACGAAGAATCCAAATTCTACAAGAGGCCATTTCCCTACAAGAAGCCTTACACGAGGCCACCCTACAAGAAATATCCACCCTACAAGAAGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCCCACTAA

Coding sequence (CDS)

ATGAGGTTCCCAATAGGCAAAACTCAAACTCAAAAAGCCACAATGTTTCTCAAGTACTTTCTTCTCCTTCTTCTCGCAGTTGTGTTTCTTACCACAACTCAAGCCTTGAAACACCCCTCCAACTCCAACCAAGAAGTGATTCCGACCACCACCGACGTCACCGAAGGAAAGCTCCCGACCACCATCACCGATCTGAACGAAGAATCCAAATTCTACAAGAGGCCATTTCCCTACAAGAAGCCTTACACGAGGCCACCCTACAAGAAATATCCACCCTACAAGAAGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAGTACCCACCATCTTCCCACTAA

Protein sequence

MRFPIGKTQTQKATMFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPTTITDLNEESKFYKRPFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH

Homology

[Close]

BLAST of PI0018385 vs. ExPASy TrEMBL
Match: A0A0A0LI79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176190 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.3e-41
Identity = 97/113 (85.84%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 1   MRFPIGKTQTQKATMFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPT 60
           MRFP+GKTQT KATMFLKYFLLLLLAVV LTTTQALKHPSNSNQEVIP TTDVT GKLPT
Sbjct: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIP-TTDVTHGKLPT 60

Query: 61  TITDLNEESKFYKRPFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 114
           TITD NEESKFY+RP PYKKPY R      PPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  TITDPNEESKFYRRPSPYKKPYKR------PPYKRYPPYKKRPPYKKYPPSSH 106

[Close]

BLAST of PI0018385 vs. ExPASy TrEMBL
Match: A0A0A0LNP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176690 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.8e-38
Identity = 93/113 (82.30%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MRFPIGKTQTQKATMFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPT 60
           MRFPIGKTQT+KATMF KYFLLLLLAVV LTTTQALKHP NSNQE IP +TD+T GKLPT
Sbjct: 1   MRFPIGKTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIP-STDLTHGKLPT 60

Query: 61  TITDLNEESKFYKRPFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 114
           TITD NEESKF++RP PYKKPY R      PPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  TITDPNEESKFFRRPSPYKKPYKR------PPYKKYPPYKKRPPYKKYPPSSH 106

[Close]

BLAST of PI0018385 vs. ExPASy TrEMBL
Match: A0A5A7VEY7 (Repetitive proline-rich cell wall protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00050 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.3e-31
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 15  MFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPTTITDLNEESKFYKR 74
           MFLKYFLLLLLA V L+TTQALKHPS S+QEVIP TTDVT+G LPTTI D NEESKFY+R
Sbjct: 1   MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIP-TTDVTQGTLPTTIADPNEESKFYRR 60

Query: 75  PFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 114
           PFPYKKPY R      PPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  PFPYKKPYKR------PPYKKYPPYKKRPPYKKYPPSSH 92

[Close]

BLAST of PI0018385 vs. ExPASy TrEMBL
Match: A0A1S3CE34 (repetitive proline-rich cell wall protein 3-like OS=Cucumis melo OX=3656 GN=LOC103499417 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.3e-31
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 15  MFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPTTITDLNEESKFYKR 74
           MFLKYFLLLLLA V L+TTQALKHPS S+QEVIP TTDVT+G LPTTI D NEESKFY+R
Sbjct: 1   MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIP-TTDVTQGTLPTTIADPNEESKFYRR 60

Query: 75  PFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 114
           PFPYKKPY R      PPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  PFPYKKPYKR------PPYKKYPPYKKRPPYKKYPPSSH 92

[Close]

BLAST of PI0018385 vs. ExPASy TrEMBL
Match: Q8H0R6 (Proline-rich protein OS=Cucumis sativus OX=3659 GN=prp1 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.4e-30
Identity = 80/99 (80.81%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 15  MFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPTTITDLNEESKFYKR 74
           MF KYFLLLLLAVV LTTTQALKHP NSNQE IP +TD+T GKLPTTITD NEESKF++R
Sbjct: 1   MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIP-STDLTHGKLPTTITDPNEESKFFRR 60

Query: 75  PFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 114
           P PYKKPY R      PPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  PSPYKKPYKR------PPYKKYPPYKKRPPYKKYPPSSH 92

[Close]

BLAST of PI0018385 vs. NCBI nr
Match: XP_004147144.2 (repetitive proline-rich cell wall protein 3 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 4.8e-41
Identity = 97/113 (85.84%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 1   MRFPIGKTQTQKATMFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPT 60
           MRFP+GKTQT KATMFLKYFLLLLLAVV LTTTQALKHPSNSNQEVIP TTDVT GKLPT
Sbjct: 1   MRFPVGKTQTPKATMFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIP-TTDVTHGKLPT 60

Query: 61  TITDLNEESKFYKRPFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 114
           TITD NEESKFY+RP PYKKPY R      PPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 61  TITDPNEESKFYRRPSPYKKPYKR------PPYKRYPPYKKRPPYKKYPPSSH 106

[Close]

BLAST of PI0018385 vs. NCBI nr
Match: KAE8651815.1 (hypothetical protein Csa_006392, partial [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 2.5e-34
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 7   KTQTQKATMFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPTTITDLN 66
           KTQT+KATMF KYFLLLLLAVV LTTTQALKHP NSNQE IP +TD+T GKLPTTITD N
Sbjct: 1   KTQTRKATMFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIP-STDLTHGKLPTTITDPN 60

Query: 67  EESKFYKRPFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 114
           EESKF++RP PYKKPY R      PPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  EESKFFRRPSPYKKPYKR------PPYKKYPPYKKRPPYKKYPPSSH 100

[Close]

BLAST of PI0018385 vs. NCBI nr
Match: XP_008460638.1 (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo] >KAA0065667.1 repetitive proline-rich cell wall protein 3-like [Cucumis melo var. makuwa] >TYK15518.1 repetitive proline-rich cell wall protein 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-31
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 15  MFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPTTITDLNEESKFYKR 74
           MFLKYFLLLLLA V L+TTQALKHPS S+QEVIP TTDVT+G LPTTI D NEESKFY+R
Sbjct: 1   MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIP-TTDVTQGTLPTTIADPNEESKFYRR 60

Query: 75  PFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 114
           PFPYKKPY R      PPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  PFPYKKPYKR------PPYKKYPPYKKRPPYKKYPPSSH 92

[Close]

BLAST of PI0018385 vs. NCBI nr
Match: NP_001267631.1 (uncharacterized protein LOC101210961 precursor [Cucumis sativus] >CAD44256.1 proline-rich protein [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 4.9e-30
Identity = 80/99 (80.81%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 15  MFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPTTITDLNEESKFYKR 74
           MF KYFLLLLLAVV LTTTQALKHP NSNQE IP +TD+T GKLPTTITD NEESKF++R
Sbjct: 1   MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIP-STDLTHGKLPTTITDPNEESKFFRR 60

Query: 75  PFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSSH 114
           P PYKKPY R      PPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61  PSPYKKPYKR------PPYKKYPPYKKRPPYKKYPPSSH 92

[Close]

BLAST of PI0018385 vs. NCBI nr
Match: WP_219729224.1 (hypothetical protein, partial [Pectobacterium odoriferum])

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-25
Identity = 77/107 (71.96%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 9   QTQKATMFLKYFLLLLLAVVFLTTTQALKHPSNSNQEVIPTTTDVTEGKLPTTI---TDL 68
           QTQK  MFLKYFLLLLLAVV LTTTQALKHPS+SNQEVIP    +T+ +LPTT    TD 
Sbjct: 1   QTQKTKMFLKYFLLLLLAVVLLTTTQALKHPSDSNQEVIP----LTDERLPTTTTTNTDP 60

Query: 69  NEESKFYKRPFPYKKPYTRPPYKKYPPYKKYPPYKKRPPYKKYPPSS 113
           +EESKF      YKKPY + PY K PPYKKYPPYKK PPYKKYPPSS
Sbjct: 61  DEESKF------YKKPYYKRPYYKRPPYKKYPPYKKHPPYKKYPPSS 97

The following BLAST results are available for this feature:

BLAST of PI0018385 vs.


Match Name	E-value	Identity	Description

BLAST of PI0018385 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI79	2.3e-41	85.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176190 PE=4 SV=1	[more]
A0A0A0LNP2	1.8e-38	82.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176690 PE=4 SV=1	[more]
A0A5A7VEY7	1.3e-31	81.82	Repetitive proline-rich cell wall protein 3-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CE34	1.3e-31	81.82	repetitive proline-rich cell wall protein 3-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
Q8H0R6	2.4e-30	80.81	Proline-rich protein OS=Cucumis sativus OX=3659 GN=prp1 PE=2 SV=1	[more]

BLAST of PI0018385 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147144.2	4.8e-41	85.84	repetitive proline-rich cell wall protein 3 [Cucumis sativus]	[more]
KAE8651815.1	2.5e-34	81.31	hypothetical protein Csa_006392, partial [Cucumis sativus]	[more]
XP_008460638.1	2.6e-31	81.82	PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo] >KAA0...	[more]
NP_001267631.1	4.9e-30	80.81	uncharacterized protein LOC101210961 precursor [Cucumis sativus] >CAD44256.1 pro...	[more]
WP_219729224.1	2.1e-25	71.96	hypothetical protein, partial [Pectobacterium odoriferum]	[more]

BLAST of PI0018385 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0018385.1	PI0018385.1	mRNA