PI0017788 (gene) Melon (PI 482460) v1

Overview


Name	PI0017788
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein phosphatase 1 regulatory subunit pprA isoform F
Location	chr01: 3018365 .. 3018640 (-)
RNA-Seq Expression	PI0017788
Synteny	PI0017788

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTGTTTTCTGAATCTGTATTTATATGTTCTTTTGGTTGTTTATCAGGTTTGGATCTCTTCTACATGTATTGGTTTAGTTTCCCCTAGTGGTAAAAAAAAAAAAACTCCCTTCACTCTGGCAGCTGCAACTAGCTCCAAGTCTTCTCGCACCTTCAAATGGGTGTGGGATAATGGAGTGATATCTATTGGTGTTTTGAGGAAATCAAGATCATCACACATTTGGAGATTGTGTCGTGTTTTAGAGGGGCTGTCGCTCGATTACGGTTAA

mRNA sequence

ATGGCGGTTTGTTTTCTGAATCTTGGTAAAAAAAAAAAAACTCCCTTCACTCTGGCAGCTGCAACTAGCTCCAAGTCTTCTCGCACCTTCAAATGGGTGTGGGATAATGGAGTGATATCTATTGGTGTTTTGAGGAAATCAAGATCATCACACATTTGGAGATTGTGTCGTGTTTTAGAGGGGCTGTCGCTCGATTACGGTTAA

Coding sequence (CDS)

ATGGCGGTTTGTTTTCTGAATCTTGGTAAAAAAAAAAAAACTCCCTTCACTCTGGCAGCTGCAACTAGCTCCAAGTCTTCTCGCACCTTCAAATGGGTGTGGGATAATGGAGTGATATCTATTGGTGTTTTGAGGAAATCAAGATCATCACACATTTGGAGATTGTGTCGTGTTTTAGAGGGGCTGTCGCTCGATTACGGTTAA

Protein sequence

MAVCFLNLGKKKKTPFTLAAATSSKSSRTFKWVWDNGVISIGVLRKSRSSHIWRLCRVLEGLSLDYG

Homology

[Close]

BLAST of PI0017788 vs. ExPASy TrEMBL
Match: A0A0A0K3N3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045530 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 63/80 (78.75%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1  MAVCFLNLGKK-------------KKTPFTLAAATSSKSSRTFKWVWDNGVISIGVLRKS 60
          MAVCFLNL                KKTPFTLAAATSSKSSRTFKWVWDNGVIS+GVLRKS
Sbjct: 1  MAVCFLNLLGSLLHVCIGLVSLVVKKTPFTLAAATSSKSSRTFKWVWDNGVISLGVLRKS 60

Query: 61 RSSHIWRLCRVLEGLSLDYG 68
          RSSHIWRLCRVLEGLSLDYG
Sbjct: 61 RSSHIWRLCRVLEGLSLDYG 80

[Close]

BLAST of PI0017788 vs. ExPASy TrEMBL
Match: A0A6A5NCW2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00029075 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-08
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 6   LNLGKKKKTPFTLAAATSSKSSRTFKWVW-DN--GVISIGVLRKSRSSHIWRLCRVLEGL 65
           L+   +++  FTLAA T+S  SRT + VW DN  GVI + VL++SRSS IWRLCRV  GL
Sbjct: 67  LDSASQRRISFTLAALTNSNYSRTSRRVWGDNEAGVILLCVLQRSRSSDIWRLCRVSVGL 126

Query: 66  SLDYG 68
           SLDYG
Sbjct: 127 SLDYG 131

[Close]

BLAST of PI0017788 vs. ExPASy TrEMBL
Match: A0A445HNT0 (Protein phosphatase 1 regulatory subunit pprA isoform F (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_033920 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-08
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 12  KKTPFTLAAATSSKSSRTFKWVW--DNGVISIGVLRKSRSSHIWRLCRVLEGLSLDYG 68
           K   FTLAA T S  SRT + VW  + GVI + VLR+S+SS IWRLCRV  GLSLDYG
Sbjct: 43  KGISFTLAAITKSNYSRTSRRVWGDEEGVIWLCVLRRSKSSDIWRLCRVSVGLSLDYG 100

[Close]

BLAST of PI0017788 vs. ExPASy TrEMBL
Match: A0A4D6LH87 (Internalin A OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g2410 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-04
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 12 KKTPFTLAAATSSKSSRTFKWVW--DNGVISIGVLRKSRSSHIWRLCRVLEGLSLD 66
          K   FTLAA T    SRT + VW  + GVI + VLR+S+SS IWRLCRV + L LD
Sbjct: 26 KGISFTLAAITKPNYSRTSRRVWGDEEGVIWLCVLRRSKSSDIWRLCRVSKVLCLD 81

[Close]

BLAST of PI0017788 vs. NCBI nr
Match: KAE8645756.1 (hypothetical protein Csa_020289 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 12  KKTPFTLAAATSSKSSRTFKWVWDNGVISIGVLRKSRSSHIWRLCRVLEGLSLDYG 68
           KKTPFTLAAATSSKSSRTFKWVWDNGVIS+GVLRKSRSSHIWRLCRVLEGLSLDYG
Sbjct: 51  KKTPFTLAAATSSKSSRTFKWVWDNGVISLGVLRKSRSSHIWRLCRVLEGLSLDYG 106

[Close]

BLAST of PI0017788 vs. NCBI nr
Match: KAG7011939.1 (hypothetical protein SDJN02_26847, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.1 bits (266), Expect = 6.1e-20
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 12 KKTPFTLAAATSSKSSRTFKWVWDNGVISIGVLRKSRSSHIWRLCRVLEGLSLDYG 68
          KK  FTLAAATSS SSRTFKWVWDNGVIS+GVLRKSRSS+IWRLCRVLEGLSLDYG
Sbjct: 22 KKILFTLAAATSSNSSRTFKWVWDNGVISLGVLRKSRSSYIWRLCRVLEGLSLDYG 77

[Close]

BLAST of PI0017788 vs. NCBI nr
Match: KAG5224920.1 (Protein phosphatase regulatory [Salix suchowensis])

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-09
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 6   LNLGKKKKTPFTLAAATSSKSSRTFKWVW--DNGVISIGVLRKSRSSHIWRLCRVLEGLS 65
           L    +++  FTLAAAT+ K S   + VW  + GVI +  LR+SRSSH+WRLCRV EGLS
Sbjct: 58  LGFSSRQRFLFTLAAATNLKHSHASRRVWGDNEGVIFLCALRRSRSSHVWRLCRVSEGLS 117

Query: 66  LDYG 68
           LDYG
Sbjct: 118 LDYG 121

[Close]

BLAST of PI0017788 vs. NCBI nr
Match: KAF1885186.1 (hypothetical protein Lal_00029075 [Lupinus albus])

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-08
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 6   LNLGKKKKTPFTLAAATSSKSSRTFKWVW-DN--GVISIGVLRKSRSSHIWRLCRVLEGL 65
           L+   +++  FTLAA T+S  SRT + VW DN  GVI + VL++SRSS IWRLCRV  GL
Sbjct: 67  LDSASQRRISFTLAALTNSNYSRTSRRVWGDNEAGVILLCVLQRSRSSDIWRLCRVSVGL 126

Query: 66  SLDYG 68
           SLDYG
Sbjct: 127 SLDYG 131

[Close]

BLAST of PI0017788 vs. NCBI nr
Match: RZB75244.1 (Protein phosphatase 1 regulatory subunit pprA isoform F, partial [Glycine soja])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 12  KKTPFTLAAATSSKSSRTFKWVW--DNGVISIGVLRKSRSSHIWRLCRVLEGLSLDYG 68
           K   FTLAA T S  SRT + VW  + GVI + VLR+S+SS IWRLCRV  GLSLDYG
Sbjct: 43  KGISFTLAAITKSNYSRTSRRVWGDEEGVIWLCVLRRSKSSDIWRLCRVSVGLSLDYG 100

The following BLAST results are available for this feature:

BLAST of PI0017788 vs.


Match Name	E-value	Identity	Description

BLAST of PI0017788 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3N3	1.2e-24	78.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045530 PE=4 SV=1	[more]
A0A6A5NCW2	2.6e-08	58.46	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00029075 PE=4 SV=1	[more]
A0A445HNT0	5.8e-08	62.07	Protein phosphatase 1 regulatory subunit pprA isoform F (Fragment) OS=Glycine so...	[more]
A0A4D6LH87	1.7e-04	55.36	Internalin A OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g2410 PE=4 SV=1	[more]

BLAST of PI0017788 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645756.1	4.5e-23	98.21	hypothetical protein Csa_020289 [Cucumis sativus]	[more]
KAG7011939.1	6.1e-20	91.07	hypothetical protein SDJN02_26847, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG5224920.1	4.9e-09	56.25	Protein phosphatase regulatory [Salix suchowensis]	[more]
KAF1885186.1	5.4e-08	58.46	hypothetical protein Lal_00029075 [Lupinus albus]	[more]
RZB75244.1	1.2e-07	62.07	Protein phosphatase 1 regulatory subunit pprA isoform F, partial [Glycine soja]	[more]

BLAST of PI0017788 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017788.1	PI0017788.1	mRNA