Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGTGGAAGAGTATGATCAGGAGTTTGACATGTTGTCTCGTTTCGCTCCTGAGTTAGTGGATACTGAACGTGCCAGAGCAGAGAGGTTTGTTAGAGGTTTGAGGAGTGATATCCGAGGTTTTGTTCGAGCCTTCAAGCCAGCCACTCAGGTTGAAGCACTACGCCTGGTGATGGACATGAGTGTTCGGGAAGATGATGTCCCACTGAAGTCATCTAGCAAAGGGACATCATCTGGATTGAAGAGAAAGGCAGAGCAGTAG
mRNA sequence
ATGACTGTGGAAGAGTATGATCAGGAGTTTGACATGTTGTCTCGTTTCGCTCCTGAGTTAGTGGATACTGAACGTGCCAGAGCAGAGAGGTTTGTTAGAGGTTTGAGGAGTGATATCCGAGGTTTTGTTCGAGCCTTCAAGCCAGCCACTCAGGTTGAAGCACTACGCCTGGTGATGGACATGAGTGTTCGGGAAGATGATGTCCCACTGAAGTCATCTAGCAAAGGGACATCATCTGGATTGAAGAGAAAGGCAGAGCAGTAG
Coding sequence (CDS)
ATGACTGTGGAAGAGTATGATCAGGAGTTTGACATGTTGTCTCGTTTCGCTCCTGAGTTAGTGGATACTGAACGTGCCAGAGCAGAGAGGTTTGTTAGAGGTTTGAGGAGTGATATCCGAGGTTTTGTTCGAGCCTTCAAGCCAGCCACTCAGGTTGAAGCACTACGCCTGGTGATGGACATGAGTGTTCGGGAAGATGATGTCCCACTGAAGTCATCTAGCAAAGGGACATCATCTGGATTGAAGAGAAAGGCAGAGCAGTAG
Protein sequence
MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMDMSVREDDVPLKSSSKGTSSGLKRKAEQ
Homology
BLAST of PI0016746 vs. ExPASy TrEMBL
Match:
A0A5A7SIL8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003470 PE=4 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 4.1e-22
Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = 0
Query: 1 MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
MTVE+YD EFDMLSRFAPE++ TE ARA++FVRGLR DI+G VRAF+PATQ +ALRL +D
Sbjct: 363 MTVEQYDAEFDMLSRFAPEIIATEAARADKFVRGLRLDIQGLVRAFRPATQADALRLTLD 422
Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
+S++E K + KG++SG KRKAEQ
Sbjct: 423 LSLQERANSSKGAGKGSTSGQKRKAEQ 449
BLAST of PI0016746 vs. ExPASy TrEMBL
Match:
A0A5A7VQE0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00260 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 56/87 (64.37%), Postives = 74/87 (85.06%), Query Frame = 0
Query: 1 MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
MTVE+YD EFDMLSRFAPE++ TE ARA++FVRGLR DI+GFVRAF+PAT V+ALRL +D
Sbjct: 1 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGFVRAFRPATHVDALRLAVD 60
Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
+S++E K +++G++SG KRKAE+
Sbjct: 61 LSLQERANSSKVANRGSTSGQKRKAEK 87
BLAST of PI0016746 vs. ExPASy TrEMBL
Match:
A0A5A7VJE2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005560 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 56/87 (64.37%), Postives = 73/87 (83.91%), Query Frame = 0
Query: 1 MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
MTVE+YD EFDMLSRFAPE++ TE ARA++FVRGLR DI+G VRAF+PAT V+ALRL +D
Sbjct: 212 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHVDALRLAVD 271
Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
+S++E K++ +G++SG KRKAEQ
Sbjct: 272 LSLQERANSSKTAGRGSTSGQKRKAEQ 298
BLAST of PI0016746 vs. ExPASy TrEMBL
Match:
A0A5A7VAF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001540 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 0
Query: 1 MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
MTVE+YD EFDMLSRFAPE++ TE ARA+RFVRGLR DI+G VRAF+PAT +ALRL +D
Sbjct: 43 MTVEQYDAEFDMLSRFAPEMIATEAARADRFVRGLRLDIQGLVRAFRPATHADALRLAVD 102
Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
+S++E K++ +G++SG KRKAEQ
Sbjct: 103 LSLQERANSSKTAGRGSTSGQKRKAEQ 129
BLAST of PI0016746 vs. ExPASy TrEMBL
Match:
A0A5A7T2B0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001620 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 0
Query: 1 MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
MTVE+YD EFDMLSRFAPE++ TE ARA++FVRGLR DI+G VRAF+PAT +ALRL +D
Sbjct: 177 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 236
Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
+S++E K++ KG++SG KRKAEQ
Sbjct: 237 LSLQERANSSKTAGKGSTSGQKRKAEQ 263
BLAST of PI0016746 vs. NCBI nr
Match:
XP_031736733.1 (uncharacterized protein LOC116402075 [Cucumis sativus])
HSP 1 Score: 130.6 bits (327), Expect = 6.7e-27
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 0
Query: 1 MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
MTVEEYDQEFDMLSRFAPELV E+ARAERFV+GLR +IRGFVRA KP TQ EALRL +D
Sbjct: 45 MTVEEYDQEFDMLSRFAPELVGNEQARAERFVKGLRDEIRGFVRALKPTTQAEALRLAVD 104
Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
MS+ +D++ +SS KGTSSG KRKAEQ
Sbjct: 105 MSIGKDEIQARSSDKGTSSGQKRKAEQ 131
BLAST of PI0016746 vs. NCBI nr
Match:
XP_031745367.1 (uncharacterized protein LOC116405550 [Cucumis sativus])
HSP 1 Score: 125.6 bits (314), Expect = 2.2e-25
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0
Query: 1 MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
MTVEEYDQEFDMLSRFAPELV E+A+A+RFV+GLR +IRGFVRA KP TQ EALRL MD
Sbjct: 45 MTVEEYDQEFDMLSRFAPELVGNEQAKADRFVKGLRDEIRGFVRALKPTTQAEALRLAMD 104
Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
MS+ +D++ +S KG+SSG KRKAEQ
Sbjct: 105 MSIGKDEIRARSFDKGSSSGQKRKAEQ 131
BLAST of PI0016746 vs. NCBI nr
Match:
XP_031739508.1 (uncharacterized protein LOC116403159 [Cucumis sativus] >XP_031739675.1 uncharacterized protein LOC116403209 [Cucumis sativus] >XP_031741725.1 uncharacterized protein LOC116403919 [Cucumis sativus] >XP_031745322.1 uncharacterized protein LOC116405472 [Cucumis sativus])
HSP 1 Score: 125.2 bits (313), Expect = 2.8e-25
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0
Query: 1 MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
MTVEEYDQEFDMLSRFAPELV E+ARA+RFV+GLR +IRGFVRA KP TQ EALRL +D
Sbjct: 170 MTVEEYDQEFDMLSRFAPELVGNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVD 229
Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
MS+ +D++ +S KG+SSG KRKAEQ
Sbjct: 230 MSIGKDEIRARSFDKGSSSGQKRKAEQ 256
BLAST of PI0016746 vs. NCBI nr
Match:
XP_031745057.1 (uncharacterized protein LOC116405236 [Cucumis sativus])
HSP 1 Score: 125.2 bits (313), Expect = 2.8e-25
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0
Query: 1 MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
MTVEEYDQEFDMLSRFAPELV E+ARA+RFV+GLR +IRGFVRA KP TQ EALRL +D
Sbjct: 152 MTVEEYDQEFDMLSRFAPELVGNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVD 211
Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
MS+ +D++ +S KG+SSG KRKAEQ
Sbjct: 212 MSIGKDEIRARSFDKGSSSGQKRKAEQ 238
BLAST of PI0016746 vs. NCBI nr
Match:
XP_031744134.1 (uncharacterized protein LOC116404793 isoform X2 [Cucumis sativus])
HSP 1 Score: 123.6 bits (309), Expect = 8.2e-25
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 0
Query: 1 MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
MTVEEYDQEFDMLSRFAPELV E+ARA+RFV+GLR +IRGFVRA KP TQ EALRL +D
Sbjct: 1 MTVEEYDQEFDMLSRFAPELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVD 60
Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
MS+ +D++ +S KG+SSG KRK EQ
Sbjct: 61 MSIGKDEIQPRSFDKGSSSGQKRKVEQ 87
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SIL8 | 4.1e-22 | 65.52 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34... | [more] |
A0A5A7VQE0 | 1.2e-21 | 64.37 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24... | [more] |
A0A5A7VJE2 | 1.2e-21 | 64.37 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21... | [more] |
A0A5A7VAF9 | 1.6e-21 | 64.37 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
A0A5A7T2B0 | 1.6e-21 | 64.37 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
Match Name | E-value | Identity | Description | |
XP_031736733.1 | 6.7e-27 | 75.86 | uncharacterized protein LOC116402075 [Cucumis sativus] | [more] |
XP_031745367.1 | 2.2e-25 | 72.41 | uncharacterized protein LOC116405550 [Cucumis sativus] | [more] |
XP_031739508.1 | 2.8e-25 | 72.41 | uncharacterized protein LOC116403159 [Cucumis sativus] >XP_031739675.1 uncharact... | [more] |
XP_031745057.1 | 2.8e-25 | 72.41 | uncharacterized protein LOC116405236 [Cucumis sativus] | [more] |
XP_031744134.1 | 8.2e-25 | 71.26 | uncharacterized protein LOC116404793 isoform X2 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |