PI0016746 (gene) Melon (PI 482460) v1

Overview


Name	PI0016746
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag protease polyprotein
Location	chr04: 15221240 .. 15221503 (+)
RNA-Seq Expression	PI0016746
Synteny	PI0016746

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTGGAAGAGTATGATCAGGAGTTTGACATGTTGTCTCGTTTCGCTCCTGAGTTAGTGGATACTGAACGTGCCAGAGCAGAGAGGTTTGTTAGAGGTTTGAGGAGTGATATCCGAGGTTTTGTTCGAGCCTTCAAGCCAGCCACTCAGGTTGAAGCACTACGCCTGGTGATGGACATGAGTGTTCGGGAAGATGATGTCCCACTGAAGTCATCTAGCAAAGGGACATCATCTGGATTGAAGAGAAAGGCAGAGCAGTAG

mRNA sequence

ATGACTGTGGAAGAGTATGATCAGGAGTTTGACATGTTGTCTCGTTTCGCTCCTGAGTTAGTGGATACTGAACGTGCCAGAGCAGAGAGGTTTGTTAGAGGTTTGAGGAGTGATATCCGAGGTTTTGTTCGAGCCTTCAAGCCAGCCACTCAGGTTGAAGCACTACGCCTGGTGATGGACATGAGTGTTCGGGAAGATGATGTCCCACTGAAGTCATCTAGCAAAGGGACATCATCTGGATTGAAGAGAAAGGCAGAGCAGTAG

Coding sequence (CDS)

ATGACTGTGGAAGAGTATGATCAGGAGTTTGACATGTTGTCTCGTTTCGCTCCTGAGTTAGTGGATACTGAACGTGCCAGAGCAGAGAGGTTTGTTAGAGGTTTGAGGAGTGATATCCGAGGTTTTGTTCGAGCCTTCAAGCCAGCCACTCAGGTTGAAGCACTACGCCTGGTGATGGACATGAGTGTTCGGGAAGATGATGTCCCACTGAAGTCATCTAGCAAAGGGACATCATCTGGATTGAAGAGAAAGGCAGAGCAGTAG

Protein sequence

MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMDMSVREDDVPLKSSSKGTSSGLKRKAEQ

Homology

[Close]

BLAST of PI0016746 vs. ExPASy TrEMBL
Match: A0A5A7SIL8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003470 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.1e-22
Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1   MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
           MTVE+YD EFDMLSRFAPE++ TE ARA++FVRGLR DI+G VRAF+PATQ +ALRL +D
Sbjct: 363 MTVEQYDAEFDMLSRFAPEIIATEAARADKFVRGLRLDIQGLVRAFRPATQADALRLTLD 422

Query: 61  MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
           +S++E     K + KG++SG KRKAEQ
Sbjct: 423 LSLQERANSSKGAGKGSTSGQKRKAEQ 449

[Close]

BLAST of PI0016746 vs. ExPASy TrEMBL
Match: A0A5A7VQE0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00260 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 56/87 (64.37%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
          MTVE+YD EFDMLSRFAPE++ TE ARA++FVRGLR DI+GFVRAF+PAT V+ALRL +D
Sbjct: 1  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGFVRAFRPATHVDALRLAVD 60

Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
          +S++E     K +++G++SG KRKAE+
Sbjct: 61 LSLQERANSSKVANRGSTSGQKRKAEK 87

[Close]

BLAST of PI0016746 vs. ExPASy TrEMBL
Match: A0A5A7VJE2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005560 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 56/87 (64.37%), Postives = 73/87 (83.91%), Query Frame = 0


Query: 1   MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
           MTVE+YD EFDMLSRFAPE++ TE ARA++FVRGLR DI+G VRAF+PAT V+ALRL +D
Sbjct: 212 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHVDALRLAVD 271

Query: 61  MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
           +S++E     K++ +G++SG KRKAEQ
Sbjct: 272 LSLQERANSSKTAGRGSTSGQKRKAEQ 298

[Close]

BLAST of PI0016746 vs. ExPASy TrEMBL
Match: A0A5A7VAF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001540 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1   MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
           MTVE+YD EFDMLSRFAPE++ TE ARA+RFVRGLR DI+G VRAF+PAT  +ALRL +D
Sbjct: 43  MTVEQYDAEFDMLSRFAPEMIATEAARADRFVRGLRLDIQGLVRAFRPATHADALRLAVD 102

Query: 61  MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
           +S++E     K++ +G++SG KRKAEQ
Sbjct: 103 LSLQERANSSKTAGRGSTSGQKRKAEQ 129

[Close]

BLAST of PI0016746 vs. ExPASy TrEMBL
Match: A0A5A7T2B0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001620 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1   MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
           MTVE+YD EFDMLSRFAPE++ TE ARA++FVRGLR DI+G VRAF+PAT  +ALRL +D
Sbjct: 177 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 236

Query: 61  MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
           +S++E     K++ KG++SG KRKAEQ
Sbjct: 237 LSLQERANSSKTAGKGSTSGQKRKAEQ 263

[Close]

BLAST of PI0016746 vs. NCBI nr
Match: XP_031736733.1 (uncharacterized protein LOC116402075 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 6.7e-27
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1   MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
           MTVEEYDQEFDMLSRFAPELV  E+ARAERFV+GLR +IRGFVRA KP TQ EALRL +D
Sbjct: 45  MTVEEYDQEFDMLSRFAPELVGNEQARAERFVKGLRDEIRGFVRALKPTTQAEALRLAVD 104

Query: 61  MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
           MS+ +D++  +SS KGTSSG KRKAEQ
Sbjct: 105 MSIGKDEIQARSSDKGTSSGQKRKAEQ 131

[Close]

BLAST of PI0016746 vs. NCBI nr
Match: XP_031745367.1 (uncharacterized protein LOC116405550 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-25
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1   MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
           MTVEEYDQEFDMLSRFAPELV  E+A+A+RFV+GLR +IRGFVRA KP TQ EALRL MD
Sbjct: 45  MTVEEYDQEFDMLSRFAPELVGNEQAKADRFVKGLRDEIRGFVRALKPTTQAEALRLAMD 104

Query: 61  MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
           MS+ +D++  +S  KG+SSG KRKAEQ
Sbjct: 105 MSIGKDEIRARSFDKGSSSGQKRKAEQ 131

[Close]

BLAST of PI0016746 vs. NCBI nr
Match: XP_031739508.1 (uncharacterized protein LOC116403159 [Cucumis sativus] >XP_031739675.1 uncharacterized protein LOC116403209 [Cucumis sativus] >XP_031741725.1 uncharacterized protein LOC116403919 [Cucumis sativus] >XP_031745322.1 uncharacterized protein LOC116405472 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-25
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1   MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
           MTVEEYDQEFDMLSRFAPELV  E+ARA+RFV+GLR +IRGFVRA KP TQ EALRL +D
Sbjct: 170 MTVEEYDQEFDMLSRFAPELVGNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVD 229

Query: 61  MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
           MS+ +D++  +S  KG+SSG KRKAEQ
Sbjct: 230 MSIGKDEIRARSFDKGSSSGQKRKAEQ 256

[Close]

BLAST of PI0016746 vs. NCBI nr
Match: XP_031745057.1 (uncharacterized protein LOC116405236 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-25
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1   MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
           MTVEEYDQEFDMLSRFAPELV  E+ARA+RFV+GLR +IRGFVRA KP TQ EALRL +D
Sbjct: 152 MTVEEYDQEFDMLSRFAPELVGNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVD 211

Query: 61  MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
           MS+ +D++  +S  KG+SSG KRKAEQ
Sbjct: 212 MSIGKDEIRARSFDKGSSSGQKRKAEQ 238

[Close]

BLAST of PI0016746 vs. NCBI nr
Match: XP_031744134.1 (uncharacterized protein LOC116404793 isoform X2 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 8.2e-25
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 0


Query: 1  MTVEEYDQEFDMLSRFAPELVDTERARAERFVRGLRSDIRGFVRAFKPATQVEALRLVMD 60
          MTVEEYDQEFDMLSRFAPELV  E+ARA+RFV+GLR +IRGFVRA KP TQ EALRL +D
Sbjct: 1  MTVEEYDQEFDMLSRFAPELVSNEQARADRFVKGLRDEIRGFVRALKPTTQAEALRLAVD 60

Query: 61 MSVREDDVPLKSSSKGTSSGLKRKAEQ 88
          MS+ +D++  +S  KG+SSG KRK EQ
Sbjct: 61 MSIGKDEIQPRSFDKGSSSGQKRKVEQ 87

The following BLAST results are available for this feature:

BLAST of PI0016746 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016746 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SIL8	4.1e-22	65.52	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7VQE0	1.2e-21	64.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7VJE2	1.2e-21	64.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7VAF9	1.6e-21	64.37	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7T2B0	1.6e-21	64.37	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of PI0016746 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736733.1	6.7e-27	75.86	uncharacterized protein LOC116402075 [Cucumis sativus]	[more]
XP_031745367.1	2.2e-25	72.41	uncharacterized protein LOC116405550 [Cucumis sativus]	[more]
XP_031739508.1	2.8e-25	72.41	uncharacterized protein LOC116403159 [Cucumis sativus] >XP_031739675.1 uncharact...	[more]
XP_031745057.1	2.8e-25	72.41	uncharacterized protein LOC116405236 [Cucumis sativus]	[more]
XP_031744134.1	8.2e-25	71.26	uncharacterized protein LOC116404793 isoform X2 [Cucumis sativus]	[more]

BLAST of PI0016746 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0016746.1	PI0016746.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0006885	regulation of pH
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015299	solute:proton antiporter activity