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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCTCCAGTCACATCTAGCAAAGGCCAAGGCCGATAATGATTCTACCTCTACTCCTCATGTAGTAGGTTTGTGCTCCCCTTACTCTAATACTAGAGCCACTAAACATTGGATCTTGGATTCTGGAGCATCATCAAACATTTGTTATTGCAAAGAACTATTCACATCATTACACTCCATATCAAATGTCACAATCTCTTTGCCTGACAATAGACAATTCAGTGTGAGTTTTGTCGGTGATAAATCTTGGTTAACACTTCAGAATGTGCTCTTTATACCTGATTTTCGGTTCAACCTTCTTTCAATCAGCGCCTTAACTGCAAATGTGCCAATTACAGTCCAATTTTATGTTGACAATTGTGTAATAGTGGACAAGTTTTCGTTGAAGATGATTGGCAAAGCTAGATTTTGGTATGACTTATATGTGCTCAAGTTGAGAAGCCCCTTGCTCTAGATTTGTCTACTCCCTCCATCTTGAATATTGCTGTTAATTTTCATGTTCAAAATACTGTTACTAGCACTTGTTATATTGAAGCAGTAGTTACAAGCACTTCTTATCTTTGAAAGATGAATTGCATATTACTCTTTCTACTAAAAAACACGTTTGTCCTATTTGTCTTTTGGCTAAATAAAGGAAGTTGTCCTTTGGTCCAAACAATCATTTGGCAAATAAAGCTTTTGATTTAGTACACTGTGACATTTGGGGCCCTTGCAAATCTTCTACATATTCAGGTCATCGTTTCTTTATAACTATTGTAGATGATTTCACAAGATATACTTGGGTTTACAAAAGCCTTTTGATTAGACAATGCCCCAGAACTTTCTTTCACAGATTTCTTTGCAAATAAGGGTGTCATTCATCAATTCTCATGTGTTGGCCATTCAGAACAAAACTCAGTTGTCGAGAGAAAACATCAGCATGTACTCAATGTTGCTCGAGCTCTTTATTTTCATTCTAAAGTTTCCATTCAATTTTGGGGAGGGGGTATCTTGACAACCACTTTTTATCGTTTGAATGGTTCTCATGTTGAATGCTCATCTATGCACATCTTTGGATGTCTTTGCATTGCATCATCACTCACTGCACATAGATTTAAGTTTCTGCACATAGATTTAAGTTTCAACCCCGTGTCATTACCTCAGTCTTTATGGGATATCCTCCAGGAATGAAAGGGTACAAGCTATATGATGTTGAAAAGAAGATTCTTTTTATCTCCAAAGACGACGTGTTTCATGAACATGTCTTTCCTTGTCAACACATTTCTTCACAAGATAGTTTTGTTGATCCATTTCCAGAACTTATTACCCTTGCCATTTTCGTGTTTGCGAGCATTCCTCCTAATGAAGCTGGGACTAGTACATTAGCCAAAGAAGTCGTTGCCACTCCAACCAACAACAATGTTGACTGTGAATAAAATAACAGTGCTTCGGTTGAGAATCAAGCAACACTTGGCAGTCAAGCACCCATTGTGATTCCAAACAATGTGCCAACCACTTCTCAAAATGTTAGACGGTTTACTCGGCATACCAAACTACCTTCTTACCTTCGTGAGTATCATTGTAACCTTGCTTTAAGAGTCCTCTATGAGCAACGTGTCTGCTACTCTTACAAAGTTCCCCATTCAGAAGTTCAAGTCTTATAACAAGTTGTCCTCAAGTTATAAGAAATTCTTACTCAATGTTACTTCTACCTTTGAGCCACAGTTCTACCTGAAGCTCTCTTTCAAAGAATGACGCGATGTTATGACAGATGAGTTAAAAGCCATGGAAACAAACGAGACTTGGTCAGTTGTTCCTCTTCCTCTGTATCGTTCCAACTTTATCAGATGTCCTCGAAGGGATTCATTTGTTCCTCTTCCTCCTACTCAACATTCCATAGGCTACAAATGGGTGACAAAATCAAGCATGGAGCCGATATATCCATTGACCGCTCAAAAGCAAGGCTTGTAGTCAAGTGGTACACTCGACAAGAAGACCTTGATTATGTTGAAATGTTTTCTCTAGTTGCCAAGCTTGTGACCGTAAGAATTTTATTAACTTTGGTTGTATCAATGAAATGGGAATTAGTTCAACTTGATGTCAACAATGCATTCCTACATTGATCTTATTGAAGAAGTTTATATCGATCTATTGTTAGGAAACAAACATGGTGTGGATCTATTGTTAGGAAACAAACATGGTGTGGTTGCTAGAAAGGGGGAGTGTTTAGTATGTAAACTTATAGGCTTAAACAAGCTTCTCGACAGTGATTTGATAAGTTTTCTCATGCCCTTTTATCCCTCGGATTCTAACAGTCCAAGTCAGATTATTCTTTGTTTATCCGTGGCTCTGGACAAACTTTCTTAGCACTTTTAGTCTATGTTGATGATATAGTAATAATCGGTGCTTCATCTACTAATTCTGTATTCAGTTAAAAGACCTTGGCTGCTTAAAATATTTTTGGATTGGAGTTGGCTCATTCATCTGATGGCCTATTTGATTCTCAAAGACATTATATTATTCAATTACCGAAAGATAATGGTCTAAAAATGCAAGTTGGAGATAGGAAGCTTCTTGATGATCCCATCTGCTTACCGAACACTTGAAAGATTATTATATCTCACTATTAGTCGTCCTGACATTATGTTGCAATCCATAAGCTCGGCTAATACGTTGCTCATCTGAGGCACTCACACTTAGCAGCAACCCATACATTACTTTGATACCTTAAAGGAACTCCTTGGTCAAGGTCTCTTCTTAAAGGCATCTACTTCTTTTCAAATACGTGCCTTCAGTGATGCAGATTGGGCTTCTTTCCTTGACACTCGCAAGTCTACTACGAGTTTTTGTGTGTTTCTTGGTGATTCATTAGTCTCTTGGAAGTCAAAGAAGCAAATGACAGATTTAAAATCATTAGCTGAAGCAGAATATAGAGCTTTAGCAGCCACTGTTGGTGAAGTTTCTTGGCTTGCCAACTGCTTAAAGACCTGCACATTACTATTTCTTTAACTCCTTTGGTATTTTGTGATTGTACTGCTGCCATTCACATAGTCTCATATCCAGCTTTTCATGAAAGAAAGAAGCATATAGAGTTAGACTGCCACTTCGTGCAAGATCATGTAGCAAAAGGCATTGATGCCTATCCGGACTCACTCCCAATTGGCTGACCCGGACTCACTCCCAATTGGCTGACATTTTCACCAAGGGCTTGCCATTTTCATTTACACTACTATTGTCCAAGATGGTTGTCTTAGACATACTAAGTCCATCTTGAAGGGGAGTTTTAGGATATAATGGAAATTAGTTATACTGTTAAAACTCCTGTTATTTTGTTATTGGTGGTCATTCTGATATCACCCACTTATGCTTACTATATTGCCCATTCTTAATAATAAAGATTGAGAAGTTATTTTGTCTTTGTGTTAGTTTAATAAAGACTGATGTTATCTGTTTCATACATCTGACCTGTGATTGATTGGAATGGCTTCTCGAAAATAGAATATCATATTTTAAGCAAAGAAGTTATTTGAAGGTATGGAAAGAAAAAAAAGGTGATTCACTGGGAAAGCACATTCCAGAATTTGACAACGTCAGAAGAAACACGATGGTGTGGAGAAAGCTGGTGGCAGAAAGAGAAATAGTGGTGGATGA mRNA sequence ATGCTCCAGTCACATCTAGCAAAGGCCAAGGCCGATAATGATTCTACCTCTACTCCTCATGTAGTAGTTGAGAAGCCCCTTGCTCTAGATTTGTCTACTCCCTCCATCTTGAATATTGCTGTTAATTTTCATGTTCAAAATACTGTTACTAGCACTTGTTATATTGAAGCAGTAGTTACAAAACTTATTACCCTTGCCATTTTCGTGTTTGCGAGCATTCCTCCTAATGAAGCTGGGACTAGTACATTAGCCAAAGAAGTCGTTGCCACTCCAACCAACAACAATAATCAAGCAACACTTGGCAGTCAAGCACCCATTGTGATTCCAAACAATGTGCCAACCACTTCTCAAAATGTTAGACGGTTTACTCGGCATACCAAACTACCTTCTTACCTTCGTGACAACGTGTCTGCTACTCTTACAAAGTTCCCCATTCAGAAGTTCAAGTCTTATAACAAGTTGTCCTCAAGTTATAAGAAATTCTTACTCAATAAGAAACACGATGGTGTGGAGAAAGCTGGTGGCAGAAAGAGAAATAGTGGTGGATGA Coding sequence (CDS) ATGCTCCAGTCACATCTAGCAAAGGCCAAGGCCGATAATGATTCTACCTCTACTCCTCATGTAGTAGTTGAGAAGCCCCTTGCTCTAGATTTGTCTACTCCCTCCATCTTGAATATTGCTGTTAATTTTCATGTTCAAAATACTGTTACTAGCACTTGTTATATTGAAGCAGTAGTTACAAAACTTATTACCCTTGCCATTTTCGTGTTTGCGAGCATTCCTCCTAATGAAGCTGGGACTAGTACATTAGCCAAAGAAGTCGTTGCCACTCCAACCAACAACAATAATCAAGCAACACTTGGCAGTCAAGCACCCATTGTGATTCCAAACAATGTGCCAACCACTTCTCAAAATGTTAGACGGTTTACTCGGCATACCAAACTACCTTCTTACCTTCGTGACAACGTGTCTGCTACTCTTACAAAGTTCCCCATTCAGAAGTTCAAGTCTTATAACAAGTTGTCCTCAAGTTATAAGAAATTCTTACTCAATAAGAAACACGATGGTGTGGAGAAAGCTGGTGGCAGAAAGAGAAATAGTGGTGGATGA Protein sequence MLQSHLAKAKADNDSTSTPHVVVEKPLALDLSTPSILNIAVNFHVQNTVTSTCYIEAVVTKLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNNNQATLGSQAPIVIPNNVPTTSQNVRRFTRHTKLPSYLRDNVSATLTKFPIQKFKSYNKLSSSYKKFLLNKKHDGVEKAGGRKRNSGG
Homology
BLAST of PI0015629 vs. ExPASy TrEMBL
Match: A0A0A0LAR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G434950 PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 4.1e-48 Identity = 140/245 (57.14%), Postives = 149/245 (60.82%), Query Frame = 0 Query: 1 MLQSHLAKA----KADNDSTSTPHVVVEKPLALDLSTPSILNIAVNFHVQNTVTSTCYIE 60 MLQSHLAKA K +NDS STPHVV + LALDLSTPSILN AVNFH QNTVT+T Y+E Sbjct: 1 MLQSHLAKAKTKTKTNNDSASTPHVV--EALALDLSTPSILNTAVNFHAQNTVTTTRYLE 60
Query: 61 AVVTKLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQA 120 AVVTK++T AIF FA IP NEAGTSTLAKEVVATPTNNN NQATL SQA Sbjct: 61 AVVTKVVTPAIFEFAGIPFNEAGTSTLAKEVVATPTNNNVDCEQNNSAPVENQATLESQA 120
Query: 121 PIVIPNNVPTTSQNVRRFTRHTKLPSYL---------------RDNVSATLTKFPIQKFK 180 IVIPNNVPTTSQNVRR TR LP++L NV TK PIQKF Sbjct: 121 SIVIPNNVPTTSQNVRRSTR---LPNHLLIFMSIIVTLLQESSMSNVLTMPTKLPIQKFM 180
BLAST of PI0015629 vs. ExPASy TrEMBL
Match: A0A5D3C9G2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00180 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 8.3e-25 Identity = 80/128 (62.50%), Postives = 85/128 (66.41%), Query Frame = 0 Query: 61 KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVI 120 +L+T AIF FA IP NEA TSTLAKEVVATPTN N NQAT SQA VI Sbjct: 28 ELVTPAIFEFAGIPSNEARTSTLAKEVVATPTNYNVDYEQHNCAPVENQATFESQASSVI 87
Query: 121 PNNVPTTSQNVRRFTRHTKLPSYLRD------------NVSATLTKFPIQKFKSYNKLSS 165 PNNVPTTSQ++R TR TK PSYLR+ NVSA TKFPI K SYNKLSS Sbjct: 88 PNNVPTTSQSIRWSTRLTKPPSYLREYHCNLLQESSMSNVSAMPTKFPILKLMSYNKLSS 147
BLAST of PI0015629 vs. ExPASy TrEMBL
Match: A0A5A7UBB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G001310 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 8.3e-25 Identity = 80/128 (62.50%), Postives = 85/128 (66.41%), Query Frame = 0 Query: 61 KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVI 120 +L+T AIF FA IP NEA TSTLAKEVVATPTN N NQAT SQA VI Sbjct: 28 ELVTPAIFEFAGIPSNEARTSTLAKEVVATPTNYNVDYEQHNCAPVENQATFESQASSVI 87
Query: 121 PNNVPTTSQNVRRFTRHTKLPSYLRD------------NVSATLTKFPIQKFKSYNKLSS 165 PNNVPTTSQ++R TR TK PSYLR+ NVSA TKFPI K SYNKLSS Sbjct: 88 PNNVPTTSQSIRWSTRLTKPPSYLREYHCNLLQESSMSNVSAMPTKFPILKLMSYNKLSS 147
BLAST of PI0015629 vs. NCBI nr
Match: TYK08491.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 123.6 bits (309), Expect = 1.7e-24 Identity = 80/128 (62.50%), Postives = 85/128 (66.41%), Query Frame = 0 Query: 61 KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVI 120 +L+T AIF FA IP NEA TSTLAKEVVATPTN N NQAT SQA VI Sbjct: 28 ELVTPAIFEFAGIPSNEARTSTLAKEVVATPTNYNVDYEQHNCAPVENQATFESQASSVI 87
Query: 121 PNNVPTTSQNVRRFTRHTKLPSYLRD------------NVSATLTKFPIQKFKSYNKLSS 165 PNNVPTTSQ++R TR TK PSYLR+ NVSA TKFPI K SYNKLSS Sbjct: 88 PNNVPTTSQSIRWSTRLTKPPSYLREYHCNLLQESSMSNVSAMPTKFPILKLMSYNKLSS 147
BLAST of PI0015629 vs. NCBI nr
Match: KAA0050861.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 123.6 bits (309), Expect = 1.7e-24 Identity = 80/128 (62.50%), Postives = 85/128 (66.41%), Query Frame = 0 Query: 61 KLITLAIFVFASIPPNEAGTSTLAKEVVATPTNNN------------NQATLGSQAPIVI 120 +L+T AIF FA IP NEA TSTLAKEVVATPTN N NQAT SQA VI Sbjct: 28 ELVTPAIFEFAGIPSNEARTSTLAKEVVATPTNYNVDYEQHNCAPVENQATFESQASSVI 87
Query: 121 PNNVPTTSQNVRRFTRHTKLPSYLRD------------NVSATLTKFPIQKFKSYNKLSS 165 PNNVPTTSQ++R TR TK PSYLR+ NVSA TKFPI K SYNKLSS Sbjct: 88 PNNVPTTSQSIRWSTRLTKPPSYLREYHCNLLQESSMSNVSAMPTKFPILKLMSYNKLSS 147
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LAR9 | 4.1e-48 | 57.14 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G434950 PE=4 SV=1 | [more] |
A0A5D3C9G2 | 8.3e-25 | 62.50 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7UBB2 | 8.3e-25 | 62.50 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
Match Name | E-value | Identity | Description | |
TYK08491.1 | 1.7e-24 | 62.50 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0050861.1 | 1.7e-24 | 62.50 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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